Wall clock time and date at job start Tue Mar 31 2020 20:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.37723 * 2 1 4 4 N 1.46498 * 109.47014 * 302.18873 * 3 2 1 5 5 C 1.36942 * 120.00116 * 179.97438 * 4 3 2 6 6 H 1.08005 * 119.99242 * 359.97438 * 5 4 3 7 7 C 1.38805 * 120.00233 * 180.02562 * 5 4 3 8 8 N 1.31623 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00260 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46936 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47073 * 119.99594 * 9 7 5 12 12 H 1.48493 * 109.47238 * 240.00165 * 9 7 5 13 13 C 1.54617 * 110.32772 * 237.80647 * 2 1 3 14 14 C 1.54594 * 102.91627 * 262.81339 * 13 2 1 15 15 N 1.48122 * 103.42236 * 322.86653 * 14 13 2 16 16 C 1.34773 * 127.03329 * 219.28702 * 15 14 13 17 17 O 1.21279 * 119.99630 * 179.40523 * 16 15 14 18 18 C 1.50700 * 119.99996 * 359.68500 * 16 15 14 19 19 C 1.53006 * 109.46908 * 174.35934 * 18 16 15 20 20 C 1.53004 * 115.54498 * 277.17996 * 19 18 16 21 21 F 1.39897 * 109.47134 * 64.29088 * 20 19 18 22 22 F 1.39901 * 109.46928 * 184.29243 * 20 19 18 23 23 F 1.39900 * 109.47045 * 304.29135 * 20 19 18 24 24 C 1.52993 * 117.50062 * 131.47403 * 19 18 16 25 25 C 1.52992 * 117.50030 * 62.84723 * 19 18 16 26 26 C 1.47483 * 105.92995 * 39.02198 * 15 14 13 27 27 H 1.09000 * 109.46908 * 297.81645 * 1 2 3 28 28 H 1.09007 * 109.46809 * 57.81059 * 1 2 3 29 29 H 1.08992 * 109.47697 * 177.80728 * 1 2 3 30 30 H 1.09001 * 109.46986 * 62.18863 * 3 2 1 31 31 H 1.08999 * 109.47329 * 182.18802 * 3 2 1 32 32 H 0.97002 * 120.00144 * 359.97438 * 4 3 2 33 33 H 0.96997 * 120.00092 * 180.02562 * 8 7 5 34 34 H 1.09001 * 110.74016 * 21.30116 * 13 2 1 35 35 H 1.09001 * 110.73982 * 144.43814 * 13 2 1 36 36 H 1.09002 * 110.61712 * 204.35451 * 14 13 2 37 37 H 1.09000 * 110.54878 * 81.34578 * 14 13 2 38 38 H 1.09003 * 109.46891 * 294.35279 * 18 16 15 39 39 H 1.08994 * 109.47428 * 54.35563 * 18 16 15 40 40 H 1.09000 * 117.49922 * 359.97438 * 24 19 18 41 41 H 1.08996 * 117.50220 * 145.01852 * 24 19 18 42 42 H 1.09009 * 117.49761 * 214.97666 * 25 19 18 43 43 H 1.08997 * 117.50301 * 359.97438 * 25 19 18 44 44 H 1.09001 * 109.91195 * 94.13993 * 26 15 14 45 45 H 1.09001 * 109.91569 * 215.22508 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0627 1.4342 0.0000 4 7 1.5430 2.1482 -1.1689 5 6 1.8864 3.4568 -1.3804 6 1 2.5401 3.9627 -0.6852 7 6 1.3936 4.1335 -2.4877 8 7 0.5966 3.5171 -3.3346 9 14 1.8614 5.9189 -2.7758 10 1 2.7614 6.3767 -1.6869 11 1 2.5594 6.0432 -4.0806 12 1 0.6351 6.7561 -2.7886 13 6 2.0671 -0.7725 -1.2270 14 6 2.3639 -2.1754 -0.6493 15 7 2.8803 -1.8859 0.7085 16 6 3.8921 -2.5109 1.3425 17 8 4.2181 -2.1603 2.4568 18 6 4.6224 -3.6413 0.6642 19 6 5.8044 -4.0783 1.5321 20 6 7.0772 -3.2425 1.3827 21 9 6.8314 -1.9364 1.8194 22 9 8.0991 -3.8074 2.1533 23 9 7.4649 -3.2196 0.0387 24 6 5.9692 -5.5757 1.7992 25 6 5.4913 -4.6472 2.9174 26 6 2.0649 -0.7694 1.2222 27 1 -0.3633 0.4796 0.9089 28 1 -0.3633 0.5475 -0.8698 29 1 -0.3634 -1.0268 -0.0393 30 1 1.7398 1.9418 0.9090 31 1 3.1519 1.4173 -0.0392 32 1 0.9556 1.6939 -1.7931 33 1 0.2525 3.9898 -4.1086 34 1 1.3106 -0.8277 -2.0098 35 1 2.9788 -0.3101 -1.6053 36 1 3.1193 -2.6848 -1.2475 37 1 1.4506 -2.7679 -0.5951 38 1 3.9426 -4.4821 0.5262 39 1 4.9884 -3.3068 -0.3064 40 1 5.2354 -6.2495 1.3570 41 1 6.9846 -5.9658 1.8684 42 1 6.1925 -4.4265 3.7223 43 1 4.4435 -4.7098 3.2108 44 1 1.2329 -1.1571 1.8100 45 1 2.6800 -0.1129 1.8377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569671904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:44 Heat of formation + Delta-G solvation = -169.200513 kcal Electronic energy + Delta-G solvation = -30133.820818 eV Core-core repulsion = 25543.599170 eV Total energy + Delta-G solvation = -4590.221648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.11871 -48.67583 -48.58323 -41.35381 -39.72824 -38.12562 -36.45727 -34.38364 -32.26083 -30.82943 -30.49297 -27.97474 -27.62234 -26.76110 -24.59528 -23.93359 -23.52980 -21.87559 -20.38374 -20.04775 -19.39933 -19.32066 -19.17915 -18.36981 -17.90844 -17.11703 -16.50922 -16.40578 -15.91812 -15.76108 -15.53846 -15.41247 -15.17310 -15.06671 -15.00549 -14.89682 -14.78751 -14.75351 -14.60719 -14.23293 -14.09381 -13.53333 -13.27161 -13.19300 -13.05066 -12.91504 -12.76933 -12.60039 -12.59209 -12.43314 -12.14561 -12.07879 -11.74519 -11.62280 -11.51532 -11.39940 -11.36725 -10.96261 -10.76212 -9.68059 -8.99539 -7.96747 -5.24075 1.45812 1.46149 1.56141 1.62636 1.70198 1.89054 2.40701 2.54349 2.78257 2.92275 3.34471 3.36506 3.39497 3.44341 3.67913 3.70346 3.78626 3.82976 4.06029 4.24839 4.29518 4.34635 4.44364 4.45355 4.48385 4.62605 4.69814 4.72120 4.74762 4.81245 4.90169 4.93925 4.95676 5.02403 5.11810 5.12688 5.23268 5.27375 5.40844 5.48110 5.54852 6.26586 6.58346 7.16306 7.34069 8.08161 8.35867 9.26486 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017490 B = 0.002771 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.534982 B =10103.452684 C =10929.429372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 C 0.167 3.833 4 N -0.734 5.734 5 C -0.248 4.248 6 H 0.066 0.934 7 C -0.068 4.068 8 N -0.963 5.963 9 Si 0.969 3.031 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.290 1.290 13 C -0.120 4.120 14 C 0.106 3.894 15 N -0.621 5.621 16 C 0.519 3.481 17 O -0.567 6.567 18 C -0.091 4.091 19 C -0.208 4.208 20 C 0.479 3.521 21 F -0.192 7.192 22 F -0.184 7.184 23 F -0.185 7.185 24 C -0.113 4.113 25 C -0.129 4.129 26 C 0.124 3.876 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.012 0.988 31 H 0.002 0.998 32 H 0.380 0.620 33 H 0.252 0.748 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.153 0.847 39 H 0.112 0.888 40 H 0.146 0.854 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.800 -25.493 8.352 27.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.074 4.074 3 C 0.040 3.960 4 N -0.377 5.377 5 C -0.380 4.380 6 H 0.084 0.916 7 C -0.261 4.261 8 N -0.614 5.614 9 Si 0.798 3.202 10 H -0.198 1.198 11 H -0.218 1.218 12 H -0.217 1.217 13 C -0.159 4.159 14 C -0.016 4.016 15 N -0.355 5.355 16 C 0.309 3.691 17 O -0.446 6.446 18 C -0.130 4.130 19 C -0.210 4.210 20 C 0.425 3.575 21 F -0.173 7.173 22 F -0.166 7.166 23 F -0.166 7.166 24 C -0.150 4.150 25 C -0.166 4.166 26 C 0.001 3.999 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.030 0.970 31 H 0.020 0.980 32 H 0.214 0.786 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.171 0.829 39 H 0.130 0.870 40 H 0.164 0.836 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.132 0.868 44 H 0.103 0.897 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.183 -25.180 9.047 27.703 hybrid contribution 0.420 2.052 -0.517 2.158 sum 7.603 -23.127 8.529 25.796 Atomic orbital electron populations 1.21727 0.92222 1.02436 1.01750 1.21522 0.97039 0.93551 0.95265 1.20771 0.94653 0.91145 0.89416 1.42454 1.58141 1.10068 1.27076 1.19596 1.23041 0.89353 1.05963 0.91630 1.25447 1.00735 1.02163 0.97747 1.69786 1.38523 1.37525 1.15527 0.85146 0.77203 0.80450 0.77393 1.19761 1.21834 1.21748 1.22661 1.01313 0.95109 0.96778 1.22742 1.01140 0.96520 0.81161 1.48915 1.33377 1.34512 1.18689 1.20784 0.78635 0.83933 0.85776 1.90719 1.65899 1.66819 1.21190 1.21199 0.94965 0.98314 0.98487 1.22119 0.92949 0.99362 1.06537 1.19882 0.85674 0.78708 0.73245 1.93224 1.94332 1.40145 1.89594 1.93136 1.62891 1.84773 1.75756 1.93163 1.92390 1.96519 1.34553 1.23508 1.05473 0.86937 0.99052 1.23018 1.04004 0.99964 0.89628 1.21943 0.94462 0.88113 0.95422 0.92866 0.93645 0.89851 0.96997 0.98004 0.78564 0.93870 0.89320 0.93056 0.87698 0.87670 0.82911 0.87036 0.83636 0.86729 0.88611 0.86795 0.89711 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 8.05 71.98 0.58 -2.87 16 2 C -0.07 -2.20 0.67 -51.29 -0.03 -2.23 16 3 C 0.17 6.94 4.85 86.38 0.42 7.35 16 4 N -0.73 -37.02 5.12 -343.46 -1.76 -38.77 16 5 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 6 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 7 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 8 N -0.96 -57.91 13.06 21.65 0.28 -57.63 16 9 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 13 C -0.12 -3.21 5.72 31.69 0.18 -3.03 16 14 C 0.11 1.85 6.93 86.61 0.60 2.45 16 15 N -0.62 -14.51 3.29 -810.07 -2.67 -17.18 16 16 C 0.52 12.54 7.51 87.66 0.66 13.20 16 17 O -0.57 -18.20 14.32 -3.03 -0.04 -18.24 16 18 C -0.09 -1.35 4.69 29.85 0.14 -1.21 16 19 C -0.21 -3.45 1.35 -52.18 -0.07 -3.52 16 20 C 0.48 10.98 3.07 71.98 0.22 11.21 16 21 F -0.19 -5.88 15.83 44.97 0.71 -5.17 16 22 F -0.18 -4.04 15.90 44.97 0.71 -3.33 16 23 F -0.18 -4.22 16.81 44.97 0.76 -3.47 16 24 C -0.11 -0.99 9.60 30.59 0.29 -0.69 16 25 C -0.13 -1.91 8.48 30.59 0.26 -1.65 16 26 C 0.12 3.39 6.28 86.53 0.54 3.93 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.53 6.75 -2.38 -0.02 1.52 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.00 0.09 8.11 -2.39 -0.02 0.07 16 32 H 0.38 19.67 6.18 -92.71 -0.57 19.10 16 33 H 0.25 14.66 8.31 -92.71 -0.77 13.88 16 34 H 0.09 2.31 7.85 -2.39 -0.02 2.29 16 35 H 0.05 1.66 7.84 -2.39 -0.02 1.64 16 36 H 0.10 1.30 7.07 -2.39 -0.02 1.29 16 37 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.15 1.00 7.92 -2.39 -0.02 0.98 16 39 H 0.11 1.55 7.15 -2.39 -0.02 1.53 16 40 H 0.15 0.37 8.07 -2.39 -0.02 0.35 16 41 H 0.11 0.92 7.66 -2.39 -0.02 0.90 16 42 H 0.10 1.60 7.91 -2.38 -0.02 1.58 16 43 H 0.11 1.63 8.12 -2.39 -0.02 1.61 16 44 H 0.08 2.01 7.68 -2.39 -0.02 1.99 16 45 H 0.05 1.66 7.60 -2.39 -0.02 1.64 16 Total: -1.00 -73.76 372.49 5.56 -68.20 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.44 Total: 20.67 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 5.10 Total: 6.25 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -4.14 Total: -113.59 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.04 Total: -18.24 kcal Atomic # 9 Polarization: -14.15 SS G_CDS: 2.18 Total: -11.97 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -73.76 5.56 -68.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569671904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.003 kcal (2) G-P(sol) polarization free energy of solvation -73.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds