Wall clock time and date at job start Tue Mar 31 2020 20:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.38442 * 2 1 4 4 N 1.46496 * 109.47274 * 60.77433 * 3 2 1 5 5 C 1.36942 * 119.99636 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00184 * 0.02562 * 5 4 3 7 7 C 1.38810 * 119.99804 * 180.02562 * 5 4 3 8 8 N 1.31620 * 119.99938 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00264 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46852 * 90.00000 * 9 7 5 11 11 H 1.48499 * 109.47293 * 209.99927 * 9 7 5 12 12 H 1.48498 * 109.47063 * 330.00313 * 9 7 5 13 13 C 1.54284 * 110.34033 * 122.22634 * 2 1 3 14 14 C 1.54391 * 105.05266 * 118.82477 * 13 2 1 15 15 N 1.48318 * 104.53510 * 336.25761 * 14 13 2 16 16 C 1.34776 * 127.76857 * 219.52383 * 15 14 13 17 17 O 1.21281 * 119.99538 * 179.97438 * 16 15 14 18 18 C 1.50693 * 120.00133 * 359.92275 * 16 15 14 19 19 C 1.53004 * 109.47332 * 174.59643 * 18 16 15 20 20 C 1.52996 * 115.55038 * 277.32382 * 19 18 16 21 21 F 1.39897 * 109.47005 * 64.31146 * 20 19 18 22 22 F 1.39902 * 109.46778 * 184.30835 * 20 19 18 23 23 F 1.39896 * 109.47169 * 304.30666 * 20 19 18 24 24 C 1.53005 * 117.49878 * 131.61537 * 19 18 16 25 25 C 1.52996 * 117.49613 * 62.99255 * 19 18 16 26 26 C 1.48147 * 104.39289 * 39.45720 * 15 14 13 27 27 H 1.08999 * 109.47578 * 299.22340 * 1 2 3 28 28 H 1.08997 * 109.47262 * 59.23169 * 1 2 3 29 29 H 1.09004 * 109.46809 * 179.22391 * 1 2 3 30 30 H 1.09005 * 109.47321 * 180.77857 * 3 2 1 31 31 H 1.09005 * 109.46856 * 300.77387 * 3 2 1 32 32 H 0.96998 * 120.00173 * 0.02562 * 4 3 2 33 33 H 0.96999 * 119.99972 * 180.02562 * 8 7 5 34 34 H 1.09005 * 110.34529 * 237.74059 * 13 2 1 35 35 H 1.08995 * 110.34857 * 359.90115 * 13 2 1 36 36 H 1.09000 * 110.40900 * 94.96465 * 14 13 2 37 37 H 1.08997 * 110.40637 * 217.40391 * 14 13 2 38 38 H 1.08997 * 109.47527 * 294.60059 * 18 16 15 39 39 H 1.08999 * 109.47357 * 54.59580 * 18 16 15 40 40 H 1.09006 * 117.49839 * 359.97438 * 24 19 18 41 41 H 1.08990 * 117.49901 * 145.02466 * 24 19 18 42 42 H 1.09003 * 117.49952 * 214.97828 * 25 19 18 43 43 H 1.09007 * 117.50154 * 359.97438 * 25 19 18 44 44 H 1.08998 * 110.41107 * 201.69004 * 26 15 14 45 45 H 1.09006 * 110.40334 * 79.26232 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 7 1.6009 2.1268 1.2053 5 6 1.9558 3.4313 1.4239 6 1 2.5760 3.9495 0.7074 7 6 1.5185 4.0875 2.5662 8 7 0.7631 3.4558 3.4396 9 14 2.0032 5.8666 2.8648 10 1 0.9865 6.7647 2.2605 11 1 2.0814 6.1199 4.3260 12 1 3.3269 6.1297 2.2452 13 6 2.0663 -0.7714 1.2238 14 6 2.8797 -1.9437 0.6339 15 7 2.3141 -2.1438 -0.7225 16 6 2.0776 -3.3106 -1.3544 17 8 1.6068 -3.3102 -2.4721 18 6 2.3991 -4.6154 -0.6725 19 6 1.9149 -5.7779 -1.5415 20 6 0.4332 -6.1329 -1.4028 21 9 -0.3470 -5.0606 -1.8484 22 9 0.1512 -7.2664 -2.1728 23 9 0.1405 -6.3965 -0.0604 24 6 2.8954 -6.9240 -1.7985 25 6 2.5545 -5.9424 -2.9216 26 6 2.0667 -0.7721 -1.2244 27 1 -0.3634 0.5017 0.8968 28 1 -0.3633 0.5257 -0.8830 29 1 -0.3633 -1.0276 -0.0139 30 1 3.1527 1.4169 -0.0140 31 1 1.6966 1.9579 -0.8830 32 1 1.0442 1.6613 1.8490 33 1 0.4572 3.9144 4.2377 34 1 2.7095 -0.1287 1.8249 35 1 1.2398 -1.1489 1.8258 36 1 3.9353 -1.6796 0.5699 37 1 2.7473 -2.8406 1.2390 38 1 3.4765 -4.6940 -0.5279 39 1 1.8991 -4.6525 0.2954 40 1 3.8856 -6.8496 -1.3488 41 1 2.4849 -7.9312 -1.8687 42 1 1.9198 -6.3040 -3.7306 43 1 3.3200 -5.2222 -3.2106 44 1 1.3223 -0.7871 -2.0205 45 1 2.9949 -0.3241 -1.5793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569671905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:49 Heat of formation + Delta-G solvation = -149.033654 kcal Electronic energy + Delta-G solvation = -30074.009474 eV Core-core repulsion = 25484.662326 eV Total energy + Delta-G solvation = -4589.347148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.24052 -47.82340 -47.63231 -40.32991 -38.73851 -37.24840 -34.81979 -32.74870 -30.59798 -29.80342 -29.47632 -27.10142 -26.27494 -25.23777 -23.15696 -22.99966 -22.48698 -21.05541 -19.40680 -18.73939 -18.50229 -18.42274 -17.61565 -17.28799 -16.89928 -15.90863 -15.53885 -15.09789 -14.75447 -14.57512 -14.52504 -14.27282 -14.17619 -14.03183 -13.86705 -13.83526 -13.66885 -13.58144 -13.42946 -12.96850 -12.66314 -12.43622 -12.34276 -12.15909 -12.04019 -11.82201 -11.65641 -11.18084 -11.07249 -11.00912 -10.83454 -10.82311 -10.57346 -10.40286 -10.23653 -9.96055 -9.80957 -9.65631 -8.89197 -8.68231 -6.93470 -5.78584 -3.06835 2.47340 2.56044 2.69014 3.10171 3.42357 3.47819 3.49077 3.54007 3.66979 4.02977 4.10217 4.29214 4.49063 4.55760 4.64575 4.76703 4.91695 4.96367 5.06722 5.11070 5.15235 5.22610 5.31422 5.44895 5.47881 5.50874 5.58309 5.62148 5.78376 5.90996 5.94349 5.96449 6.13148 6.22035 6.28234 6.44090 6.58573 6.66800 6.79065 6.83388 7.54015 7.68686 8.10144 8.40615 9.52161 10.09604 10.44644 11.44261 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.002401 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.574026 B =11660.169982 C =11874.588157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C 0.167 3.833 4 N -0.729 5.729 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.125 4.125 14 C 0.098 3.902 15 N -0.620 5.620 16 C 0.529 3.471 17 O -0.529 6.529 18 C -0.099 4.099 19 C -0.189 4.189 20 C 0.489 3.511 21 F -0.166 7.166 22 F -0.184 7.184 23 F -0.182 7.182 24 C -0.148 4.148 25 C -0.119 4.119 26 C 0.117 3.883 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.021 0.979 31 H 0.021 0.979 32 H 0.385 0.615 33 H 0.255 0.745 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 -23.195 -8.975 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.081 4.081 3 C 0.039 3.961 4 N -0.374 5.374 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.163 4.163 14 C -0.025 4.025 15 N -0.354 5.354 16 C 0.317 3.683 17 O -0.406 6.406 18 C -0.138 4.138 19 C -0.191 4.191 20 C 0.435 3.565 21 F -0.147 7.147 22 F -0.165 7.165 23 F -0.164 7.164 24 C -0.185 4.185 25 C -0.156 4.156 26 C -0.005 4.005 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.130 0.870 44 H 0.100 0.900 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.071 -23.146 -9.647 25.583 hybrid contribution -0.289 0.937 0.696 1.202 sum 4.783 -22.209 -8.951 24.418 Atomic orbital electron populations 1.21774 0.93572 1.00481 1.02894 1.21670 0.96579 0.96156 0.93649 1.20653 0.95909 0.88366 0.91150 1.42358 1.61727 1.11350 1.21930 1.19220 1.25666 0.88301 1.03790 0.91240 1.24721 1.00539 0.98293 0.97386 1.69652 1.39861 1.36311 1.12391 0.86201 0.77982 0.85059 0.77004 1.21764 1.21817 1.20806 1.22646 1.00278 0.95845 0.97515 1.22570 0.98012 0.99336 0.82533 1.49033 1.62850 1.05668 1.17883 1.19950 0.78411 0.83885 0.86047 1.90732 1.44135 1.86763 1.18926 1.21114 1.03965 0.89726 0.99042 1.22029 0.89522 1.01964 1.05547 1.19369 0.89298 0.74411 0.73469 1.93272 1.76996 1.55423 1.89016 1.93148 1.94800 1.52778 1.75790 1.93175 1.94656 1.93989 1.34550 1.23324 0.98756 0.94395 1.02049 1.23005 1.01950 1.00721 0.89891 1.22422 1.00940 0.80153 0.97034 0.91218 0.92819 0.93710 0.96145 0.96138 0.78039 0.93528 0.88799 0.90985 0.90779 0.90662 0.86997 0.87746 0.86869 0.87270 0.87472 0.86964 0.89972 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.06 37.16 0.30 -1.81 16 2 C -0.08 -1.22 0.73 -153.11 -0.11 -1.34 16 3 C 0.17 3.18 4.91 -4.04 -0.02 3.16 16 4 N -0.73 -17.51 4.93 -59.91 -0.30 -17.80 16 5 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 9 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C -0.12 -1.74 5.78 -25.33 -0.15 -1.88 16 14 C 0.10 1.05 6.93 -2.31 -0.02 1.04 16 15 N -0.62 -7.71 3.32 -169.17 -0.56 -8.27 16 16 C 0.53 6.64 7.53 -10.99 -0.08 6.56 16 17 O -0.53 -8.27 14.25 5.56 0.08 -8.19 16 18 C -0.10 -0.87 4.72 -27.88 -0.13 -1.00 16 19 C -0.19 -1.71 1.35 -154.51 -0.21 -1.92 16 20 C 0.49 5.48 3.07 37.16 0.11 5.59 16 21 F -0.17 -2.34 15.81 2.25 0.04 -2.31 16 22 F -0.18 -1.97 15.90 2.25 0.04 -1.94 16 23 F -0.18 -2.05 16.81 2.25 0.04 -2.01 16 24 C -0.15 -0.90 9.60 -26.73 -0.26 -1.15 16 25 C -0.12 -0.96 8.49 -26.73 -0.23 -1.19 16 26 C 0.12 1.62 6.14 -2.41 -0.01 1.61 16 27 H 0.07 1.27 7.01 -51.93 -0.36 0.91 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.39 9.68 6.28 -40.82 -0.26 9.42 16 33 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.09 1.48 7.49 -51.93 -0.39 1.10 16 35 H 0.07 1.01 7.71 -51.93 -0.40 0.61 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.63 7.15 -51.93 -0.37 0.26 16 38 H 0.11 0.68 7.92 -51.93 -0.41 0.27 16 39 H 0.10 0.86 7.23 -51.93 -0.38 0.48 16 40 H 0.11 0.46 8.07 -51.93 -0.42 0.04 16 41 H 0.11 0.61 7.66 -51.93 -0.40 0.21 16 42 H 0.11 0.89 7.91 -51.93 -0.41 0.48 16 43 H 0.11 0.90 8.12 -51.92 -0.42 0.48 16 44 H 0.08 1.22 7.60 -51.93 -0.39 0.83 16 45 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 LS Contribution 372.55 15.07 5.61 5.61 Total: -1.00 -31.82 372.55 -7.08 -38.89 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.68 Total: 5.26 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.05 Total: 0.55 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.13 Total: -52.92 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.08 Total: -8.19 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.11 Total: -6.25 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.82 -7.08 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569671905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.140 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds