Wall clock time and date at job start Tue Mar 31 2020 20:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.38442 * 2 1 4 4 N 1.46496 * 109.47274 * 60.77433 * 3 2 1 5 5 C 1.36942 * 119.99636 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00184 * 0.02562 * 5 4 3 7 7 C 1.38810 * 119.99804 * 180.02562 * 5 4 3 8 8 N 1.31620 * 119.99938 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00264 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46852 * 90.00000 * 9 7 5 11 11 H 1.48499 * 109.47293 * 209.99927 * 9 7 5 12 12 H 1.48498 * 109.47063 * 330.00313 * 9 7 5 13 13 C 1.54284 * 110.34033 * 122.22634 * 2 1 3 14 14 C 1.54391 * 105.05266 * 118.82477 * 13 2 1 15 15 N 1.48318 * 104.53510 * 336.25761 * 14 13 2 16 16 C 1.34776 * 127.76857 * 219.52383 * 15 14 13 17 17 O 1.21281 * 119.99538 * 179.97438 * 16 15 14 18 18 C 1.50693 * 120.00133 * 359.92275 * 16 15 14 19 19 C 1.53004 * 109.47332 * 174.59643 * 18 16 15 20 20 C 1.52996 * 115.55038 * 277.32382 * 19 18 16 21 21 F 1.39897 * 109.47005 * 64.31146 * 20 19 18 22 22 F 1.39902 * 109.46778 * 184.30835 * 20 19 18 23 23 F 1.39896 * 109.47169 * 304.30666 * 20 19 18 24 24 C 1.53005 * 117.49878 * 131.61537 * 19 18 16 25 25 C 1.52996 * 117.49613 * 62.99255 * 19 18 16 26 26 C 1.48147 * 104.39289 * 39.45720 * 15 14 13 27 27 H 1.08999 * 109.47578 * 299.22340 * 1 2 3 28 28 H 1.08997 * 109.47262 * 59.23169 * 1 2 3 29 29 H 1.09004 * 109.46809 * 179.22391 * 1 2 3 30 30 H 1.09005 * 109.47321 * 180.77857 * 3 2 1 31 31 H 1.09005 * 109.46856 * 300.77387 * 3 2 1 32 32 H 0.96998 * 120.00173 * 0.02562 * 4 3 2 33 33 H 0.96999 * 119.99972 * 180.02562 * 8 7 5 34 34 H 1.09005 * 110.34529 * 237.74059 * 13 2 1 35 35 H 1.08995 * 110.34857 * 359.90115 * 13 2 1 36 36 H 1.09000 * 110.40900 * 94.96465 * 14 13 2 37 37 H 1.08997 * 110.40637 * 217.40391 * 14 13 2 38 38 H 1.08997 * 109.47527 * 294.60059 * 18 16 15 39 39 H 1.08999 * 109.47357 * 54.59580 * 18 16 15 40 40 H 1.09006 * 117.49839 * 359.97438 * 24 19 18 41 41 H 1.08990 * 117.49901 * 145.02466 * 24 19 18 42 42 H 1.09003 * 117.49952 * 214.97828 * 25 19 18 43 43 H 1.09007 * 117.50154 * 359.97438 * 25 19 18 44 44 H 1.08998 * 110.41107 * 201.69004 * 26 15 14 45 45 H 1.09006 * 110.40334 * 79.26232 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 7 1.6009 2.1268 1.2053 5 6 1.9558 3.4313 1.4239 6 1 2.5760 3.9495 0.7074 7 6 1.5185 4.0875 2.5662 8 7 0.7631 3.4558 3.4396 9 14 2.0032 5.8666 2.8648 10 1 0.9865 6.7647 2.2605 11 1 2.0814 6.1199 4.3260 12 1 3.3269 6.1297 2.2452 13 6 2.0663 -0.7714 1.2238 14 6 2.8797 -1.9437 0.6339 15 7 2.3141 -2.1438 -0.7225 16 6 2.0776 -3.3106 -1.3544 17 8 1.6068 -3.3102 -2.4721 18 6 2.3991 -4.6154 -0.6725 19 6 1.9149 -5.7779 -1.5415 20 6 0.4332 -6.1329 -1.4028 21 9 -0.3470 -5.0606 -1.8484 22 9 0.1512 -7.2664 -2.1728 23 9 0.1405 -6.3965 -0.0604 24 6 2.8954 -6.9240 -1.7985 25 6 2.5545 -5.9424 -2.9216 26 6 2.0667 -0.7721 -1.2244 27 1 -0.3634 0.5017 0.8968 28 1 -0.3633 0.5257 -0.8830 29 1 -0.3633 -1.0276 -0.0139 30 1 3.1527 1.4169 -0.0140 31 1 1.6966 1.9579 -0.8830 32 1 1.0442 1.6613 1.8490 33 1 0.4572 3.9144 4.2377 34 1 2.7095 -0.1287 1.8249 35 1 1.2398 -1.1489 1.8258 36 1 3.9353 -1.6796 0.5699 37 1 2.7473 -2.8406 1.2390 38 1 3.4765 -4.6940 -0.5279 39 1 1.8991 -4.6525 0.2954 40 1 3.8856 -6.8496 -1.3488 41 1 2.4849 -7.9312 -1.8687 42 1 1.9198 -6.3040 -3.7306 43 1 3.3200 -5.2222 -3.2106 44 1 1.3223 -0.7871 -2.0205 45 1 2.9949 -0.3241 -1.5793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569671905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:48 Heat of formation + Delta-G solvation = -167.538663 kcal Electronic energy + Delta-G solvation = -30074.811911 eV Core-core repulsion = 25484.662326 eV Total energy + Delta-G solvation = -4590.149585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.10836 -48.66632 -48.56790 -41.31778 -39.70584 -38.11214 -36.40320 -34.34161 -32.18491 -30.78234 -30.58019 -28.03895 -27.60434 -26.74437 -24.44309 -24.03437 -23.52957 -21.84963 -20.38050 -19.97367 -19.38685 -19.31068 -19.17204 -18.33662 -17.92085 -17.02649 -16.57906 -16.36461 -15.86720 -15.70854 -15.50615 -15.42250 -15.18729 -15.05500 -15.00732 -14.78446 -14.75151 -14.72890 -14.63227 -14.31900 -13.98990 -13.69166 -13.42768 -13.22075 -12.99427 -12.80368 -12.76976 -12.60155 -12.45817 -12.38844 -12.09172 -12.06061 -11.74495 -11.67282 -11.54759 -11.41317 -11.33559 -10.91151 -10.75632 -9.69509 -8.95027 -7.92348 -5.19725 1.49109 1.50233 1.58433 1.63611 1.70685 1.86834 2.40177 2.58238 2.78650 2.92762 3.36013 3.39470 3.42118 3.45271 3.68845 3.71076 3.79446 3.83878 4.07144 4.24148 4.30885 4.37628 4.41325 4.45266 4.48864 4.62648 4.69534 4.71849 4.74364 4.78514 4.86773 4.95202 4.98563 4.99779 5.07072 5.12429 5.15471 5.35822 5.41044 5.46161 5.53353 6.30173 6.60250 7.16294 7.37588 8.13733 8.37918 9.31072 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.002401 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.574026 B =11660.169982 C =11874.588157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C 0.168 3.832 4 N -0.738 5.738 5 C -0.241 4.241 6 H 0.074 0.926 7 C -0.074 4.074 8 N -0.968 5.968 9 Si 0.970 3.030 10 H -0.291 1.291 11 H -0.296 1.296 12 H -0.269 1.269 13 C -0.123 4.123 14 C 0.107 3.893 15 N -0.621 5.621 16 C 0.523 3.477 17 O -0.566 6.566 18 C -0.092 4.092 19 C -0.207 4.207 20 C 0.481 3.519 21 F -0.190 7.190 22 F -0.185 7.185 23 F -0.184 7.184 24 C -0.115 4.115 25 C -0.130 4.130 26 C 0.123 3.877 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.030 0.970 31 H 0.015 0.985 32 H 0.377 0.623 33 H 0.250 0.750 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.149 0.851 39 H 0.114 0.886 40 H 0.144 0.856 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.068 0.932 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.544 -24.714 -8.983 27.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.075 4.075 3 C 0.041 3.959 4 N -0.381 5.381 5 C -0.373 4.373 6 H 0.092 0.908 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.799 3.201 10 H -0.219 1.219 11 H -0.223 1.223 12 H -0.194 1.194 13 C -0.162 4.162 14 C -0.015 4.015 15 N -0.355 5.355 16 C 0.313 3.687 17 O -0.445 6.445 18 C -0.131 4.131 19 C -0.209 4.209 20 C 0.427 3.573 21 F -0.171 7.171 22 F -0.166 7.166 23 F -0.166 7.166 24 C -0.152 4.152 25 C -0.167 4.167 26 C 0.000 4.000 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.032 0.968 32 H 0.210 0.790 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.167 0.833 39 H 0.132 0.868 40 H 0.162 0.838 41 H 0.133 0.867 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.086 0.914 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.334 -24.684 -9.679 27.509 hybrid contribution -1.035 1.375 0.613 1.827 sum 6.299 -23.309 -9.066 25.791 Atomic orbital electron populations 1.21676 0.94455 1.00514 1.01319 1.21525 0.95730 0.94521 0.95677 1.20759 0.96235 0.90068 0.88824 1.42514 1.61593 1.10794 1.23216 1.19610 1.24650 0.89575 1.03469 0.90803 1.25487 1.01325 1.02170 0.97614 1.69802 1.41512 1.37737 1.12837 0.85194 0.78025 0.80449 0.76412 1.21856 1.22255 1.19417 1.22563 1.00283 0.96722 0.96591 1.22637 0.98070 0.99160 0.81621 1.49094 1.62890 1.05042 1.18453 1.20708 0.77374 0.84834 0.85757 1.90721 1.45653 1.87305 1.20773 1.21195 1.06305 0.86995 0.98584 1.22117 0.88312 1.03916 1.06530 1.19817 0.90438 0.73844 0.73238 1.93222 1.77925 1.56631 1.89316 1.93139 1.94943 1.52698 1.75818 1.93163 1.94814 1.93952 1.34623 1.23503 0.98971 0.93494 0.99211 1.23016 1.01944 1.01952 0.89744 1.22213 1.00896 0.81303 0.95585 0.93735 0.93300 0.92847 0.95240 0.96754 0.78988 0.94094 0.90687 0.91395 0.88884 0.87483 0.83284 0.86822 0.83843 0.86677 0.88501 0.86937 0.91380 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 8.06 71.98 0.58 -3.47 16 2 C -0.07 -2.24 0.73 -51.28 -0.04 -2.27 16 3 C 0.17 6.37 4.91 86.38 0.42 6.79 16 4 N -0.74 -35.87 4.93 -343.44 -1.69 -37.56 16 5 C -0.24 -13.13 9.99 84.03 0.84 -12.29 16 6 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 7 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 8 N -0.97 -58.15 13.06 21.65 0.28 -57.87 16 9 Si 0.97 45.56 29.55 68.60 2.03 47.58 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 13 C -0.12 -3.30 5.78 31.50 0.18 -3.12 16 14 C 0.11 1.95 6.93 86.50 0.60 2.55 16 15 N -0.62 -14.06 3.32 -807.52 -2.68 -16.74 16 16 C 0.52 12.06 7.53 87.65 0.66 12.72 16 17 O -0.57 -17.28 14.25 -3.03 -0.04 -17.33 16 18 C -0.09 -1.30 4.72 29.85 0.14 -1.16 16 19 C -0.21 -3.25 1.35 -52.18 -0.07 -3.32 16 20 C 0.48 10.27 3.07 71.98 0.22 10.49 16 21 F -0.19 -5.38 15.81 44.97 0.71 -4.67 16 22 F -0.18 -3.82 15.90 44.97 0.71 -3.11 16 23 F -0.18 -3.89 16.81 44.97 0.76 -3.13 16 24 C -0.12 -0.97 9.60 30.60 0.29 -0.68 16 25 C -0.13 -1.85 8.49 30.59 0.26 -1.59 16 26 C 0.12 3.29 6.14 86.53 0.53 3.82 16 27 H 0.04 1.68 7.01 -2.39 -0.02 1.67 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.03 1.09 8.12 -2.38 -0.02 1.07 16 31 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.38 19.44 6.28 -92.71 -0.58 18.86 16 33 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.07 2.32 7.49 -2.38 -0.02 2.31 16 35 H 0.07 1.86 7.71 -2.39 -0.02 1.84 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.11 1.33 7.15 -2.39 -0.02 1.31 16 38 H 0.15 1.00 7.92 -2.39 -0.02 0.98 16 39 H 0.11 1.44 7.23 -2.39 -0.02 1.43 16 40 H 0.14 0.38 8.07 -2.38 -0.02 0.36 16 41 H 0.11 0.88 7.66 -2.39 -0.02 0.86 16 42 H 0.10 1.55 7.91 -2.39 -0.02 1.53 16 43 H 0.11 1.59 8.12 -2.38 -0.02 1.57 16 44 H 0.07 2.02 7.60 -2.39 -0.02 2.00 16 45 H 0.08 2.03 7.85 -2.38 -0.02 2.02 16 Total: -1.00 -70.34 372.55 5.60 -64.74 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.43 Total: 23.30 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 5.09 Total: 4.79 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -4.09 Total: -112.18 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.04 Total: -17.33 kcal Atomic # 9 Polarization: -13.09 SS G_CDS: 2.18 Total: -10.91 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -70.34 5.60 -64.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569671905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.799 kcal (2) G-P(sol) polarization free energy of solvation -70.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds