Wall clock time and date at job start Tue Mar 31 2020 20:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46259 * 2 1 4 4 C 1.36939 * 119.99793 * 60.01824 * 3 2 1 5 5 H 1.07999 * 119.99920 * 0.02562 * 4 3 2 6 6 C 1.38808 * 119.99808 * 180.02562 * 4 3 2 7 7 N 1.31617 * 120.00352 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99933 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47284 * 90.00305 * 8 6 4 10 10 H 1.48504 * 109.47154 * 209.99925 * 8 6 4 11 11 H 1.48497 * 109.47123 * 330.00129 * 8 6 4 12 12 C 1.53035 * 109.46359 * 240.02601 * 2 1 3 13 13 C 1.53196 * 109.31302 * 178.61566 * 12 2 1 14 14 N 1.46917 * 108.77723 * 54.63666 * 13 12 2 15 15 C 1.34778 * 120.63730 * 126.36813 * 14 13 12 16 16 O 1.21699 * 119.99240 * 3.70774 * 15 14 13 17 17 C 1.46655 * 120.00606 * 183.43699 * 15 14 13 18 18 O 1.35390 * 126.11490 * 352.66051 * 17 15 14 19 19 C 1.34404 * 109.47574 * 179.84984 * 18 17 15 20 20 C 1.33892 * 108.55796 * 0.36878 * 19 18 17 21 21 C 1.35185 * 126.12292 * 172.97578 * 17 15 14 22 22 C 1.50725 * 130.57472 * 0.16395 * 21 17 15 23 23 C 1.53670 * 107.44331 * 164.17076 * 22 21 17 24 24 O 1.42905 * 109.98095 * 48.24386 * 23 22 21 25 25 C 1.43514 * 114.76743 * 287.63729 * 24 23 22 26 26 C 1.46927 * 118.73642 * 306.64178 * 14 13 12 27 27 C 1.52758 * 109.00988 * 53.31130 * 26 14 13 28 28 H 1.09003 * 109.46631 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47223 * 299.97301 * 1 2 3 30 30 H 1.09003 * 109.47014 * 59.97560 * 1 2 3 31 31 H 0.97002 * 120.00201 * 240.02821 * 3 2 1 32 32 H 0.97000 * 120.00203 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.49906 * 58.66028 * 12 2 1 34 34 H 1.09005 * 109.52512 * 298.57914 * 12 2 1 35 35 H 1.09000 * 109.58349 * 294.84476 * 13 12 2 36 36 H 1.09004 * 109.58329 * 174.42372 * 13 12 2 37 37 H 1.08006 * 125.71986 * 180.13233 * 19 18 17 38 38 H 1.09005 * 109.86165 * 283.65238 * 22 21 17 39 39 H 1.08997 * 109.86501 * 44.61285 * 22 21 17 40 40 H 1.08997 * 109.39220 * 168.40584 * 23 22 21 41 41 H 1.09009 * 109.38700 * 288.19611 * 23 22 21 42 42 H 1.09002 * 109.82315 * 171.04267 * 25 24 23 43 43 H 1.08998 * 109.82696 * 291.90475 * 25 24 23 44 44 H 1.09005 * 109.58573 * 173.14683 * 26 14 13 45 45 H 1.09005 * 109.58758 * 293.56968 * 26 14 13 46 46 H 1.08999 * 109.56967 * 185.55309 * 27 26 14 47 47 H 1.09001 * 109.38978 * 65.51482 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6875 2.2243 1.0273 5 1 1.0672 1.8707 1.8376 6 6 2.1495 3.5332 1.0270 7 7 2.9050 3.9643 0.0392 8 14 1.6991 4.6830 2.4286 9 1 2.7238 4.5840 3.4989 10 1 1.6426 6.0789 1.9251 11 1 0.3729 4.3002 2.9762 12 6 2.0399 -0.7209 -1.2499 13 6 3.5715 -0.6887 -1.2640 14 7 4.0679 -1.2488 0.0003 15 6 4.9615 -2.2577 0.0005 16 8 5.4158 -2.6683 -1.0512 17 6 5.3908 -2.8568 1.2684 18 8 5.0817 -2.4085 2.5080 19 6 5.6469 -3.2090 3.4279 20 6 6.3289 -4.1712 2.7942 21 6 6.1708 -3.9520 1.4086 22 6 6.8064 -4.8422 0.3716 23 6 7.8885 -5.6733 1.0787 24 8 7.3588 -6.2481 2.2750 25 6 7.1405 -5.3162 3.3444 26 6 3.5671 -0.6921 1.2644 27 6 2.0399 -0.7205 1.2502 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3633 0.5142 -0.8898 31 1 2.5754 1.6988 -0.7277 32 1 3.2276 4.8791 0.0389 33 1 1.6573 -0.2210 -2.1397 34 1 1.6980 -1.7558 -1.2386 35 1 3.9143 0.3408 -1.3673 36 1 3.9418 -1.2847 -2.0981 37 1 5.5677 -3.0930 4.4988 38 1 6.0547 -5.5033 -0.0598 39 1 7.2581 -4.2340 -0.4120 40 1 8.2262 -6.4683 0.4140 41 1 8.7316 -5.0300 1.3308 42 1 6.5936 -5.8022 4.1523 43 1 8.0971 -4.9481 3.7150 44 1 3.9347 -1.2904 2.0982 45 1 3.9097 0.3372 1.3716 46 1 1.6571 -0.2204 2.1399 47 1 1.6973 -1.7552 1.2389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570377870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:58 Heat of formation + Delta-G solvation = -36.978844 kcal Electronic energy + Delta-G solvation = -30213.838718 eV Core-core repulsion = 26171.207372 eV Total energy + Delta-G solvation = -4042.631346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.97717 -39.80772 -38.75173 -37.83104 -34.68590 -33.63719 -32.47110 -32.19039 -30.89977 -29.49010 -28.95746 -27.66742 -26.47896 -24.46015 -23.79846 -23.23731 -22.91343 -21.66697 -20.01856 -19.66716 -18.39728 -17.28347 -17.10445 -16.63984 -16.50378 -16.31711 -15.70470 -15.48575 -15.10455 -14.90967 -14.48052 -14.03722 -13.79428 -13.77938 -13.61284 -13.44311 -13.17135 -13.03607 -12.82070 -12.59397 -12.36158 -11.92130 -11.71378 -11.51724 -11.32163 -11.24710 -11.12184 -10.91958 -10.80626 -10.71709 -10.35011 -10.29991 -10.00299 -9.83152 -9.69782 -9.57122 -9.53263 -8.96103 -8.77540 -8.23780 -6.99311 -5.80094 -3.08623 1.05967 2.10635 2.58768 3.22437 3.32385 3.39445 3.45348 3.47013 3.54171 4.27933 4.42262 4.55116 4.64878 4.75794 4.97677 5.06135 5.07466 5.18330 5.29371 5.32435 5.38588 5.43246 5.55344 5.58486 5.63498 5.64776 5.76242 5.79656 5.87617 5.92113 6.03772 6.08153 6.19441 6.23024 6.24332 6.38449 6.47711 6.52641 6.56363 6.68184 6.77936 6.87232 6.91246 6.98757 7.05361 7.62966 7.68073 8.21564 8.38100 9.49792 10.06340 10.41845 11.42448 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.003242 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.240053 B = 8635.291286 C = 9315.275292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.197 3.803 3 N -0.717 5.717 4 C -0.232 4.232 5 H 0.070 0.930 6 C -0.012 4.012 7 N -0.932 5.932 8 Si 0.902 3.098 9 H -0.291 1.291 10 H -0.293 1.293 11 H -0.283 1.283 12 C -0.130 4.130 13 C 0.116 3.884 14 N -0.585 5.585 15 C 0.594 3.406 16 O -0.535 6.535 17 C -0.052 4.052 18 O -0.153 6.153 19 C 0.002 3.998 20 C -0.240 4.240 21 C -0.092 4.092 22 C -0.086 4.086 23 C 0.063 3.937 24 O -0.381 6.381 25 C 0.137 3.863 26 C 0.099 3.901 27 C -0.133 4.133 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.384 0.616 32 H 0.254 0.746 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.208 0.792 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.053 0.947 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.531 -18.005 4.734 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.105 3.895 3 N -0.359 5.359 4 C -0.363 4.363 5 H 0.088 0.912 6 C -0.208 4.208 7 N -0.580 5.580 8 Si 0.733 3.267 9 H -0.218 1.218 10 H -0.219 1.219 11 H -0.209 1.209 12 C -0.168 4.168 13 C -0.005 4.005 14 N -0.315 5.315 15 C 0.382 3.618 16 O -0.415 6.415 17 C -0.103 4.103 18 O -0.050 6.050 19 C -0.067 4.067 20 C -0.241 4.241 21 C -0.095 4.095 22 C -0.123 4.123 23 C -0.013 4.013 24 O -0.299 6.299 25 C 0.060 3.940 26 C -0.022 4.022 27 C -0.173 4.173 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.219 0.781 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.225 0.775 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.072 0.928 42 H 0.123 0.877 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.095 0.905 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.468 -18.021 4.357 19.636 hybrid contribution -0.135 1.262 0.809 1.505 sum 6.333 -16.759 5.165 18.646 Atomic orbital electron populations 1.22216 0.97512 0.99012 1.02166 1.19549 0.92204 0.86251 0.91471 1.42513 1.60703 1.05737 1.26961 1.19111 1.25459 0.91627 1.00138 0.91170 1.24694 1.00617 0.97349 0.98129 1.69646 1.39380 1.16803 1.32215 0.86276 0.77883 0.80721 0.81817 1.21846 1.21908 1.20858 1.22099 0.94681 1.00495 0.99526 1.21665 0.94245 0.99668 0.84968 1.48043 1.41210 1.33098 1.09165 1.16693 0.79845 0.79761 0.85505 1.90811 1.57101 1.63517 1.30054 1.21524 1.05798 0.99011 0.83979 1.84623 1.58968 1.46911 1.14481 1.23804 0.96462 0.91129 0.95293 1.20945 1.06978 1.02085 0.94123 1.20119 0.98650 0.95796 0.94923 1.20861 0.98552 0.96833 0.96022 1.22697 0.94601 0.97777 0.86273 1.87967 1.84996 1.34160 1.22779 1.21015 0.97035 0.86669 0.89269 1.22233 0.95329 1.00712 0.83894 1.22225 0.94556 0.99151 1.01388 0.94588 0.92526 0.93091 0.78140 0.93561 0.90524 0.91868 0.90063 0.89653 0.77520 0.89408 0.88334 0.88168 0.92818 0.87738 0.91631 0.88737 0.88986 0.90535 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.44 37.16 0.31 -2.31 16 2 C 0.20 3.60 0.74 -131.78 -0.10 3.50 16 3 N -0.72 -16.27 4.14 -47.19 -0.20 -16.46 16 4 C -0.23 -5.89 8.68 -15.06 -0.13 -6.03 16 5 H 0.07 1.75 6.70 -52.49 -0.35 1.39 16 6 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 7 N -0.93 -26.92 13.06 55.49 0.72 -26.19 16 8 Si 0.90 21.58 29.55 -169.99 -5.02 16.56 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C -0.13 -2.10 4.96 -26.61 -0.13 -2.23 16 13 C 0.12 1.97 6.15 -3.71 -0.02 1.95 16 14 N -0.58 -10.06 2.98 -174.58 -0.52 -10.58 16 15 C 0.59 10.28 7.66 -12.86 -0.10 10.18 16 16 O -0.53 -10.01 15.01 5.19 0.08 -9.93 16 17 C -0.05 -0.80 6.83 -37.27 -0.25 -1.06 16 18 O -0.15 -2.11 7.12 2.33 0.02 -2.09 16 19 C 0.00 0.02 12.06 29.21 0.35 0.37 16 20 C -0.24 -2.71 6.04 -105.02 -0.63 -3.34 16 21 C -0.09 -1.26 6.02 -104.59 -0.63 -1.89 16 22 C -0.09 -1.03 5.78 -27.52 -0.16 -1.19 16 23 C 0.06 0.61 6.75 37.51 0.25 0.86 16 24 O -0.38 -4.15 10.70 -35.23 -0.38 -4.53 16 25 C 0.14 1.22 7.27 36.03 0.26 1.48 16 26 C 0.10 1.71 6.03 -3.93 -0.02 1.69 16 27 C -0.13 -2.28 4.69 -26.83 -0.13 -2.40 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.06 7.27 -51.93 -0.38 0.68 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.38 9.44 6.46 -40.82 -0.26 9.17 16 32 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.51 6.94 -51.93 -0.36 1.15 16 36 H 0.09 1.40 7.02 -51.93 -0.36 1.03 16 37 H 0.21 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.10 1.23 7.52 -51.93 -0.39 0.84 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.48 8.08 -51.92 -0.42 0.06 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.10 1.50 3.77 -55.27 -0.21 1.30 16 45 H 0.09 1.87 7.74 -51.93 -0.40 1.47 16 46 H 0.08 1.37 7.31 -51.93 -0.38 0.99 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -30.83 365.95 -7.89 -38.71 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.88 Total: 9.81 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.22 Total: -0.81 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.01 Total: -53.23 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.28 Total: -16.55 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.83 -7.89 -38.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570377870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.733 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds