Wall clock time and date at job start Tue Mar 31 2020 20:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46259 * 2 1 4 4 C 1.36939 * 119.99793 * 60.01824 * 3 2 1 5 5 H 1.07999 * 119.99920 * 0.02562 * 4 3 2 6 6 C 1.38808 * 119.99808 * 180.02562 * 4 3 2 7 7 N 1.31617 * 120.00352 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99933 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47284 * 90.00305 * 8 6 4 10 10 H 1.48504 * 109.47154 * 209.99925 * 8 6 4 11 11 H 1.48497 * 109.47123 * 330.00129 * 8 6 4 12 12 C 1.53035 * 109.46359 * 240.02601 * 2 1 3 13 13 C 1.53196 * 109.31302 * 178.61566 * 12 2 1 14 14 N 1.46917 * 108.77723 * 54.63666 * 13 12 2 15 15 C 1.34778 * 120.63730 * 126.36813 * 14 13 12 16 16 O 1.21699 * 119.99240 * 3.70774 * 15 14 13 17 17 C 1.46655 * 120.00606 * 183.43699 * 15 14 13 18 18 O 1.35390 * 126.11490 * 352.66051 * 17 15 14 19 19 C 1.34404 * 109.47574 * 179.84984 * 18 17 15 20 20 C 1.33892 * 108.55796 * 0.36878 * 19 18 17 21 21 C 1.35185 * 126.12292 * 172.97578 * 17 15 14 22 22 C 1.50725 * 130.57472 * 0.16395 * 21 17 15 23 23 C 1.53670 * 107.44331 * 164.17076 * 22 21 17 24 24 O 1.42905 * 109.98095 * 48.24386 * 23 22 21 25 25 C 1.43514 * 114.76743 * 287.63729 * 24 23 22 26 26 C 1.46927 * 118.73642 * 306.64178 * 14 13 12 27 27 C 1.52758 * 109.00988 * 53.31130 * 26 14 13 28 28 H 1.09003 * 109.46631 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47223 * 299.97301 * 1 2 3 30 30 H 1.09003 * 109.47014 * 59.97560 * 1 2 3 31 31 H 0.97002 * 120.00201 * 240.02821 * 3 2 1 32 32 H 0.97000 * 120.00203 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.49906 * 58.66028 * 12 2 1 34 34 H 1.09005 * 109.52512 * 298.57914 * 12 2 1 35 35 H 1.09000 * 109.58349 * 294.84476 * 13 12 2 36 36 H 1.09004 * 109.58329 * 174.42372 * 13 12 2 37 37 H 1.08006 * 125.71986 * 180.13233 * 19 18 17 38 38 H 1.09005 * 109.86165 * 283.65238 * 22 21 17 39 39 H 1.08997 * 109.86501 * 44.61285 * 22 21 17 40 40 H 1.08997 * 109.39220 * 168.40584 * 23 22 21 41 41 H 1.09009 * 109.38700 * 288.19611 * 23 22 21 42 42 H 1.09002 * 109.82315 * 171.04267 * 25 24 23 43 43 H 1.08998 * 109.82696 * 291.90475 * 25 24 23 44 44 H 1.09005 * 109.58573 * 173.14683 * 26 14 13 45 45 H 1.09005 * 109.58758 * 293.56968 * 26 14 13 46 46 H 1.08999 * 109.56967 * 185.55309 * 27 26 14 47 47 H 1.09001 * 109.38978 * 65.51482 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6875 2.2243 1.0273 5 1 1.0672 1.8707 1.8376 6 6 2.1495 3.5332 1.0270 7 7 2.9050 3.9643 0.0392 8 14 1.6991 4.6830 2.4286 9 1 2.7238 4.5840 3.4989 10 1 1.6426 6.0789 1.9251 11 1 0.3729 4.3002 2.9762 12 6 2.0399 -0.7209 -1.2499 13 6 3.5715 -0.6887 -1.2640 14 7 4.0679 -1.2488 0.0003 15 6 4.9615 -2.2577 0.0005 16 8 5.4158 -2.6683 -1.0512 17 6 5.3908 -2.8568 1.2684 18 8 5.0817 -2.4085 2.5080 19 6 5.6469 -3.2090 3.4279 20 6 6.3289 -4.1712 2.7942 21 6 6.1708 -3.9520 1.4086 22 6 6.8064 -4.8422 0.3716 23 6 7.8885 -5.6733 1.0787 24 8 7.3588 -6.2481 2.2750 25 6 7.1405 -5.3162 3.3444 26 6 3.5671 -0.6921 1.2644 27 6 2.0399 -0.7205 1.2502 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3633 0.5142 -0.8898 31 1 2.5754 1.6988 -0.7277 32 1 3.2276 4.8791 0.0389 33 1 1.6573 -0.2210 -2.1397 34 1 1.6980 -1.7558 -1.2386 35 1 3.9143 0.3408 -1.3673 36 1 3.9418 -1.2847 -2.0981 37 1 5.5677 -3.0930 4.4988 38 1 6.0547 -5.5033 -0.0598 39 1 7.2581 -4.2340 -0.4120 40 1 8.2262 -6.4683 0.4140 41 1 8.7316 -5.0300 1.3308 42 1 6.5936 -5.8022 4.1523 43 1 8.0971 -4.9481 3.7150 44 1 3.9347 -1.2904 2.0982 45 1 3.9097 0.3372 1.3716 46 1 1.6571 -0.2204 2.1399 47 1 1.6973 -1.7552 1.2389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570377870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:57 Heat of formation + Delta-G solvation = -56.644754 kcal Electronic energy + Delta-G solvation = -30214.691496 eV Core-core repulsion = 26171.207372 eV Total energy + Delta-G solvation = -4043.484124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.95988 -41.17248 -39.56694 -39.26113 -36.18142 -34.66682 -34.18819 -33.16257 -32.22718 -30.96475 -30.38758 -29.01007 -27.24845 -25.99774 -25.26130 -24.37887 -24.21434 -22.90383 -21.11129 -20.71366 -19.80132 -19.03440 -18.46065 -17.65780 -17.61959 -17.21578 -16.88366 -16.56234 -16.27175 -16.06983 -15.91636 -15.57173 -15.41455 -15.04634 -14.94417 -14.50672 -14.43623 -14.20905 -14.09240 -13.67054 -13.57636 -13.27193 -13.05305 -12.84726 -12.70105 -12.68102 -12.56210 -12.55372 -12.17005 -12.10905 -11.94124 -11.74033 -11.49864 -11.27695 -11.11553 -10.82291 -10.79684 -10.49796 -9.88924 -9.52572 -8.90864 -7.86322 -5.12353 -0.02191 1.21714 1.49071 1.49791 1.52637 1.57261 1.97993 2.09579 2.60563 2.82850 3.36038 3.41055 3.47923 3.74445 3.81732 3.91912 3.96315 3.98865 4.14969 4.19257 4.23129 4.32258 4.37184 4.41934 4.51898 4.60744 4.62711 4.70997 4.73350 4.81837 4.83410 4.88856 4.95708 4.99792 5.01902 5.05563 5.12770 5.19001 5.24934 5.31700 5.38464 5.54221 5.62512 5.66253 5.82104 6.14620 6.30164 6.35490 6.89141 7.42722 8.18410 8.42060 9.37456 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.003242 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.240053 B = 8635.291286 C = 9315.275292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.187 3.813 3 N -0.724 5.724 4 C -0.211 4.211 5 H 0.078 0.922 6 C -0.077 4.077 7 N -0.971 5.971 8 Si 0.958 3.042 9 H -0.291 1.291 10 H -0.304 1.304 11 H -0.270 1.270 12 C -0.120 4.120 13 C 0.119 3.881 14 N -0.589 5.589 15 C 0.592 3.408 16 O -0.558 6.558 17 C -0.091 4.091 18 O -0.168 6.168 19 C 0.022 3.978 20 C -0.250 4.250 21 C -0.093 4.093 22 C -0.089 4.089 23 C 0.067 3.933 24 O -0.395 6.395 25 C 0.135 3.865 26 C 0.108 3.892 27 C -0.126 4.126 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.371 0.629 32 H 0.245 0.755 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.255 0.745 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.062 0.938 42 H 0.130 0.870 43 H 0.085 0.915 44 H 0.114 0.886 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.305 -20.518 6.978 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.098 3.902 3 N -0.365 5.365 4 C -0.343 4.343 5 H 0.095 0.905 6 C -0.268 4.268 7 N -0.623 5.623 8 Si 0.789 3.211 9 H -0.219 1.219 10 H -0.232 1.232 11 H -0.195 1.195 12 C -0.158 4.158 13 C -0.003 4.003 14 N -0.319 5.319 15 C 0.381 3.619 16 O -0.440 6.440 17 C -0.142 4.142 18 O -0.066 6.066 19 C -0.046 4.046 20 C -0.252 4.252 21 C -0.096 4.096 22 C -0.126 4.126 23 C -0.009 4.009 24 O -0.314 6.314 25 C 0.059 3.941 26 C -0.013 4.013 27 C -0.166 4.166 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.204 0.796 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.271 0.729 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.147 0.853 43 H 0.103 0.897 44 H 0.131 0.869 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.210 -20.584 6.625 22.498 hybrid contribution -0.024 1.890 0.157 1.897 sum 6.186 -18.694 6.782 20.826 Atomic orbital electron populations 1.22124 0.96272 1.00738 1.01093 1.19857 0.92958 0.84271 0.93151 1.42685 1.60504 1.07396 1.25904 1.19425 1.23173 0.91575 1.00122 0.90452 1.25361 1.01929 0.99147 1.00393 1.69803 1.41717 1.16490 1.34323 0.85347 0.77994 0.78343 0.79373 1.21903 1.23179 1.19517 1.22029 0.93777 1.01347 0.98666 1.21561 0.94967 0.98312 0.85459 1.48054 1.41527 1.33333 1.08957 1.16962 0.79204 0.79416 0.86273 1.90779 1.57765 1.64264 1.31238 1.21166 1.08517 1.00551 0.83935 1.84484 1.59786 1.47920 1.14422 1.24745 0.93993 0.89319 0.96504 1.21302 1.07693 1.03289 0.92896 1.20541 0.97278 0.94980 0.96801 1.20919 0.99119 0.96722 0.95821 1.22745 0.93676 0.98221 0.86273 1.87951 1.85078 1.35045 1.23319 1.21317 0.97926 0.85766 0.89124 1.22076 0.95498 0.98955 0.84784 1.22138 0.94218 1.00087 1.00126 0.91454 0.93882 0.93860 0.79583 0.94570 0.90107 0.89787 0.92585 0.89199 0.72877 0.89958 0.89510 0.86188 0.91972 0.85262 0.89687 0.86907 0.92784 0.91269 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 8.44 71.98 0.61 -4.14 16 2 C 0.19 6.71 0.74 3.63 0.00 6.71 16 3 N -0.72 -33.35 4.14 -303.22 -1.25 -34.60 16 4 C -0.21 -10.77 8.68 84.03 0.73 -10.04 16 5 H 0.08 3.79 6.70 -2.91 -0.02 3.77 16 6 C -0.08 -4.22 5.50 84.86 0.47 -3.75 16 7 N -0.97 -58.02 13.06 21.65 0.28 -57.74 16 8 Si 0.96 45.01 29.55 68.60 2.03 47.03 16 9 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 10 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 12 C -0.12 -3.79 4.96 30.67 0.15 -3.64 16 13 C 0.12 4.13 6.15 86.37 0.53 4.66 16 14 N -0.59 -20.49 2.98 -824.46 -2.46 -22.95 16 15 C 0.59 20.74 7.66 86.44 0.66 21.40 16 16 O -0.56 -21.41 15.01 -4.34 -0.07 -21.48 16 17 C -0.09 -2.76 6.83 23.77 0.16 -2.60 16 18 O -0.17 -4.36 7.12 -14.56 -0.10 -4.47 16 19 C 0.02 0.39 12.06 66.83 0.81 1.19 16 20 C -0.25 -4.93 6.04 -20.12 -0.12 -5.05 16 21 C -0.09 -2.44 6.02 -19.84 -0.12 -2.56 16 22 C -0.09 -2.07 5.78 30.08 0.17 -1.90 16 23 C 0.07 1.17 6.75 72.21 0.49 1.66 16 24 O -0.40 -7.51 10.70 -148.98 -1.59 -9.10 16 25 C 0.13 1.91 7.27 71.25 0.52 2.43 16 26 C 0.11 3.73 6.03 86.22 0.52 4.25 16 27 C -0.13 -4.14 4.69 30.53 0.14 -4.00 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.04 1.53 7.27 -2.39 -0.02 1.51 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.37 18.93 6.46 -92.71 -0.60 18.33 16 32 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.08 2.33 8.14 -2.38 -0.02 2.32 16 35 H 0.06 2.21 6.94 -2.39 -0.02 2.20 16 36 H 0.09 3.01 7.02 -2.38 -0.02 2.99 16 37 H 0.26 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.08 1.98 8.14 -2.38 -0.02 1.97 16 39 H 0.09 2.21 7.52 -2.39 -0.02 2.19 16 40 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.06 0.97 8.08 -2.38 -0.02 0.95 16 42 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.11 3.51 3.77 -55.37 -0.21 3.30 16 45 H 0.05 2.27 7.74 -2.38 -0.02 2.25 16 46 H 0.07 2.38 7.31 -2.39 -0.02 2.37 16 47 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -68.71 365.95 2.76 -65.95 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: 0.20 Total: 32.73 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 5.72 Total: 4.62 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -3.43 Total: -115.28 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -1.76 Total: -35.05 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -68.71 2.76 -65.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570377870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.304 kcal (2) G-P(sol) polarization free energy of solvation -68.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds