Wall clock time and date at job start Tue Mar 31 2020 20:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00424 * 2 1 4 4 N 1.46899 * 109.46973 * 124.61412 * 3 2 1 5 5 C 1.46902 * 110.99890 * 199.73986 * 4 3 2 6 6 C 1.50698 * 109.47312 * 66.04975 * 5 4 3 7 7 H 1.08007 * 119.99555 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00133 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00131 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99707 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47176 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46671 * 120.00167 * 10 8 6 13 13 H 1.48502 * 109.46937 * 239.99656 * 10 8 6 14 14 C 1.46905 * 111.00048 * 75.78843 * 4 3 2 15 15 H 1.08998 * 109.46629 * 317.12558 * 14 4 3 16 16 C 1.53001 * 109.47060 * 77.12161 * 14 4 3 17 17 C 1.50695 * 109.47409 * 197.12693 * 14 4 3 18 18 O 1.21419 * 119.99406 * 341.35393 * 17 14 4 19 19 C 1.41547 * 120.00060 * 161.35231 * 17 14 4 20 20 N 1.38007 * 125.97879 * 0.02562 * 19 17 14 21 21 H 0.96997 * 125.36909 * 0.02562 * 20 19 17 22 22 C 1.34106 * 109.26418 * 179.75210 * 20 19 17 23 23 C 1.50700 * 125.65486 * 180.21954 * 22 20 19 24 24 C 1.38415 * 108.68980 * 0.24448 * 22 20 19 25 25 C 1.47273 * 126.40967 * 179.97438 * 24 22 20 26 26 O 1.21530 * 120.00021 * 90.02747 * 25 24 22 27 27 O 1.34758 * 120.00394 * 270.02330 * 25 24 22 28 28 C 1.37823 * 125.97699 * 180.20086 * 19 17 14 29 29 C 1.50707 * 126.58991 * 359.97438 * 28 19 17 30 30 H 1.08000 * 119.99429 * 359.97438 * 1 2 3 31 31 H 1.07989 * 120.00346 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.99559 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47093 * 4.61375 * 3 2 1 34 34 H 1.09003 * 109.46886 * 244.61485 * 3 2 1 35 35 H 1.08999 * 109.47015 * 186.04932 * 5 4 3 36 36 H 1.09005 * 109.47192 * 306.04582 * 5 4 3 37 37 H 0.96995 * 119.99795 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.46816 * 179.97438 * 16 14 4 39 39 H 1.08999 * 109.47511 * 300.00348 * 16 14 4 40 40 H 1.09005 * 109.46928 * 60.00268 * 16 14 4 41 41 H 1.08999 * 109.47178 * 90.02930 * 23 22 20 42 42 H 1.09003 * 109.47621 * 210.02594 * 23 22 20 43 43 H 1.09000 * 109.47565 * 330.02796 * 23 22 20 44 44 H 0.96698 * 117.00717 * 180.02562 * 27 25 24 45 45 H 1.08998 * 109.46736 * 270.30546 * 29 28 19 46 46 H 1.09000 * 109.46960 * 30.30801 * 29 28 19 47 47 H 1.09000 * 109.47148 * 150.31084 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9898 1.3356 1.1398 5 6 3.3885 2.7134 1.4573 6 6 2.1895 3.4827 1.9489 7 1 1.2276 2.9966 2.0189 8 6 2.3208 4.8068 2.3103 9 7 3.4922 5.3985 2.2256 10 14 0.8343 5.7605 2.9190 11 1 -0.3564 4.8732 2.9205 12 1 1.0898 6.2477 4.2984 13 1 0.5883 6.9186 2.0226 14 6 4.1657 0.4927 0.8855 15 1 3.8485 -0.4454 0.4300 16 6 5.1208 1.2220 -0.0614 17 6 4.8696 0.2065 2.1868 18 8 4.6602 0.9061 3.1569 19 6 5.7748 -0.8779 2.2783 20 7 6.1037 -1.7477 1.2586 21 1 5.7495 -1.7146 0.3562 22 6 6.9947 -2.6424 1.7103 23 6 7.6065 -3.7577 0.9023 24 6 7.2587 -2.3720 3.0419 25 6 8.1798 -3.1147 3.9187 26 8 9.3463 -2.7824 3.9953 27 8 7.7293 -4.1627 4.6362 28 6 6.4795 -1.2518 3.4022 29 6 6.4320 -0.5880 4.7544 30 1 -0.5399 0.9354 0.0004 31 1 -0.5400 -0.9352 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3583 2.1319 0.0827 34 1 2.6268 1.3993 -0.9285 35 1 4.1547 2.7004 2.2325 36 1 3.7854 3.1922 0.5622 37 1 3.5845 6.3299 2.4802 38 1 5.9935 0.5967 -0.2498 39 1 4.6117 1.4290 -1.0027 40 1 5.4380 2.1602 0.3940 41 1 8.5220 -3.4033 0.4287 42 1 7.8383 -4.5969 1.5583 43 1 6.9020 -4.0798 0.1355 44 1 8.3710 -4.6187 5.1977 45 1 7.1882 0.1957 4.8011 46 1 5.4457 -0.1509 4.9101 47 1 6.6279 -1.3286 5.5298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:02 Heat of formation + Delta-G solvation = -55.379156 kcal Electronic energy + Delta-G solvation = -29460.866652 eV Core-core repulsion = 25417.437409 eV Total energy + Delta-G solvation = -4043.429244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.91723 -39.93855 -39.04088 -36.84804 -36.13771 -33.46937 -33.06109 -32.73548 -32.05102 -30.00502 -28.33704 -27.03039 -26.97124 -25.13359 -24.53926 -23.28850 -21.51340 -20.43149 -19.91608 -19.26722 -18.75788 -18.04316 -17.31298 -16.48839 -16.22587 -15.70845 -15.47181 -15.22828 -14.81217 -14.59997 -14.33182 -14.10299 -13.84970 -13.58763 -13.41780 -13.32439 -13.15843 -13.06246 -12.80061 -12.44746 -12.31805 -12.21694 -11.99884 -11.87362 -11.75899 -11.59932 -11.54842 -11.27816 -10.96756 -10.90200 -10.72088 -10.49486 -10.28076 -9.86892 -9.35452 -9.08639 -9.05006 -8.76608 -8.34694 -8.23314 -7.26520 -5.95701 -3.95023 1.15773 1.97023 1.97311 2.66948 2.70027 3.18710 3.28336 3.35034 3.42758 3.47293 4.28451 4.36601 4.49105 4.64296 4.95697 4.96513 5.08287 5.10717 5.23422 5.31817 5.38079 5.40489 5.42132 5.43894 5.53642 5.58702 5.69469 5.81951 5.86142 5.88504 6.01661 6.11531 6.19360 6.21492 6.29453 6.43112 6.44857 6.51580 6.70277 6.97063 7.09378 7.21275 7.30430 7.34036 7.75491 7.84237 8.03387 8.18214 8.21582 8.57791 9.11349 9.67459 11.15511 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.003243 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.816091 B = 8632.123436 C = 9694.010680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 C 0.079 3.921 4 N -0.511 5.511 5 C 0.186 3.814 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.286 1.286 14 C 0.036 3.964 15 H 0.083 0.917 16 C -0.179 4.179 17 C 0.416 3.584 18 O -0.402 6.402 19 C -0.070 4.070 20 N -0.511 5.511 21 H 0.424 0.576 22 C 0.110 3.890 23 C -0.098 4.098 24 C -0.220 4.220 25 C 0.568 3.432 26 O -0.507 6.507 27 O -0.510 6.510 28 C -0.023 4.023 29 C -0.100 4.100 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.032 0.968 35 H 0.055 0.945 36 H -0.009 1.009 37 H 0.259 0.741 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.408 0.592 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.071 -20.560 -4.503 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.153 4.153 3 C -0.048 4.048 4 N -0.235 5.235 5 C 0.062 3.938 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.213 1.213 14 C -0.074 4.074 15 H 0.101 0.899 16 C -0.238 4.238 17 C 0.290 3.710 18 O -0.272 6.272 19 C -0.179 4.179 20 N -0.106 5.106 21 H 0.263 0.737 22 C -0.013 4.013 23 C -0.155 4.155 24 C -0.228 4.228 25 C 0.410 3.590 26 O -0.395 6.395 27 O -0.321 6.321 28 C -0.030 4.030 29 C -0.157 4.157 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.009 0.991 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.266 0.734 45 H 0.095 0.905 46 H 0.112 0.888 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.713 -19.792 -3.882 21.257 hybrid contribution 0.014 0.481 -0.527 0.713 sum 6.727 -19.311 -4.408 20.919 Atomic orbital electron populations 1.23713 0.95973 1.01300 1.02556 1.22950 0.95936 0.98253 0.98137 1.21270 0.96146 0.95717 0.91712 1.62279 1.10971 1.14797 1.35463 1.19992 0.97709 0.80394 0.95725 1.21159 0.95359 0.94750 1.42788 0.92012 1.24936 0.95873 0.97694 0.95980 1.69962 1.22816 1.11982 1.48984 0.86504 0.83061 0.79741 0.78484 1.19717 1.21030 1.21268 1.22003 0.93099 0.98636 0.93692 0.89944 1.22355 0.98821 1.02457 1.00124 1.19999 0.79225 0.81307 0.90447 1.90650 1.55727 1.43094 1.37775 1.19925 1.08933 1.00246 0.88799 1.41603 1.33046 1.23283 1.12685 0.73676 1.20503 0.93837 0.93882 0.93123 1.20559 1.01034 0.94455 0.99447 1.18159 1.08811 1.02774 0.93069 1.20012 0.85557 0.76765 0.76638 1.90907 1.18878 1.66165 1.63512 1.84729 1.47252 1.43687 1.56441 1.20043 0.93630 0.93815 0.95514 1.20513 1.04974 0.99754 0.90413 0.88478 0.89284 0.88744 0.88619 0.95018 0.92751 0.99112 0.93116 0.93281 0.91522 0.90260 0.89617 0.89679 0.90330 0.73364 0.90475 0.88815 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.85 14.32 29.01 0.42 -2.43 16 2 C -0.13 -2.06 9.33 -36.03 -0.34 -2.40 16 3 C 0.08 1.45 5.16 -4.98 -0.03 1.43 16 4 N -0.51 -10.65 4.13 -230.91 -0.95 -11.60 16 5 C 0.19 4.78 3.19 -4.98 -0.02 4.77 16 6 C -0.50 -14.20 8.23 -34.44 -0.28 -14.48 16 7 H 0.06 1.75 7.31 -52.48 -0.38 1.36 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 10 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.04 0.60 2.09 -68.86 -0.14 0.46 16 15 H 0.08 1.10 6.49 -51.93 -0.34 0.76 16 16 C -0.18 -2.73 8.30 37.16 0.31 -2.42 16 17 C 0.42 7.39 6.09 -33.05 -0.20 7.19 16 18 O -0.40 -8.87 12.58 5.44 0.07 -8.80 16 19 C -0.07 -1.03 6.75 -83.98 -0.57 -1.59 16 20 N -0.51 -5.35 5.86 -6.61 -0.04 -5.39 16 21 H 0.42 3.15 8.35 -40.82 -0.34 2.81 16 22 C 0.11 1.13 7.19 -81.53 -0.59 0.54 16 23 C -0.10 -0.60 10.23 36.01 0.37 -0.24 16 24 C -0.22 -2.86 6.00 -105.06 -0.63 -3.49 16 25 C 0.57 6.96 7.49 34.40 0.26 7.22 16 26 O -0.51 -7.49 17.90 -19.29 -0.35 -7.83 16 27 O -0.51 -4.64 13.44 -40.65 -0.55 -5.19 16 28 C -0.02 -0.35 6.25 -103.67 -0.65 -1.00 16 29 C -0.10 -1.47 9.60 36.01 0.35 -1.12 16 30 H 0.10 1.45 7.84 -52.49 -0.41 1.04 16 31 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.09 1.27 7.27 -52.49 -0.38 0.89 16 33 H 0.10 1.99 6.23 -51.93 -0.32 1.67 16 34 H 0.03 0.54 6.63 -51.93 -0.34 0.19 16 35 H 0.05 1.56 5.87 -51.93 -0.30 1.25 16 36 H -0.01 -0.24 6.86 -51.93 -0.36 -0.59 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.96 6.84 -51.93 -0.35 0.61 16 40 H 0.08 1.49 6.54 -51.93 -0.34 1.15 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.50 7.92 -51.93 -0.41 0.09 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.41 1.69 9.11 45.56 0.42 2.11 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.09 1.54 6.43 -51.93 -0.33 1.20 16 47 H 0.06 0.78 8.05 -51.93 -0.42 0.36 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -36.22 390.41 -7.93 -44.15 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.87 Total: 4.08 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -1.84 Total: -6.06 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: -0.26 Total: -43.26 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.82 Total: -21.82 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.22 -7.93 -44.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.231 kcal (2) G-P(sol) polarization free energy of solvation -36.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds