Wall clock time and date at job start Tue Mar 31 2020 20:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00424 * 2 1 4 4 N 1.46899 * 109.46973 * 124.61412 * 3 2 1 5 5 C 1.46902 * 110.99890 * 199.73986 * 4 3 2 6 6 C 1.50698 * 109.47312 * 66.04975 * 5 4 3 7 7 H 1.08007 * 119.99555 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00133 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00131 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99707 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47176 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46671 * 120.00167 * 10 8 6 13 13 H 1.48502 * 109.46937 * 239.99656 * 10 8 6 14 14 C 1.46905 * 111.00048 * 75.78843 * 4 3 2 15 15 H 1.08998 * 109.46629 * 317.12558 * 14 4 3 16 16 C 1.53001 * 109.47060 * 77.12161 * 14 4 3 17 17 C 1.50695 * 109.47409 * 197.12693 * 14 4 3 18 18 O 1.21419 * 119.99406 * 341.35393 * 17 14 4 19 19 C 1.41547 * 120.00060 * 161.35231 * 17 14 4 20 20 N 1.38007 * 125.97879 * 0.02562 * 19 17 14 21 21 H 0.96997 * 125.36909 * 0.02562 * 20 19 17 22 22 C 1.34106 * 109.26418 * 179.75210 * 20 19 17 23 23 C 1.50700 * 125.65486 * 180.21954 * 22 20 19 24 24 C 1.38415 * 108.68980 * 0.24448 * 22 20 19 25 25 C 1.47273 * 126.40967 * 179.97438 * 24 22 20 26 26 O 1.21530 * 120.00021 * 90.02747 * 25 24 22 27 27 O 1.34758 * 120.00394 * 270.02330 * 25 24 22 28 28 C 1.37823 * 125.97699 * 180.20086 * 19 17 14 29 29 C 1.50707 * 126.58991 * 359.97438 * 28 19 17 30 30 H 1.08000 * 119.99429 * 359.97438 * 1 2 3 31 31 H 1.07989 * 120.00346 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.99559 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47093 * 4.61375 * 3 2 1 34 34 H 1.09003 * 109.46886 * 244.61485 * 3 2 1 35 35 H 1.08999 * 109.47015 * 186.04932 * 5 4 3 36 36 H 1.09005 * 109.47192 * 306.04582 * 5 4 3 37 37 H 0.96995 * 119.99795 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.46816 * 179.97438 * 16 14 4 39 39 H 1.08999 * 109.47511 * 300.00348 * 16 14 4 40 40 H 1.09005 * 109.46928 * 60.00268 * 16 14 4 41 41 H 1.08999 * 109.47178 * 90.02930 * 23 22 20 42 42 H 1.09003 * 109.47621 * 210.02594 * 23 22 20 43 43 H 1.09000 * 109.47565 * 330.02796 * 23 22 20 44 44 H 0.96698 * 117.00717 * 180.02562 * 27 25 24 45 45 H 1.08998 * 109.46736 * 270.30546 * 29 28 19 46 46 H 1.09000 * 109.46960 * 30.30801 * 29 28 19 47 47 H 1.09000 * 109.47148 * 150.31084 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9898 1.3356 1.1398 5 6 3.3885 2.7134 1.4573 6 6 2.1895 3.4827 1.9489 7 1 1.2276 2.9966 2.0189 8 6 2.3208 4.8068 2.3103 9 7 3.4922 5.3985 2.2256 10 14 0.8343 5.7605 2.9190 11 1 -0.3564 4.8732 2.9205 12 1 1.0898 6.2477 4.2984 13 1 0.5883 6.9186 2.0226 14 6 4.1657 0.4927 0.8855 15 1 3.8485 -0.4454 0.4300 16 6 5.1208 1.2220 -0.0614 17 6 4.8696 0.2065 2.1868 18 8 4.6602 0.9061 3.1569 19 6 5.7748 -0.8779 2.2783 20 7 6.1037 -1.7477 1.2586 21 1 5.7495 -1.7146 0.3562 22 6 6.9947 -2.6424 1.7103 23 6 7.6065 -3.7577 0.9023 24 6 7.2587 -2.3720 3.0419 25 6 8.1798 -3.1147 3.9187 26 8 9.3463 -2.7824 3.9953 27 8 7.7293 -4.1627 4.6362 28 6 6.4795 -1.2518 3.4022 29 6 6.4320 -0.5880 4.7544 30 1 -0.5399 0.9354 0.0004 31 1 -0.5400 -0.9352 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.3583 2.1319 0.0827 34 1 2.6268 1.3993 -0.9285 35 1 4.1547 2.7004 2.2325 36 1 3.7854 3.1922 0.5622 37 1 3.5845 6.3299 2.4802 38 1 5.9935 0.5967 -0.2498 39 1 4.6117 1.4290 -1.0027 40 1 5.4380 2.1602 0.3940 41 1 8.5220 -3.4033 0.4287 42 1 7.8383 -4.5969 1.5583 43 1 6.9020 -4.0798 0.1355 44 1 8.3710 -4.6187 5.1977 45 1 7.1882 0.1957 4.8011 46 1 5.4457 -0.1509 4.9101 47 1 6.6279 -1.3286 5.5298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:00 Heat of formation + Delta-G solvation = -81.619801 kcal Electronic energy + Delta-G solvation = -29462.004532 eV Core-core repulsion = 25417.437409 eV Total energy + Delta-G solvation = -4044.567123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.92032 -40.96227 -40.32666 -38.35515 -37.00055 -34.94466 -34.61250 -34.04323 -33.11250 -31.44622 -29.25234 -28.86147 -28.14198 -26.50401 -25.84117 -24.72875 -22.89291 -21.61945 -20.97270 -20.36307 -19.98401 -18.94805 -18.71142 -18.38047 -17.14872 -16.88951 -16.76125 -16.46918 -16.35076 -16.04862 -15.52587 -15.39516 -15.14752 -14.97779 -14.51691 -14.42604 -14.23564 -14.11383 -14.06168 -13.82336 -13.51112 -13.27359 -13.21005 -13.19143 -13.11441 -12.97606 -12.72128 -12.66825 -12.57365 -12.48358 -12.18855 -11.96008 -11.88604 -11.65663 -11.26180 -10.64371 -10.38099 -10.17784 -10.04538 -9.25976 -8.91431 -8.17110 -6.24345 0.03138 1.03077 1.04986 1.36779 1.39253 1.47849 1.51815 1.83510 2.02232 2.34924 2.40686 3.04530 3.16036 3.48076 3.62328 3.84083 3.93690 3.97723 4.07220 4.14635 4.36016 4.40406 4.41253 4.49819 4.51377 4.60626 4.61727 4.65715 4.69778 4.77278 4.93219 4.98306 5.03634 5.05370 5.10161 5.15801 5.31920 5.36599 5.46090 5.53401 5.62796 5.67107 5.76911 6.03560 6.12950 6.31536 6.39516 6.60668 6.78686 6.92796 7.00387 7.43082 8.94240 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.003243 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.816091 B = 8632.123436 C = 9694.010680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.144 4.144 3 C 0.080 3.920 4 N -0.527 5.527 5 C 0.210 3.790 6 C -0.516 4.516 7 H 0.056 0.944 8 C 0.001 3.999 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.264 1.264 12 H -0.283 1.283 13 H -0.275 1.275 14 C 0.035 3.965 15 H 0.127 0.873 16 C -0.169 4.169 17 C 0.416 3.584 18 O -0.464 6.464 19 C -0.095 4.095 20 N -0.493 5.493 21 H 0.441 0.559 22 C 0.146 3.854 23 C -0.099 4.099 24 C -0.252 4.252 25 C 0.578 3.422 26 O -0.539 6.539 27 O -0.502 6.502 28 C -0.037 4.037 29 C -0.098 4.098 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.018 0.982 36 H -0.032 1.032 37 H 0.261 0.739 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.431 0.569 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.727 -24.078 -6.315 25.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.163 4.163 3 C -0.047 4.047 4 N -0.250 5.250 5 C 0.084 3.916 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.188 1.188 12 H -0.209 1.209 13 H -0.201 1.201 14 C -0.075 4.075 15 H 0.145 0.855 16 C -0.228 4.228 17 C 0.295 3.705 18 O -0.339 6.339 19 C -0.204 4.204 20 N -0.090 5.090 21 H 0.284 0.716 22 C 0.020 3.980 23 C -0.156 4.156 24 C -0.259 4.259 25 C 0.421 3.579 26 O -0.429 6.429 27 O -0.315 6.315 28 C -0.044 4.044 29 C -0.155 4.155 30 H 0.102 0.898 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.036 0.964 36 H -0.014 1.014 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.129 0.871 44 H 0.292 0.708 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.345 -23.358 -5.730 24.873 hybrid contribution 0.177 1.409 0.032 1.421 sum 6.522 -21.949 -5.698 23.596 Atomic orbital electron populations 1.23924 0.95833 1.02185 1.00728 1.22897 0.96202 0.97470 0.99691 1.21223 0.95395 0.96714 0.91339 1.62076 1.13236 1.12218 1.37483 1.19455 0.95631 0.83108 0.93417 1.21508 0.95933 0.95430 1.42604 0.92574 1.25835 0.98843 0.98832 0.96162 1.70097 1.24993 1.12358 1.50085 0.85440 0.79535 0.78425 0.77859 1.18831 1.20861 1.20090 1.22193 0.91910 0.99535 0.93832 0.85540 1.22247 1.00123 1.00838 0.99580 1.20400 0.78955 0.81158 0.89976 1.90638 1.58172 1.45494 1.39624 1.19372 1.09818 1.00910 0.90275 1.41504 1.32662 1.22148 1.12646 0.71602 1.21185 0.91306 0.93184 0.92287 1.20817 1.02074 0.92870 0.99856 1.18380 1.09671 1.02991 0.94820 1.19838 0.84766 0.76896 0.76351 1.90899 1.20113 1.67232 1.64640 1.84674 1.47907 1.42722 1.56219 1.20197 0.94234 0.94560 0.95379 1.20427 1.03250 0.99961 0.91827 0.89818 0.86199 0.85798 0.92034 0.93651 0.96378 1.01431 0.92987 0.89393 0.90460 0.94788 0.88186 0.88867 0.87083 0.70764 0.91384 0.91217 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.03 14.32 67.78 0.97 -4.06 16 2 C -0.14 -4.11 9.33 25.64 0.24 -3.87 16 3 C 0.08 2.95 5.16 85.56 0.44 3.39 16 4 N -0.53 -22.51 4.13 -884.46 -3.65 -26.16 16 5 C 0.21 11.46 3.19 85.56 0.27 11.73 16 6 C -0.52 -30.62 8.23 25.60 0.21 -30.41 16 7 H 0.06 3.30 7.31 -2.91 -0.02 3.28 16 8 C 0.00 0.04 5.46 84.65 0.46 0.50 16 9 N -0.93 -58.78 13.29 21.45 0.28 -58.49 16 10 Si 0.96 46.55 29.54 68.60 2.03 48.58 16 11 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 C 0.04 1.15 2.09 44.17 0.09 1.24 16 15 H 0.13 2.97 6.49 -2.39 -0.02 2.95 16 16 C -0.17 -5.12 8.30 71.98 0.60 -4.52 16 17 C 0.42 15.24 6.09 26.50 0.16 15.40 16 18 O -0.46 -22.09 12.58 -3.46 -0.04 -22.14 16 19 C -0.10 -2.74 6.75 38.89 0.26 -2.47 16 20 N -0.49 -8.78 5.86 -174.81 -1.03 -9.80 16 21 H 0.44 4.56 8.35 -92.71 -0.77 3.78 16 22 C 0.15 2.49 7.19 42.25 0.30 2.79 16 23 C -0.10 -0.73 10.23 71.24 0.73 0.00 16 24 C -0.25 -6.11 6.00 -20.15 -0.12 -6.23 16 25 C 0.58 13.18 7.49 70.20 0.53 13.71 16 26 O -0.54 -15.30 17.90 19.74 0.35 -14.95 16 27 O -0.50 -7.92 13.44 -56.69 -0.76 -8.68 16 28 C -0.04 -1.09 6.25 -19.25 -0.12 -1.21 16 29 C -0.10 -3.07 9.60 71.24 0.68 -2.38 16 30 H 0.08 2.44 7.84 -2.91 -0.02 2.41 16 31 H 0.12 2.47 8.06 -2.92 -0.02 2.44 16 32 H 0.12 2.80 7.27 -2.91 -0.02 2.78 16 33 H 0.06 2.65 6.23 -2.39 -0.01 2.64 16 34 H 0.05 1.51 6.63 -2.39 -0.02 1.49 16 35 H 0.02 1.13 5.87 -2.39 -0.01 1.11 16 36 H -0.03 -1.84 6.86 -2.38 -0.02 -1.85 16 37 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 2.15 6.84 -2.39 -0.02 2.14 16 40 H 0.03 1.34 6.54 -2.38 -0.02 1.32 16 41 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.09 0.64 7.92 -2.39 -0.02 0.62 16 43 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.43 2.46 9.11 -74.06 -0.67 1.78 16 45 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.07 2.52 6.43 -2.39 -0.02 2.50 16 47 H 0.08 2.07 8.05 -2.39 -0.02 2.05 16 Total: -1.00 -85.98 390.41 2.47 -83.51 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -0.43 Total: 14.53 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 5.71 Total: -6.39 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -4.39 Total: -94.46 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -0.45 Total: -45.77 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -85.98 2.47 -83.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.893 kcal (2) G-P(sol) polarization free energy of solvation -85.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds