Wall clock time and date at job start Tue Mar 31 2020 20:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34101 * 125.66105 * 2 1 4 4 H 0.97003 * 125.36736 * 0.03634 * 3 2 1 5 5 C 1.38016 * 109.26864 * 180.02562 * 3 2 1 6 6 C 1.41547 * 125.97779 * 179.97438 * 5 3 2 7 7 O 1.21416 * 119.99902 * 180.02562 * 6 5 3 8 8 C 1.50700 * 120.00369 * 0.02824 * 6 5 3 9 9 N 1.46898 * 109.47206 * 179.97438 * 8 6 5 10 10 C 1.46850 * 110.99813 * 66.05147 * 9 8 6 11 11 C 1.53033 * 109.52490 * 174.15761 * 10 9 8 12 12 C 1.53119 * 109.27787 * 59.17980 * 11 10 9 13 13 C 1.53126 * 109.16048 * 302.34386 * 12 11 10 14 14 H 1.09006 * 109.50177 * 297.71578 * 13 12 11 15 15 C 1.50701 * 109.50316 * 177.59710 * 13 12 11 16 16 H 1.07994 * 119.99591 * 239.99779 * 15 13 12 17 17 C 1.37878 * 119.99968 * 60.00021 * 15 13 12 18 18 N 1.31510 * 120.00050 * 359.97438 * 17 15 13 19 19 Si 1.86791 * 119.99825 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47387 * 89.99766 * 19 17 15 21 21 H 1.48496 * 109.47318 * 210.00142 * 19 17 15 22 22 H 1.48505 * 109.47239 * 330.00078 * 19 17 15 23 23 C 1.46845 * 111.00565 * 301.84081 * 9 8 6 24 24 C 1.37817 * 108.04255 * 0.24427 * 5 3 2 25 25 C 1.50696 * 126.59262 * 179.75133 * 24 5 3 26 26 C 1.38415 * 125.65305 * 180.02562 * 2 1 3 27 27 C 1.47278 * 126.40864 * 359.96528 * 26 2 1 28 28 O 1.21524 * 119.99962 * 89.97447 * 27 26 2 29 29 O 1.34759 * 119.99927 * 269.97704 * 27 26 2 30 30 H 1.09005 * 109.46686 * 89.96671 * 1 2 3 31 31 H 1.08996 * 109.47329 * 209.97231 * 1 2 3 32 32 H 1.09001 * 109.46434 * 329.97880 * 1 2 3 33 33 H 1.09002 * 109.46840 * 59.99908 * 8 6 5 34 34 H 1.09000 * 109.47169 * 300.00218 * 8 6 5 35 35 H 1.09005 * 109.46186 * 54.13967 * 10 9 8 36 36 H 1.08998 * 109.46012 * 294.17361 * 10 9 8 37 37 H 1.09004 * 109.50318 * 299.23790 * 11 10 9 38 38 H 1.09003 * 109.50170 * 179.11732 * 11 10 9 39 39 H 1.08999 * 109.52185 * 182.44278 * 12 11 10 40 40 H 1.08993 * 109.52436 * 62.24928 * 12 11 10 41 41 H 0.97004 * 120.00196 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.46315 * 65.81881 * 23 9 8 43 43 H 1.09005 * 109.45975 * 305.85394 * 23 9 8 44 44 H 1.09004 * 109.46477 * 90.00176 * 25 24 5 45 45 H 1.08993 * 109.47252 * 210.00083 * 25 24 5 46 46 H 1.08997 * 109.46932 * 330.00376 * 25 24 5 47 47 H 0.96693 * 117.00287 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2888 1.0895 0.0000 4 1 1.9735 2.0069 0.0005 5 6 3.6129 0.7000 -0.0006 6 6 4.7339 1.5643 -0.0013 7 8 5.8567 1.1022 -0.0022 8 6 4.5339 3.0579 -0.0008 9 7 5.8416 3.7271 -0.0011 10 6 6.5632 3.4717 -1.2543 11 6 7.8509 4.2981 -1.2806 12 6 8.7221 3.9148 -0.0812 13 6 7.9301 4.1447 1.2091 14 1 7.6845 5.2026 1.3017 15 6 8.7591 3.7143 2.3917 16 1 8.4005 2.9348 3.0475 17 6 9.9755 4.3158 2.6364 18 7 10.4124 5.2646 1.8375 19 14 11.0026 3.7828 4.1027 20 1 11.9103 2.6798 3.6966 21 1 11.8072 4.9328 4.5877 22 1 10.1070 3.3119 5.1896 23 6 6.6401 3.3227 1.1631 24 6 3.6526 -0.6775 -0.0065 25 6 4.8879 -1.5406 -0.0145 26 6 2.3138 -1.1247 -0.0005 27 6 1.8602 -2.5259 -0.0004 28 8 1.6721 -3.1037 -1.0528 29 8 1.6537 -3.1672 1.1667 30 1 -0.3633 0.0006 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3632 0.8898 0.5142 33 1 3.9771 3.3496 0.8897 34 1 3.9757 3.3501 -0.8902 35 1 5.9342 3.7524 -2.0992 36 1 6.8101 2.4122 -1.3218 37 1 7.6040 5.3585 -1.2271 38 1 8.3939 4.0964 -2.2040 39 1 9.6207 4.5317 -0.0717 40 1 9.0014 2.8639 -0.1548 41 1 11.2679 5.6881 2.0099 42 1 6.8866 2.2639 1.0844 43 1 6.0670 3.4952 2.0742 44 1 5.1892 -1.7530 1.0113 45 1 4.6742 -2.4760 -0.5315 46 1 5.6936 -1.0170 -0.5289 47 1 1.3567 -4.0860 1.1162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607486840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:48 Heat of formation + Delta-G solvation = -84.112370 kcal Electronic energy + Delta-G solvation = -29353.434223 eV Core-core repulsion = 25308.759014 eV Total energy + Delta-G solvation = -4044.675209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.09592 -40.13312 -39.53628 -37.15699 -36.25714 -33.78186 -33.22075 -32.45694 -31.61432 -29.79756 -28.66287 -28.17802 -26.09140 -24.87773 -24.26775 -22.32203 -21.44604 -21.04356 -20.14941 -19.44933 -18.75130 -18.17840 -17.50546 -16.41793 -16.32711 -15.79018 -15.70465 -15.25300 -14.94588 -14.68322 -14.43156 -14.13652 -13.99927 -13.61908 -13.52340 -13.30456 -13.27004 -13.08043 -12.64507 -12.51208 -12.32247 -12.14148 -12.07341 -11.93003 -11.72668 -11.69220 -11.34788 -11.03817 -10.87882 -10.60389 -10.55044 -10.16864 -9.96682 -9.72295 -9.38557 -9.22546 -8.98628 -8.63194 -8.43628 -8.23373 -7.45714 -5.90760 -3.96068 0.87506 1.78067 1.84440 2.53926 2.90993 3.08353 3.35598 3.41859 3.45232 4.14886 4.22462 4.39293 4.49833 4.58021 4.77376 4.93728 4.97652 5.18525 5.22514 5.27657 5.36420 5.39211 5.42141 5.53823 5.67940 5.73087 5.82228 5.96183 5.99357 6.16264 6.17832 6.23945 6.38182 6.48614 6.57272 6.61668 6.81590 6.88341 6.91610 7.08136 7.29262 7.41242 7.63450 7.63753 7.66635 7.80577 7.87802 8.16823 8.25706 8.56803 9.07789 9.67609 11.15309 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.002779 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.972416 B =10072.379302 C =10814.994663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.117 3.883 3 N -0.511 5.511 4 H 0.426 0.574 5 C -0.084 4.084 6 C 0.378 3.622 7 O -0.425 6.425 8 C 0.007 3.993 9 N -0.519 5.519 10 C 0.052 3.948 11 C -0.115 4.115 12 C -0.110 4.110 13 C 0.058 3.942 14 H 0.030 0.970 15 C -0.510 4.510 16 H 0.053 0.947 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.048 3.952 24 C -0.019 4.019 25 C -0.100 4.100 26 C -0.222 4.222 27 C 0.568 3.432 28 O -0.508 6.508 29 O -0.509 6.509 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.032 0.968 41 H 0.258 0.742 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.090 0.910 47 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.882 -10.455 -4.947 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.007 4.007 3 N -0.106 5.106 4 H 0.265 0.735 5 C -0.193 4.193 6 C 0.255 3.745 7 O -0.299 6.299 8 C -0.123 4.123 9 N -0.241 5.241 10 C -0.076 4.076 11 C -0.153 4.153 12 C -0.148 4.148 13 C 0.039 3.961 14 H 0.048 0.952 15 C -0.549 4.549 16 H 0.071 0.929 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.078 4.078 24 C -0.026 4.026 25 C -0.157 4.157 26 C -0.230 4.230 27 C 0.410 3.590 28 O -0.395 6.395 29 O -0.320 6.320 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -21.071 -9.599 -5.201 23.731 hybrid contribution 0.150 -1.312 0.715 1.501 sum -20.921 -10.910 -4.486 24.018 Atomic orbital electron populations 1.20590 0.86573 1.04490 1.04003 1.20565 0.93568 0.85191 1.01341 1.41546 1.05557 1.08637 1.54855 0.73461 1.20027 0.84639 0.94491 1.20157 1.21615 0.86990 0.92420 0.73486 1.90590 1.24531 1.79053 1.35730 1.22699 0.96577 0.89333 1.03643 1.62373 1.02306 1.54879 1.04573 1.22174 0.95690 0.99448 0.90287 1.21644 0.94923 0.99425 0.99283 1.21633 1.00154 0.99702 0.93274 1.18622 0.88968 0.95319 0.93171 0.95231 1.21148 1.03396 1.19950 1.10415 0.92921 1.24925 0.97622 0.94968 0.96374 1.69895 1.20361 1.25259 1.37368 0.86640 0.80384 0.78071 0.83158 1.20777 1.21322 1.20008 1.22626 0.95760 1.00329 0.89092 1.20108 0.93338 0.91858 0.97270 1.20513 0.94180 0.97825 1.03190 1.18195 0.93722 0.89110 1.21963 1.19986 0.72175 0.86083 0.80777 1.90910 1.47532 1.67929 1.33132 1.84724 1.79838 1.31984 1.35448 0.89491 0.89565 0.90133 0.88144 0.88631 0.93097 0.93542 0.92389 0.93591 0.89254 0.94927 0.93156 0.92460 0.93134 0.90289 0.91895 0.89089 0.73216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.49 10.23 36.01 0.37 -0.12 16 2 C 0.12 1.03 7.19 -81.53 -0.59 0.44 16 3 N -0.51 -4.31 5.87 -6.61 -0.04 -4.35 16 4 H 0.43 2.14 8.62 -40.82 -0.35 1.79 16 5 C -0.08 -1.03 6.76 -83.97 -0.57 -1.60 16 6 C 0.38 5.46 6.36 -33.05 -0.21 5.25 16 7 O -0.42 -7.68 9.88 5.44 0.05 -7.63 16 8 C 0.01 0.10 5.29 -4.98 -0.03 0.07 16 9 N -0.52 -9.45 4.86 -236.12 -1.15 -10.60 16 10 C 0.05 0.94 5.09 -3.83 -0.02 0.92 16 11 C -0.11 -2.33 6.09 -26.65 -0.16 -2.49 16 12 C -0.11 -2.70 5.02 -26.60 -0.13 -2.83 16 13 C 0.06 1.49 2.27 -91.69 -0.21 1.28 16 14 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 15 C -0.51 -14.39 8.56 -34.44 -0.29 -14.68 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.87 11.35 55.43 0.63 -25.24 16 19 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.05 1.05 4.20 -3.84 -0.02 1.04 16 24 C -0.02 -0.25 6.25 -103.68 -0.65 -0.90 16 25 C -0.10 -1.30 9.61 36.00 0.35 -0.96 16 26 C -0.22 -2.57 6.00 -105.05 -0.63 -3.20 16 27 C 0.57 6.34 7.49 34.41 0.26 6.59 16 28 O -0.51 -6.91 17.89 -19.28 -0.35 -7.26 16 29 O -0.51 -4.23 13.44 -40.65 -0.55 -4.77 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.42 7.92 -51.93 -0.41 0.01 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 0.99 8.06 -51.93 -0.42 0.57 16 35 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 36 H 0.05 0.90 6.00 -51.93 -0.31 0.59 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 40 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.06 1.33 5.36 -51.93 -0.28 1.05 16 43 H 0.05 1.09 8.12 -51.93 -0.42 0.67 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 46 H 0.09 1.31 6.41 -51.93 -0.33 0.98 16 47 H 0.41 1.40 9.11 45.56 0.42 1.81 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -35.41 378.94 -9.52 -44.93 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.19 Total: 2.00 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -2.63 Total: -9.54 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.56 Total: -40.18 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.84 Total: -19.66 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.41 -9.52 -44.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607486840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.181 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds