Wall clock time and date at job start Tue Mar 31 2020 20:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34101 * 125.66105 * 2 1 4 4 H 0.97003 * 125.36736 * 0.03634 * 3 2 1 5 5 C 1.38016 * 109.26864 * 180.02562 * 3 2 1 6 6 C 1.41547 * 125.97779 * 179.97438 * 5 3 2 7 7 O 1.21416 * 119.99902 * 180.02562 * 6 5 3 8 8 C 1.50700 * 120.00369 * 0.02824 * 6 5 3 9 9 N 1.46898 * 109.47206 * 179.97438 * 8 6 5 10 10 C 1.46850 * 110.99813 * 66.05147 * 9 8 6 11 11 C 1.53033 * 109.52490 * 174.15761 * 10 9 8 12 12 C 1.53119 * 109.27787 * 59.17980 * 11 10 9 13 13 C 1.53126 * 109.16048 * 302.34386 * 12 11 10 14 14 H 1.09006 * 109.50177 * 297.71578 * 13 12 11 15 15 C 1.50701 * 109.50316 * 177.59710 * 13 12 11 16 16 H 1.07994 * 119.99591 * 239.99779 * 15 13 12 17 17 C 1.37878 * 119.99968 * 60.00021 * 15 13 12 18 18 N 1.31510 * 120.00050 * 359.97438 * 17 15 13 19 19 Si 1.86791 * 119.99825 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47387 * 89.99766 * 19 17 15 21 21 H 1.48496 * 109.47318 * 210.00142 * 19 17 15 22 22 H 1.48505 * 109.47239 * 330.00078 * 19 17 15 23 23 C 1.46845 * 111.00565 * 301.84081 * 9 8 6 24 24 C 1.37817 * 108.04255 * 0.24427 * 5 3 2 25 25 C 1.50696 * 126.59262 * 179.75133 * 24 5 3 26 26 C 1.38415 * 125.65305 * 180.02562 * 2 1 3 27 27 C 1.47278 * 126.40864 * 359.96528 * 26 2 1 28 28 O 1.21524 * 119.99962 * 89.97447 * 27 26 2 29 29 O 1.34759 * 119.99927 * 269.97704 * 27 26 2 30 30 H 1.09005 * 109.46686 * 89.96671 * 1 2 3 31 31 H 1.08996 * 109.47329 * 209.97231 * 1 2 3 32 32 H 1.09001 * 109.46434 * 329.97880 * 1 2 3 33 33 H 1.09002 * 109.46840 * 59.99908 * 8 6 5 34 34 H 1.09000 * 109.47169 * 300.00218 * 8 6 5 35 35 H 1.09005 * 109.46186 * 54.13967 * 10 9 8 36 36 H 1.08998 * 109.46012 * 294.17361 * 10 9 8 37 37 H 1.09004 * 109.50318 * 299.23790 * 11 10 9 38 38 H 1.09003 * 109.50170 * 179.11732 * 11 10 9 39 39 H 1.08999 * 109.52185 * 182.44278 * 12 11 10 40 40 H 1.08993 * 109.52436 * 62.24928 * 12 11 10 41 41 H 0.97004 * 120.00196 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.46315 * 65.81881 * 23 9 8 43 43 H 1.09005 * 109.45975 * 305.85394 * 23 9 8 44 44 H 1.09004 * 109.46477 * 90.00176 * 25 24 5 45 45 H 1.08993 * 109.47252 * 210.00083 * 25 24 5 46 46 H 1.08997 * 109.46932 * 330.00376 * 25 24 5 47 47 H 0.96693 * 117.00287 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2888 1.0895 0.0000 4 1 1.9735 2.0069 0.0005 5 6 3.6129 0.7000 -0.0006 6 6 4.7339 1.5643 -0.0013 7 8 5.8567 1.1022 -0.0022 8 6 4.5339 3.0579 -0.0008 9 7 5.8416 3.7271 -0.0011 10 6 6.5632 3.4717 -1.2543 11 6 7.8509 4.2981 -1.2806 12 6 8.7221 3.9148 -0.0812 13 6 7.9301 4.1447 1.2091 14 1 7.6845 5.2026 1.3017 15 6 8.7591 3.7143 2.3917 16 1 8.4005 2.9348 3.0475 17 6 9.9755 4.3158 2.6364 18 7 10.4124 5.2646 1.8375 19 14 11.0026 3.7828 4.1027 20 1 11.9103 2.6798 3.6966 21 1 11.8072 4.9328 4.5877 22 1 10.1070 3.3119 5.1896 23 6 6.6401 3.3227 1.1631 24 6 3.6526 -0.6775 -0.0065 25 6 4.8879 -1.5406 -0.0145 26 6 2.3138 -1.1247 -0.0005 27 6 1.8602 -2.5259 -0.0004 28 8 1.6721 -3.1037 -1.0528 29 8 1.6537 -3.1672 1.1667 30 1 -0.3633 0.0006 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3632 0.8898 0.5142 33 1 3.9771 3.3496 0.8897 34 1 3.9757 3.3501 -0.8902 35 1 5.9342 3.7524 -2.0992 36 1 6.8101 2.4122 -1.3218 37 1 7.6040 5.3585 -1.2271 38 1 8.3939 4.0964 -2.2040 39 1 9.6207 4.5317 -0.0717 40 1 9.0014 2.8639 -0.1548 41 1 11.2679 5.6881 2.0099 42 1 6.8866 2.2639 1.0844 43 1 6.0670 3.4952 2.0742 44 1 5.1892 -1.7530 1.0113 45 1 4.6742 -2.4760 -0.5315 46 1 5.6936 -1.0170 -0.5289 47 1 1.3567 -4.0860 1.1162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607486840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:44 Heat of formation + Delta-G solvation = -109.362717 kcal Electronic energy + Delta-G solvation = -29354.529161 eV Core-core repulsion = 25308.759014 eV Total energy + Delta-G solvation = -4045.770146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 6.39 seconds Orbital eigenvalues (eV) -42.93403 -41.15116 -40.57500 -38.66610 -37.04022 -35.52143 -34.21795 -33.62486 -32.91976 -31.65776 -29.53753 -29.21975 -27.12808 -26.91239 -25.23630 -23.73039 -23.14477 -22.10144 -21.01326 -20.46729 -20.29957 -19.00126 -18.52195 -18.42457 -17.15469 -16.94510 -16.71174 -16.50911 -16.46672 -15.81145 -15.76553 -15.36030 -15.32000 -14.89215 -14.53142 -14.31818 -14.22237 -14.14408 -13.87871 -13.83164 -13.67983 -13.27780 -13.27173 -13.19848 -12.92410 -12.80739 -12.75475 -12.53914 -12.51757 -12.29228 -11.92443 -11.77776 -11.61752 -11.37396 -11.30018 -10.87445 -10.66006 -10.36924 -10.06437 -9.28247 -8.90799 -8.07652 -6.21182 -0.05694 0.98910 1.02218 1.39416 1.40358 1.50593 1.83616 1.93053 2.34091 2.42585 3.05326 3.18814 3.20430 3.60116 3.82802 3.93071 4.13817 4.20073 4.29638 4.37106 4.40485 4.44791 4.50622 4.54249 4.63205 4.64205 4.67758 4.76322 4.78920 4.89442 4.95795 5.01926 5.07024 5.10210 5.16742 5.25366 5.37673 5.41428 5.50149 5.52571 5.59095 5.64136 5.94778 6.11203 6.19902 6.23434 6.33003 6.46709 6.65826 6.90917 6.96575 7.45986 8.97046 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.002779 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.972416 B =10072.379302 C =10814.994663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.147 3.853 3 N -0.491 5.491 4 H 0.445 0.555 5 C -0.101 4.101 6 C 0.382 3.618 7 O -0.473 6.473 8 C 0.007 3.993 9 N -0.525 5.525 10 C 0.057 3.943 11 C -0.109 4.109 12 C -0.102 4.102 13 C 0.056 3.944 14 H -0.003 1.003 15 C -0.535 4.535 16 H 0.046 0.954 17 C 0.014 3.986 18 N -0.915 5.915 19 Si 0.953 3.047 20 H -0.278 1.278 21 H -0.280 1.280 22 H -0.268 1.268 23 C 0.066 3.934 24 C -0.038 4.038 25 C -0.096 4.096 26 C -0.256 4.256 27 C 0.576 3.424 28 O -0.539 6.539 29 O -0.504 6.504 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.033 0.967 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.012 0.988 41 H 0.260 0.740 42 H 0.042 0.958 43 H 0.049 0.951 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.081 -10.424 -4.984 27.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.020 3.980 3 N -0.088 5.088 4 H 0.288 0.712 5 C -0.210 4.210 6 C 0.262 3.738 7 O -0.351 6.351 8 C -0.122 4.122 9 N -0.247 5.247 10 C -0.070 4.070 11 C -0.147 4.147 12 C -0.140 4.140 13 C 0.037 3.963 14 H 0.015 0.985 15 C -0.573 4.573 16 H 0.064 0.936 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.778 3.222 20 H -0.204 1.204 21 H -0.205 1.205 22 H -0.193 1.193 23 C -0.061 4.061 24 C -0.045 4.045 25 C -0.153 4.153 26 C -0.263 4.263 27 C 0.420 3.580 28 O -0.429 6.429 29 O -0.317 6.317 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.143 0.857 34 H 0.155 0.845 35 H 0.107 0.893 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -24.311 -9.554 -5.223 26.638 hybrid contribution 1.034 -1.377 0.743 1.875 sum -23.277 -10.931 -4.481 26.103 Atomic orbital electron populations 1.20811 0.83342 1.06192 1.05385 1.21155 0.95154 0.84144 0.97517 1.41473 1.04002 1.09712 1.53607 0.71194 1.19608 0.85575 0.93870 1.21955 1.21773 0.86843 0.93118 0.72044 1.90593 1.26337 1.79685 1.38517 1.22942 0.94185 0.88257 1.06825 1.62249 1.03543 1.55856 1.03094 1.22123 0.95253 0.98104 0.91551 1.21560 0.95696 0.99596 0.97850 1.21430 0.99744 0.97645 0.95221 1.18545 0.90971 0.93832 0.92934 0.98472 1.21508 1.04359 1.20011 1.11468 0.93616 1.25708 0.98720 0.94994 0.99075 1.70031 1.20686 1.26015 1.38731 0.85641 0.78755 0.77829 0.79946 1.20417 1.20499 1.19290 1.22199 0.94555 0.98468 0.90918 1.20252 0.93884 0.92578 0.97806 1.20409 0.94181 0.98007 1.02737 1.18423 0.93578 0.90338 1.23913 1.19916 0.71361 0.85987 0.80777 1.90896 1.49177 1.68597 1.34260 1.84678 1.79330 1.33644 1.34071 0.88068 0.89196 0.87135 0.85704 0.84519 0.89253 0.94908 0.92649 0.91722 0.92466 0.96873 0.93060 0.93985 0.93262 0.90640 0.91418 0.91044 0.70779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.23 71.24 0.73 0.17 16 2 C 0.15 2.08 7.19 42.26 0.30 2.39 16 3 N -0.49 -6.60 5.87 -174.81 -1.03 -7.62 16 4 H 0.44 2.39 8.62 -92.71 -0.80 1.59 16 5 C -0.10 -2.32 6.76 38.89 0.26 -2.06 16 6 C 0.38 10.63 6.36 26.50 0.17 10.80 16 7 O -0.47 -17.54 9.88 -3.45 -0.03 -17.58 16 8 C 0.01 0.16 5.29 85.56 0.45 0.61 16 9 N -0.53 -18.47 4.86 -900.94 -4.38 -22.85 16 10 C 0.06 2.01 5.09 86.32 0.44 2.45 16 11 C -0.11 -4.43 6.09 30.65 0.19 -4.25 16 12 C -0.10 -5.25 5.02 30.68 0.15 -5.09 16 13 C 0.06 3.00 2.27 -11.49 -0.03 2.97 16 14 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 15 C -0.53 -31.29 8.56 25.60 0.22 -31.07 16 16 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 17 C 0.01 0.79 5.30 84.66 0.45 1.24 16 18 N -0.92 -54.91 11.35 21.45 0.24 -54.66 16 19 Si 0.95 45.50 29.54 68.60 2.03 47.53 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 23 C 0.07 2.93 4.20 86.33 0.36 3.29 16 24 C -0.04 -0.98 6.25 -19.25 -0.12 -1.10 16 25 C -0.10 -2.62 9.61 71.23 0.68 -1.93 16 26 C -0.26 -5.51 6.00 -20.14 -0.12 -5.63 16 27 C 0.58 12.11 7.49 70.20 0.53 12.64 16 28 O -0.54 -14.23 17.89 19.76 0.35 -13.88 16 29 O -0.50 -7.50 13.44 -56.70 -0.76 -8.26 16 30 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.09 0.52 7.92 -2.39 -0.02 0.50 16 32 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.14 2.16 8.06 -2.39 -0.02 2.14 16 35 H 0.09 2.49 8.06 -2.38 -0.02 2.47 16 36 H 0.03 1.27 6.00 -2.39 -0.01 1.26 16 37 H 0.05 2.26 8.14 -2.39 -0.02 2.25 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.06 3.27 6.15 -2.39 -0.01 3.26 16 40 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 42 H 0.04 2.03 5.36 -2.39 -0.01 2.02 16 43 H 0.05 2.15 8.12 -2.38 -0.02 2.13 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.07 1.68 8.05 -2.39 -0.02 1.66 16 46 H 0.07 2.21 6.41 -2.39 -0.02 2.19 16 47 H 0.43 2.14 9.11 -74.06 -0.67 1.46 16 Total: -1.00 -81.72 378.94 0.64 -81.08 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -0.45 Total: 10.82 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 4.67 Total: -14.57 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -5.16 Total: -85.14 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.44 Total: -39.72 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -81.72 0.64 -81.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607486840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.280 kcal (2) G-P(sol) polarization free energy of solvation -81.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.39 seconds