Wall clock time and date at job start Tue Mar 31 2020 20:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.44835 * 2 1 4 4 O 1.42899 * 109.47122 * 60.03726 * 3 2 1 5 5 C 1.53043 * 109.45702 * 240.03560 * 2 1 3 6 6 C 1.53182 * 109.31636 * 301.34330 * 5 2 1 7 7 N 1.46934 * 108.77594 * 305.36544 * 6 5 2 8 8 C 1.34768 * 120.63094 * 233.58280 * 7 6 5 9 9 O 1.21595 * 120.00380 * 5.29902 * 8 7 6 10 10 N 1.34782 * 120.00200 * 185.29196 * 8 7 6 11 11 C 1.40020 * 120.00124 * 175.48682 * 10 8 7 12 12 C 1.38918 * 120.00152 * 215.36911 * 11 10 8 13 13 C 1.38006 * 119.99792 * 180.27247 * 12 11 10 14 14 C 1.38907 * 119.99912 * 359.48194 * 13 12 11 15 15 O 1.35787 * 119.99478 * 180.29127 * 14 13 12 16 16 C 1.34815 * 116.99894 * 354.69373 * 15 14 13 17 17 H 1.07994 * 120.00604 * 5.02888 * 16 15 14 18 18 C 1.38638 * 119.99570 * 185.03074 * 16 15 14 19 19 N 1.31567 * 119.99734 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00035 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47421 * 89.99650 * 20 18 16 22 22 H 1.48499 * 109.46927 * 210.00200 * 20 18 16 23 23 H 1.48501 * 109.46922 * 329.99657 * 20 18 16 24 24 C 1.38896 * 120.00522 * 0.27091 * 14 13 12 25 25 C 1.38015 * 119.99962 * 359.97438 * 24 14 13 26 26 C 1.46926 * 118.73717 * 53.85886 * 7 6 5 27 27 C 1.53039 * 109.46521 * 119.97029 * 2 1 3 28 28 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47058 * 299.95952 * 1 2 3 30 30 H 1.08994 * 109.47258 * 59.96593 * 1 2 3 31 31 H 1.09002 * 109.47351 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47418 * 300.03508 * 3 2 1 33 33 H 0.96700 * 113.99939 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.49620 * 181.39075 * 5 2 1 35 35 H 1.09002 * 109.49743 * 61.29628 * 5 2 1 36 36 H 1.08997 * 109.59130 * 185.58056 * 6 5 2 37 37 H 1.09002 * 109.58832 * 65.15019 * 6 5 2 38 38 H 0.97001 * 119.99739 * 355.49405 * 10 8 7 39 39 H 1.07995 * 120.00086 * 0.05497 * 12 11 10 40 40 H 1.08002 * 120.00015 * 179.75238 * 13 12 11 41 41 H 0.97002 * 120.00189 * 180.02562 * 19 18 16 42 42 H 1.08004 * 120.00065 * 180.02562 * 24 14 13 43 43 H 1.07995 * 119.99833 * 180.02562 * 25 24 14 44 44 H 1.09005 * 109.58751 * 65.92801 * 26 7 6 45 45 H 1.08997 * 109.58708 * 186.35683 * 26 7 6 46 46 H 1.08996 * 109.50023 * 178.60814 * 27 2 1 47 47 H 1.09003 * 109.49282 * 298.70226 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0394 1.4427 0.0000 4 8 1.5635 2.1159 1.1672 5 6 2.0398 -0.7207 -1.2502 6 6 1.4995 -2.1541 -1.2644 7 7 1.8626 -2.8089 -0.0001 8 6 2.5156 -3.9878 -0.0002 9 8 2.8951 -4.4726 -1.0488 10 7 2.7483 -4.6295 1.1620 11 6 3.3419 -5.8976 1.1550 12 6 2.9619 -6.8476 2.0945 13 6 3.5510 -8.0956 2.0911 14 6 4.5163 -8.4053 1.1414 15 8 5.0917 -9.6352 1.1344 16 6 4.7632 -10.4703 2.1405 17 1 4.0104 -10.1808 2.8587 18 6 5.3918 -11.7008 2.2531 19 7 5.0717 -12.5156 3.2352 20 14 6.6945 -12.2013 1.0113 21 1 8.0287 -11.7550 1.4862 22 1 6.6917 -13.6785 0.8592 23 1 6.3983 -11.5684 -0.2990 24 6 4.8926 -7.4572 0.1987 25 6 4.3071 -6.2074 0.2052 26 6 1.4947 -2.1570 1.2642 27 6 2.0400 -0.7208 1.2500 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5132 0.8904 30 1 -0.3633 0.5143 -0.8896 31 1 3.1294 1.4432 -0.0005 32 1 1.6754 1.9566 -0.8897 33 1 1.8488 3.0374 1.2335 34 1 3.1295 -0.7428 -1.2384 35 1 1.6956 -0.1934 -2.1399 36 1 1.9381 -2.7017 -2.0985 37 1 0.4146 -2.1347 -1.3674 38 1 2.5043 -4.2128 2.0033 39 1 2.2079 -6.6085 2.8298 40 1 3.2585 -8.8329 2.8240 41 1 5.5117 -13.3765 3.3143 42 1 5.6428 -7.6982 -0.5399 43 1 4.5994 -5.4704 -0.5280 44 1 0.4093 -2.1378 1.3631 45 1 1.9301 -2.7064 2.0988 46 1 3.1296 -0.7428 1.2382 47 1 1.6959 -0.1935 2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645680878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:18 Heat of formation + Delta-G solvation = -67.701421 kcal Electronic energy + Delta-G solvation = -28580.192526 eV Core-core repulsion = 24536.228949 eV Total energy + Delta-G solvation = -4043.963577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.95123 -39.50316 -38.68335 -36.99677 -36.32554 -34.36580 -33.60581 -32.28329 -31.37867 -30.24307 -28.65281 -27.65575 -27.08410 -25.18406 -23.79658 -23.45374 -22.27075 -21.40467 -20.13869 -19.07345 -18.13125 -17.83195 -17.67485 -17.31501 -16.59357 -15.76867 -15.69113 -15.22957 -15.10147 -14.83572 -14.70042 -14.22060 -13.94474 -13.81304 -13.69874 -13.56222 -13.46872 -12.95255 -12.75631 -12.60863 -12.32916 -12.25506 -12.20670 -11.95340 -11.73474 -11.63052 -11.52098 -11.10346 -10.93738 -10.91610 -10.74950 -10.72198 -10.38972 -10.16875 -9.91004 -9.57443 -9.28447 -8.82280 -8.68445 -8.23615 -6.98704 -6.38127 -4.03701 2.10609 2.18957 2.58601 3.22856 3.27498 3.29904 3.44955 3.70936 3.83628 4.20754 4.27686 4.31154 4.50641 4.55439 4.73840 4.76014 4.92826 4.94497 4.98870 5.01746 5.11773 5.13899 5.18054 5.29234 5.39306 5.52606 5.55698 5.57683 5.60532 5.67364 5.73790 5.77546 5.85893 6.05469 6.10142 6.15230 6.21406 6.37003 6.69556 6.75938 6.83821 7.16019 7.16109 7.17600 7.28079 7.64796 7.82429 7.95813 8.06990 8.64191 8.97560 9.60969 10.69562 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.035058 B = 0.002032 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.485405 B =13772.941689 C =14085.527355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C 0.086 3.914 4 O -0.570 6.570 5 C -0.125 4.125 6 C 0.131 3.869 7 N -0.630 5.630 8 C 0.705 3.295 9 O -0.576 6.576 10 N -0.676 5.676 11 C 0.063 3.937 12 C -0.094 4.094 13 C -0.206 4.206 14 C 0.151 3.849 15 O -0.218 6.218 16 C -0.388 4.388 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.881 5.881 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.177 4.177 25 C -0.070 4.070 26 C 0.109 3.891 27 C -0.119 4.119 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.378 0.622 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.397 0.603 39 H 0.112 0.888 40 H 0.137 0.863 41 H 0.279 0.721 42 H 0.120 0.880 43 H 0.132 0.868 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.406 29.453 -4.614 30.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 C 0.008 3.992 4 O -0.375 6.375 5 C -0.164 4.164 6 C 0.008 3.992 7 N -0.368 5.368 8 C 0.407 3.593 9 O -0.453 6.453 10 N -0.325 5.325 11 C -0.030 4.030 12 C -0.115 4.115 13 C -0.225 4.225 14 C 0.098 3.902 15 O -0.123 6.123 16 C -0.464 4.464 17 H 0.123 0.877 18 C -0.141 4.141 19 N -0.519 5.519 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.197 4.197 25 C -0.090 4.090 26 C -0.015 4.015 27 C -0.157 4.157 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.225 0.775 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.234 0.766 39 H 0.130 0.870 40 H 0.155 0.845 41 H 0.089 0.911 42 H 0.138 0.862 43 H 0.150 0.850 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.228 28.183 -5.338 29.841 hybrid contribution 0.552 0.496 0.101 0.749 sum -7.676 28.679 -5.237 30.147 Atomic orbital electron populations 1.21903 0.93764 1.01993 1.02276 1.20541 0.96677 0.92988 0.95674 1.22214 0.97150 0.92499 0.87327 1.86461 1.77557 1.28980 1.44507 1.21963 1.01522 0.95721 0.97146 1.21434 0.99557 0.91848 0.86358 1.47257 1.61173 1.21233 1.07178 1.15844 0.78797 0.80390 0.84278 1.90908 1.56495 1.67140 1.30718 1.42529 1.64545 1.18108 1.07363 1.17123 0.99254 0.84601 1.02041 1.20507 0.99525 0.92376 0.99089 1.21070 1.01152 0.97365 1.02938 1.19151 0.92042 0.85340 0.93628 1.83588 1.61981 1.19972 1.46777 1.20753 1.23355 0.97028 1.05224 0.87658 1.24461 0.97897 0.94724 0.96997 1.69652 1.42311 1.09807 1.30175 0.86180 0.81155 0.77403 0.82185 1.19920 1.20858 1.18310 1.20152 1.04968 0.92753 1.01857 1.20779 0.93896 0.96383 0.97948 1.21789 1.00383 0.93436 0.85852 1.21967 1.00905 0.94531 0.98304 0.92145 0.91733 0.92838 0.93706 0.93635 0.77545 0.91163 0.90540 0.88519 0.91471 0.76583 0.87007 0.84522 0.91122 0.86194 0.85024 0.90917 0.90487 0.91551 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 7.57 37.16 0.28 -0.61 16 2 C -0.06 -0.38 0.60 -154.47 -0.09 -0.47 16 3 C 0.09 0.48 5.91 37.16 0.22 0.70 16 4 O -0.57 -3.35 12.29 -35.23 -0.43 -3.78 16 5 C -0.13 -0.86 4.90 -26.61 -0.13 -0.99 16 6 C 0.13 1.20 5.97 -3.71 -0.02 1.17 16 7 N -0.63 -6.71 2.97 -178.23 -0.53 -7.24 16 8 C 0.70 10.42 8.14 -86.92 -0.71 9.71 16 9 O -0.58 -10.70 13.19 5.28 0.07 -10.63 16 10 N -0.68 -9.59 5.25 -14.18 -0.07 -9.66 16 11 C 0.06 1.12 6.30 -83.62 -0.53 0.59 16 12 C -0.09 -1.71 9.96 -39.41 -0.39 -2.10 16 13 C -0.21 -4.44 9.16 -39.42 -0.36 -4.80 16 14 C 0.15 3.56 6.65 -39.09 -0.26 3.30 16 15 O -0.22 -5.85 8.58 -0.02 0.00 -5.85 16 16 C -0.39 -11.00 9.94 30.88 0.31 -10.70 16 17 H 0.11 3.02 5.43 -52.49 -0.28 2.74 16 18 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 19 N -0.88 -25.59 13.96 55.48 0.77 -24.82 16 20 Si 0.91 21.99 28.62 -169.99 -4.86 17.13 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.18 -3.76 9.98 -39.42 -0.39 -4.15 16 25 C -0.07 -1.36 8.69 -39.41 -0.34 -1.70 16 26 C 0.11 0.84 5.95 -3.48 -0.02 0.82 16 27 C -0.12 -0.84 4.79 -26.39 -0.13 -0.97 16 28 H 0.06 0.39 4.97 -51.93 -0.26 0.13 16 29 H 0.06 0.45 7.68 -51.93 -0.40 0.05 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.38 0.72 9.12 45.56 0.42 1.13 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 1.07 6.99 -51.93 -0.36 0.71 16 37 H 0.07 0.53 6.69 -51.93 -0.35 0.19 16 38 H 0.40 4.31 6.31 -40.82 -0.26 4.05 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.14 3.06 5.63 -52.49 -0.30 2.76 16 41 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 43 H 0.13 2.54 6.22 -52.49 -0.33 2.22 16 44 H 0.07 0.50 6.69 -51.93 -0.35 0.16 16 45 H 0.08 0.54 5.65 -51.93 -0.29 0.25 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.59 7.64 -51.93 -0.40 0.20 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -33.63 368.49 -7.84 -41.47 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.67 Total: 6.37 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.67 Total: -8.54 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.17 Total: -41.72 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.36 Total: -20.26 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.86 Total: 17.13 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.63 -7.84 -41.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645680878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.228 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds