Wall clock time and date at job start Tue Mar 31 2020 20:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.44835 * 2 1 4 4 O 1.42899 * 109.47122 * 60.03726 * 3 2 1 5 5 C 1.53043 * 109.45702 * 240.03560 * 2 1 3 6 6 C 1.53182 * 109.31636 * 301.34330 * 5 2 1 7 7 N 1.46934 * 108.77594 * 305.36544 * 6 5 2 8 8 C 1.34768 * 120.63094 * 233.58280 * 7 6 5 9 9 O 1.21595 * 120.00380 * 5.29902 * 8 7 6 10 10 N 1.34782 * 120.00200 * 185.29196 * 8 7 6 11 11 C 1.40020 * 120.00124 * 175.48682 * 10 8 7 12 12 C 1.38918 * 120.00152 * 215.36911 * 11 10 8 13 13 C 1.38006 * 119.99792 * 180.27247 * 12 11 10 14 14 C 1.38907 * 119.99912 * 359.48194 * 13 12 11 15 15 O 1.35787 * 119.99478 * 180.29127 * 14 13 12 16 16 C 1.34815 * 116.99894 * 354.69373 * 15 14 13 17 17 H 1.07994 * 120.00604 * 5.02888 * 16 15 14 18 18 C 1.38638 * 119.99570 * 185.03074 * 16 15 14 19 19 N 1.31567 * 119.99734 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00035 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47421 * 89.99650 * 20 18 16 22 22 H 1.48499 * 109.46927 * 210.00200 * 20 18 16 23 23 H 1.48501 * 109.46922 * 329.99657 * 20 18 16 24 24 C 1.38896 * 120.00522 * 0.27091 * 14 13 12 25 25 C 1.38015 * 119.99962 * 359.97438 * 24 14 13 26 26 C 1.46926 * 118.73717 * 53.85886 * 7 6 5 27 27 C 1.53039 * 109.46521 * 119.97029 * 2 1 3 28 28 H 1.09001 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47058 * 299.95952 * 1 2 3 30 30 H 1.08994 * 109.47258 * 59.96593 * 1 2 3 31 31 H 1.09002 * 109.47351 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47418 * 300.03508 * 3 2 1 33 33 H 0.96700 * 113.99939 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.49620 * 181.39075 * 5 2 1 35 35 H 1.09002 * 109.49743 * 61.29628 * 5 2 1 36 36 H 1.08997 * 109.59130 * 185.58056 * 6 5 2 37 37 H 1.09002 * 109.58832 * 65.15019 * 6 5 2 38 38 H 0.97001 * 119.99739 * 355.49405 * 10 8 7 39 39 H 1.07995 * 120.00086 * 0.05497 * 12 11 10 40 40 H 1.08002 * 120.00015 * 179.75238 * 13 12 11 41 41 H 0.97002 * 120.00189 * 180.02562 * 19 18 16 42 42 H 1.08004 * 120.00065 * 180.02562 * 24 14 13 43 43 H 1.07995 * 119.99833 * 180.02562 * 25 24 14 44 44 H 1.09005 * 109.58751 * 65.92801 * 26 7 6 45 45 H 1.08997 * 109.58708 * 186.35683 * 26 7 6 46 46 H 1.08996 * 109.50023 * 178.60814 * 27 2 1 47 47 H 1.09003 * 109.49282 * 298.70226 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0394 1.4427 0.0000 4 8 1.5635 2.1159 1.1672 5 6 2.0398 -0.7207 -1.2502 6 6 1.4995 -2.1541 -1.2644 7 7 1.8626 -2.8089 -0.0001 8 6 2.5156 -3.9878 -0.0002 9 8 2.8951 -4.4726 -1.0488 10 7 2.7483 -4.6295 1.1620 11 6 3.3419 -5.8976 1.1550 12 6 2.9619 -6.8476 2.0945 13 6 3.5510 -8.0956 2.0911 14 6 4.5163 -8.4053 1.1414 15 8 5.0917 -9.6352 1.1344 16 6 4.7632 -10.4703 2.1405 17 1 4.0104 -10.1808 2.8587 18 6 5.3918 -11.7008 2.2531 19 7 5.0717 -12.5156 3.2352 20 14 6.6945 -12.2013 1.0113 21 1 8.0287 -11.7550 1.4862 22 1 6.6917 -13.6785 0.8592 23 1 6.3983 -11.5684 -0.2990 24 6 4.8926 -7.4572 0.1987 25 6 4.3071 -6.2074 0.2052 26 6 1.4947 -2.1570 1.2642 27 6 2.0400 -0.7208 1.2500 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5132 0.8904 30 1 -0.3633 0.5143 -0.8896 31 1 3.1294 1.4432 -0.0005 32 1 1.6754 1.9566 -0.8897 33 1 1.8488 3.0374 1.2335 34 1 3.1295 -0.7428 -1.2384 35 1 1.6956 -0.1934 -2.1399 36 1 1.9381 -2.7017 -2.0985 37 1 0.4146 -2.1347 -1.3674 38 1 2.5043 -4.2128 2.0033 39 1 2.2079 -6.6085 2.8298 40 1 3.2585 -8.8329 2.8240 41 1 5.5117 -13.3765 3.3143 42 1 5.6428 -7.6982 -0.5399 43 1 4.5994 -5.4704 -0.5280 44 1 0.4093 -2.1378 1.3631 45 1 1.9301 -2.7064 2.0988 46 1 3.1296 -0.7428 1.2382 47 1 1.6959 -0.1935 2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645680878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:17 Heat of formation + Delta-G solvation = -91.090041 kcal Electronic energy + Delta-G solvation = -28581.206732 eV Core-core repulsion = 24536.228949 eV Total energy + Delta-G solvation = -4044.977784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.99124 -40.84541 -39.90348 -38.31643 -37.18526 -35.61568 -34.61636 -34.25063 -32.10638 -31.86324 -29.90620 -28.56540 -27.73020 -27.06306 -24.45574 -24.36668 -23.88611 -22.76053 -21.31803 -20.17697 -19.60550 -19.17526 -18.78349 -18.16963 -17.96748 -16.79164 -16.58975 -16.49490 -15.96088 -15.80749 -15.68147 -15.61692 -15.51667 -15.36361 -14.80151 -14.63899 -14.46475 -14.16158 -14.07695 -14.01719 -13.56615 -13.39138 -13.24844 -13.11526 -12.84159 -12.75578 -12.53673 -12.52083 -12.15987 -11.99712 -11.65085 -11.51013 -11.40842 -11.34124 -11.21978 -10.96524 -10.78147 -10.66111 -9.85922 -9.65679 -8.62422 -8.47629 -6.18429 0.49789 0.54433 1.32868 1.36116 1.53071 1.54005 2.04862 2.30097 2.78564 2.81790 3.06814 3.16875 3.32443 3.67863 3.74067 3.99559 4.03475 4.12662 4.15897 4.19218 4.32508 4.44065 4.48157 4.51916 4.54580 4.62708 4.67509 4.72423 4.77761 4.84474 4.88662 5.01171 5.04320 5.09027 5.15499 5.18038 5.19676 5.29647 5.38155 5.50794 5.54393 5.55742 5.60764 5.78150 5.88562 5.94802 6.22344 6.85628 6.87060 6.95556 7.47557 7.61848 8.63547 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.035058 B = 0.002032 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.485405 B =13772.941689 C =14085.527355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 C 0.088 3.912 4 O -0.586 6.586 5 C -0.117 4.117 6 C 0.126 3.874 7 N -0.619 5.619 8 C 0.700 3.300 9 O -0.617 6.617 10 N -0.667 5.667 11 C 0.090 3.910 12 C -0.086 4.086 13 C -0.212 4.212 14 C 0.112 3.888 15 O -0.245 6.245 16 C -0.397 4.397 17 H 0.087 0.913 18 C 0.010 3.990 19 N -0.921 5.921 20 Si 0.967 3.033 21 H -0.266 1.266 22 H -0.268 1.268 23 H -0.266 1.266 24 C -0.176 4.176 25 C -0.075 4.075 26 C 0.104 3.896 27 C -0.113 4.113 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.394 0.606 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.417 0.583 39 H 0.152 0.848 40 H 0.123 0.877 41 H 0.284 0.716 42 H 0.127 0.873 43 H 0.137 0.863 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.056 0.944 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.358 32.588 -5.001 34.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.059 4.059 3 C 0.010 3.990 4 O -0.393 6.393 5 C -0.155 4.155 6 C 0.004 3.996 7 N -0.356 5.356 8 C 0.402 3.598 9 O -0.497 6.497 10 N -0.318 5.318 11 C -0.005 4.005 12 C -0.106 4.106 13 C -0.232 4.232 14 C 0.063 3.937 15 O -0.153 6.153 16 C -0.473 4.473 17 H 0.104 0.896 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.790 3.210 21 H -0.191 1.191 22 H -0.192 1.192 23 H -0.191 1.191 24 C -0.195 4.195 25 C -0.096 4.096 26 C -0.018 4.018 27 C -0.152 4.152 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.244 0.756 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.257 0.743 39 H 0.170 0.830 40 H 0.140 0.860 41 H 0.094 0.906 42 H 0.145 0.855 43 H 0.154 0.846 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.222 31.432 -5.697 33.249 hybrid contribution 0.662 -0.064 0.196 0.693 sum -8.560 31.368 -5.501 32.977 Atomic orbital electron populations 1.21847 0.93344 1.01847 1.02377 1.20544 0.96909 0.93604 0.94880 1.22166 0.97130 0.91950 0.87775 1.86409 1.77838 1.30475 1.44625 1.21888 1.00776 0.94395 0.98433 1.21594 1.00470 0.92642 0.84924 1.47327 1.59543 1.19777 1.08968 1.16027 0.78928 0.81309 0.83555 1.90888 1.58196 1.68503 1.32114 1.42376 1.64102 1.16797 1.08522 1.17212 0.97328 0.85795 1.00132 1.20761 0.99483 0.90698 0.99704 1.21123 1.01122 0.98637 1.02272 1.19579 0.93483 0.85159 0.95468 1.83534 1.63662 1.21249 1.46835 1.20737 1.23207 0.97810 1.05553 0.89574 1.25226 0.99992 0.94722 0.98865 1.69725 1.44030 1.10538 1.31940 0.85267 0.78767 0.77658 0.79349 1.19061 1.19234 1.19075 1.20318 1.05040 0.92869 1.01300 1.20913 0.94296 0.95747 0.98611 1.22044 1.01514 0.93710 0.84558 1.21910 1.00275 0.94035 0.98935 0.92339 0.92287 0.92126 0.93710 0.92498 0.75622 0.92217 0.88620 0.90728 0.89820 0.74264 0.83030 0.85964 0.90635 0.85508 0.84555 0.89317 0.89523 0.92471 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.57 71.98 0.54 -0.75 16 2 C -0.06 -0.60 0.60 -52.16 -0.03 -0.63 16 3 C 0.09 0.73 5.91 71.98 0.43 1.16 16 4 O -0.59 -5.32 12.29 -148.98 -1.83 -7.15 16 5 C -0.12 -1.33 4.90 30.67 0.15 -1.18 16 6 C 0.13 2.05 5.97 86.36 0.52 2.56 16 7 N -0.62 -11.70 2.97 -836.05 -2.48 -14.18 16 8 C 0.70 19.26 8.14 179.06 1.46 20.72 16 9 O -0.62 -22.28 13.19 -4.01 -0.05 -22.34 16 10 N -0.67 -17.03 5.25 -317.04 -1.66 -18.69 16 11 C 0.09 3.01 6.30 38.16 0.24 3.25 16 12 C -0.09 -2.95 9.96 22.38 0.22 -2.73 16 13 C -0.21 -9.24 9.16 22.38 0.20 -9.03 16 14 C 0.11 5.44 6.65 22.59 0.15 5.59 16 15 O -0.25 -13.60 8.58 -23.00 -0.20 -13.80 16 16 C -0.40 -23.45 9.94 67.92 0.68 -22.77 16 17 H 0.09 5.24 5.43 -2.91 -0.02 5.22 16 18 C 0.01 0.60 5.49 84.83 0.47 1.07 16 19 N -0.92 -55.10 13.96 21.61 0.30 -54.80 16 20 Si 0.97 46.25 28.62 68.60 1.96 48.22 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 24 C -0.18 -7.46 9.98 22.37 0.22 -7.24 16 25 C -0.08 -2.86 8.69 22.38 0.19 -2.67 16 26 C 0.10 1.28 5.95 86.51 0.51 1.79 16 27 C -0.11 -1.30 4.79 30.82 0.15 -1.15 16 28 H 0.06 0.57 4.97 -2.39 -0.01 0.56 16 29 H 0.06 0.65 7.68 -2.39 -0.02 0.63 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.39 0.51 9.12 -74.06 -0.68 -0.17 16 34 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 1.59 6.99 -2.39 -0.02 1.57 16 37 H 0.08 1.11 6.69 -2.39 -0.02 1.09 16 38 H 0.42 7.48 6.31 -92.71 -0.58 6.89 16 39 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 40 H 0.12 5.69 5.63 -2.91 -0.02 5.67 16 41 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 42 H 0.13 5.09 8.06 -2.91 -0.02 5.07 16 43 H 0.14 5.13 6.22 -2.91 -0.02 5.12 16 44 H 0.09 0.89 6.69 -2.38 -0.02 0.88 16 45 H 0.09 0.89 5.65 -2.39 -0.01 0.88 16 46 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.09 0.99 7.64 -2.39 -0.02 0.97 16 Total: -1.00 -74.95 368.49 1.91 -73.04 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -0.23 Total: 21.71 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 6.10 Total: -12.01 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -3.84 Total: -87.67 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -2.08 Total: -43.29 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.96 Total: 48.22 kcal Total: -74.95 1.91 -73.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645680878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.045 kcal (2) G-P(sol) polarization free energy of solvation -74.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds