Wall clock time and date at job start Tue Mar 31 2020 20:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.50021 * 2 1 4 4 C 1.53044 * 109.49686 * 120.06801 * 2 1 3 5 5 C 1.53041 * 109.53788 * 181.31721 * 4 2 1 6 6 H 1.08999 * 109.50245 * 58.58111 * 5 4 2 7 7 O 1.42897 * 109.52333 * 178.66665 * 5 4 2 8 8 C 1.53196 * 109.31240 * 298.63088 * 5 4 2 9 9 N 1.46935 * 108.77342 * 54.63460 * 8 5 4 10 10 C 1.34777 * 120.62586 * 126.36843 * 9 8 5 11 11 O 1.21595 * 119.99547 * 185.31754 * 10 9 8 12 12 N 1.34777 * 120.00338 * 5.32463 * 10 9 8 13 13 C 1.40026 * 119.99828 * 174.57105 * 12 10 9 14 14 C 1.38910 * 120.00538 * 325.03626 * 13 12 10 15 15 C 1.38004 * 120.00225 * 180.25716 * 14 13 12 16 16 C 1.38906 * 119.99812 * 0.04131 * 15 14 13 17 17 O 1.35788 * 119.99530 * 179.97438 * 16 15 14 18 18 C 1.34816 * 116.99739 * 185.62145 * 17 16 15 19 19 H 1.08001 * 119.99853 * 5.38608 * 18 17 16 20 20 C 1.38626 * 119.99874 * 185.37960 * 18 17 16 21 21 N 1.31576 * 119.99864 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00038 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47004 * 90.00069 * 22 20 18 24 24 H 1.48493 * 109.47214 * 210.00366 * 22 20 18 25 25 H 1.48501 * 109.47154 * 330.00479 * 22 20 18 26 26 C 1.38897 * 120.00083 * 359.96134 * 16 15 14 27 27 C 1.38004 * 120.00380 * 0.02562 * 26 16 15 28 28 C 1.46918 * 118.73745 * 306.64363 * 9 8 5 29 29 H 1.08993 * 109.46918 * 299.93850 * 1 2 3 30 30 H 1.09005 * 109.47088 * 59.93470 * 1 2 3 31 31 H 1.09003 * 109.47165 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47209 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47360 * 300.06652 * 3 2 1 34 34 H 1.08996 * 109.47464 * 60.06470 * 3 2 1 35 35 H 1.09001 * 109.46082 * 61.29489 * 4 2 1 36 36 H 1.08996 * 109.45595 * 301.33389 * 4 2 1 37 37 H 0.96702 * 113.99917 * 179.85423 * 7 5 4 38 38 H 1.09000 * 109.58802 * 294.85099 * 8 5 4 39 39 H 1.08997 * 109.58936 * 174.42132 * 8 5 4 40 40 H 0.96999 * 119.99466 * 354.57253 * 12 10 9 41 41 H 1.08004 * 119.99957 * 0.25477 * 14 13 12 42 42 H 1.08001 * 120.00216 * 180.02562 * 15 14 13 43 43 H 0.97004 * 120.00081 * 179.97438 * 21 20 18 44 44 H 1.08006 * 119.99276 * 179.97438 * 26 16 15 45 45 H 1.08001 * 119.99692 * 179.97438 * 27 26 16 46 46 H 1.09008 * 109.58689 * 173.14268 * 28 9 8 47 47 H 1.08995 * 109.59140 * 293.56503 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0408 -0.7228 1.2485 5 6 3.5708 -0.6947 1.2662 6 1 3.9160 0.3391 1.2540 7 8 4.0467 -1.3425 2.4477 8 6 4.1053 -1.4268 0.0312 9 7 3.5046 -0.8295 -1.1694 10 6 4.2812 -0.3863 -2.1778 11 8 3.7796 0.1929 -3.1220 12 7 5.6137 -0.5851 -2.1397 13 6 6.4065 -0.2272 -3.2370 14 6 5.9104 -0.3657 -4.5271 15 6 6.6938 -0.0180 -5.6087 16 6 7.9788 0.4697 -5.4073 17 8 8.7498 0.8114 -6.4716 18 6 10.0247 1.1666 -6.2149 19 1 10.4156 1.0873 -5.2113 20 6 10.8337 1.6336 -7.2391 21 7 10.3572 1.7305 -8.4617 22 14 12.6005 2.1252 -6.8835 23 1 13.4866 0.9461 -7.0561 24 1 13.0146 3.1976 -7.8235 25 1 12.7046 2.6227 -5.4882 26 6 8.4749 0.6081 -4.1174 27 6 7.6914 0.2607 -3.0357 28 6 2.0416 -0.7191 -1.2470 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1308 1.4416 -0.0005 33 1 1.6767 1.9566 -0.8894 34 1 1.6786 1.9559 0.8905 35 1 1.6967 -1.7570 1.2357 36 1 1.6582 -0.2240 2.1389 37 1 5.0105 -1.3636 2.5236 38 1 3.8375 -2.4819 0.0874 39 1 5.1896 -1.3247 -0.0134 40 1 6.0233 -0.9761 -1.3522 41 1 4.9116 -0.7456 -4.6837 42 1 6.3080 -0.1252 -6.6117 43 1 10.9232 2.0577 -9.1784 44 1 9.4742 0.9870 -3.9610 45 1 8.0774 0.3680 -2.0328 46 1 1.7646 -0.1502 -2.1346 47 1 1.6021 -1.7153 -1.2971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647363143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:09 Heat of formation + Delta-G solvation = -70.688170 kcal Electronic energy + Delta-G solvation = -28916.428690 eV Core-core repulsion = 24872.335598 eV Total energy + Delta-G solvation = -4044.093092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.06396 -39.41771 -38.49202 -36.87684 -36.35643 -34.72854 -33.68201 -32.14719 -30.72175 -30.20622 -28.21710 -27.63542 -27.05016 -25.78670 -25.09194 -22.46727 -22.24311 -21.57762 -20.06071 -18.99293 -18.53389 -17.92207 -17.60187 -17.26506 -16.49320 -15.93184 -15.45024 -15.03868 -14.83323 -14.77748 -14.55058 -14.37773 -14.02744 -13.86468 -13.62405 -13.50483 -13.22967 -12.79806 -12.56453 -12.54916 -12.43574 -12.36247 -12.00989 -11.84866 -11.77900 -11.58364 -11.51704 -11.21507 -11.07784 -11.04199 -10.89485 -10.66943 -10.48671 -10.45041 -9.94585 -9.67171 -9.24725 -8.83278 -8.66986 -8.19517 -6.90210 -6.43261 -4.01356 2.15991 2.22471 2.50278 3.11703 3.13781 3.18755 3.25954 3.55874 3.90871 3.97813 4.21276 4.32509 4.43196 4.54595 4.59608 4.69626 4.79112 5.05356 5.11729 5.13982 5.20589 5.33033 5.33530 5.36951 5.50400 5.51293 5.53300 5.55540 5.61665 5.72550 5.77818 5.85129 5.90030 6.02491 6.11621 6.16868 6.24199 6.33098 6.66334 6.82538 6.91061 7.10114 7.15792 7.22042 7.24106 7.43464 7.80389 7.92702 8.01117 8.62187 9.02083 9.73086 10.74822 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024829 B = 0.002251 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.448903 B =12435.183651 C =13035.006945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 C -0.141 4.141 4 C -0.100 4.100 5 C 0.088 3.912 6 H 0.065 0.935 7 O -0.563 6.563 8 C 0.081 3.919 9 N -0.625 5.625 10 C 0.704 3.296 11 O -0.569 6.569 12 N -0.676 5.676 13 C 0.055 3.945 14 C -0.066 4.066 15 C -0.176 4.176 16 C 0.146 3.854 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.218 4.218 27 C -0.092 4.092 28 C 0.137 3.863 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.380 0.620 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.395 0.605 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.270 0.730 44 H 0.131 0.869 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.570 -6.071 21.268 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.079 4.079 3 C -0.198 4.198 4 C -0.137 4.137 5 C 0.029 3.971 6 H 0.083 0.917 7 O -0.368 6.368 8 C -0.043 4.043 9 N -0.365 5.365 10 C 0.406 3.594 11 O -0.445 6.445 12 N -0.325 5.325 13 C -0.038 4.038 14 C -0.086 4.086 15 C -0.196 4.196 16 C 0.092 3.908 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.497 5.497 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.238 4.238 27 C -0.113 4.113 28 C 0.014 3.986 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.227 0.773 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.231 0.769 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.080 0.920 44 H 0.149 0.851 45 H 0.126 0.874 46 H 0.118 0.882 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.550 -5.648 20.195 26.106 hybrid contribution 1.834 0.143 0.667 1.956 sum -13.716 -5.505 20.863 25.567 Atomic orbital electron populations 1.21780 0.93111 1.02192 1.02496 1.20852 0.96206 0.96278 0.94565 1.21892 1.01398 0.94568 1.01981 1.21522 0.92684 1.01558 0.97979 1.22237 0.95719 0.95546 0.83628 0.91667 1.86537 1.27025 1.81254 1.41959 1.22358 0.98001 0.98505 0.85477 1.47105 1.06548 1.65187 1.17645 1.15818 0.81443 0.79367 0.82757 1.90948 1.72910 1.46063 1.34574 1.42533 1.05205 1.65902 1.18865 1.17019 0.91843 1.09077 0.85855 1.20591 0.98984 0.98763 0.90241 1.20120 0.93131 1.07499 0.98858 1.19408 0.90932 0.92905 0.87567 1.84009 1.22630 1.73089 1.28331 1.21293 0.84047 1.44597 0.96782 0.89144 1.25285 1.00136 0.96563 0.94610 1.70050 1.36747 1.42861 1.00058 0.85718 0.80618 0.78546 0.78561 1.19910 1.20287 1.19253 1.20956 1.01834 1.09277 0.91718 1.20425 0.93325 0.99463 0.98087 1.21510 0.77841 1.00464 0.98805 0.92111 0.91884 0.92288 0.92477 0.92059 0.92650 0.90956 0.90839 0.77252 0.90412 0.90395 0.76893 0.85856 0.86131 0.92034 0.85118 0.87351 0.88229 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.48 37.16 0.32 -0.52 16 2 C -0.08 -0.59 0.77 -154.61 -0.12 -0.71 16 3 C -0.14 -1.23 7.98 37.15 0.30 -0.94 16 4 C -0.10 -0.72 4.37 -26.69 -0.12 -0.83 16 5 C 0.09 0.64 3.28 -26.61 -0.09 0.55 16 6 H 0.07 0.51 6.34 -51.93 -0.33 0.18 16 7 O -0.56 -3.90 13.32 -35.23 -0.47 -4.37 16 8 C 0.08 0.61 6.02 -3.70 -0.02 0.58 16 9 N -0.63 -6.60 2.42 -178.75 -0.43 -7.04 16 10 C 0.70 10.34 8.02 -86.92 -0.70 9.64 16 11 O -0.57 -10.67 13.56 5.28 0.07 -10.60 16 12 N -0.68 -9.46 5.25 -14.18 -0.07 -9.54 16 13 C 0.05 0.98 6.25 -83.62 -0.52 0.46 16 14 C -0.07 -1.31 8.65 -39.42 -0.34 -1.65 16 15 C -0.18 -3.91 9.98 -39.42 -0.39 -4.30 16 16 C 0.15 3.56 6.65 -39.09 -0.26 3.30 16 17 O -0.18 -5.09 9.76 -0.03 0.00 -5.09 16 18 C -0.39 -10.89 9.44 30.88 0.29 -10.60 16 19 H 0.09 2.31 5.28 -52.49 -0.28 2.03 16 20 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 22 Si 0.94 20.45 29.55 -169.99 -5.02 15.42 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 C -0.22 -4.68 9.13 -39.42 -0.36 -5.04 16 27 C -0.09 -1.66 9.96 -39.42 -0.39 -2.06 16 28 C 0.14 1.29 5.08 -3.93 -0.02 1.27 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.58 5.97 -51.93 -0.31 0.27 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.38 1.14 9.08 45.56 0.41 1.55 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.48 5.65 -51.93 -0.29 0.18 16 40 H 0.39 4.10 6.31 -40.82 -0.26 3.84 16 41 H 0.12 2.42 6.53 -52.48 -0.34 2.08 16 42 H 0.12 2.60 8.06 -52.49 -0.42 2.17 16 43 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.13 2.77 5.70 -52.48 -0.30 2.48 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.10 1.14 7.00 -51.92 -0.36 0.78 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 373.95 15.07 5.64 5.64 Total: -1.00 -34.24 373.95 -7.90 -42.14 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.84 Total: 7.96 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.52 Total: -9.89 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.25 Total: -41.21 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.40 Total: -20.06 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.24 -7.90 -42.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647363143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.544 kcal (2) G-P(sol) polarization free energy of solvation -34.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds