Wall clock time and date at job start Tue Mar 31 2020 20:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.50021 * 2 1 4 4 C 1.53044 * 109.49686 * 120.06801 * 2 1 3 5 5 C 1.53041 * 109.53788 * 181.31721 * 4 2 1 6 6 H 1.08999 * 109.50245 * 58.58111 * 5 4 2 7 7 O 1.42897 * 109.52333 * 178.66665 * 5 4 2 8 8 C 1.53196 * 109.31240 * 298.63088 * 5 4 2 9 9 N 1.46935 * 108.77342 * 54.63460 * 8 5 4 10 10 C 1.34777 * 120.62586 * 126.36843 * 9 8 5 11 11 O 1.21595 * 119.99547 * 185.31754 * 10 9 8 12 12 N 1.34777 * 120.00338 * 5.32463 * 10 9 8 13 13 C 1.40026 * 119.99828 * 174.57105 * 12 10 9 14 14 C 1.38910 * 120.00538 * 325.03626 * 13 12 10 15 15 C 1.38004 * 120.00225 * 180.25716 * 14 13 12 16 16 C 1.38906 * 119.99812 * 0.04131 * 15 14 13 17 17 O 1.35788 * 119.99530 * 179.97438 * 16 15 14 18 18 C 1.34816 * 116.99739 * 185.62145 * 17 16 15 19 19 H 1.08001 * 119.99853 * 5.38608 * 18 17 16 20 20 C 1.38626 * 119.99874 * 185.37960 * 18 17 16 21 21 N 1.31576 * 119.99864 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00038 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47004 * 90.00069 * 22 20 18 24 24 H 1.48493 * 109.47214 * 210.00366 * 22 20 18 25 25 H 1.48501 * 109.47154 * 330.00479 * 22 20 18 26 26 C 1.38897 * 120.00083 * 359.96134 * 16 15 14 27 27 C 1.38004 * 120.00380 * 0.02562 * 26 16 15 28 28 C 1.46918 * 118.73745 * 306.64363 * 9 8 5 29 29 H 1.08993 * 109.46918 * 299.93850 * 1 2 3 30 30 H 1.09005 * 109.47088 * 59.93470 * 1 2 3 31 31 H 1.09003 * 109.47165 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47209 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47360 * 300.06652 * 3 2 1 34 34 H 1.08996 * 109.47464 * 60.06470 * 3 2 1 35 35 H 1.09001 * 109.46082 * 61.29489 * 4 2 1 36 36 H 1.08996 * 109.45595 * 301.33389 * 4 2 1 37 37 H 0.96702 * 113.99917 * 179.85423 * 7 5 4 38 38 H 1.09000 * 109.58802 * 294.85099 * 8 5 4 39 39 H 1.08997 * 109.58936 * 174.42132 * 8 5 4 40 40 H 0.96999 * 119.99466 * 354.57253 * 12 10 9 41 41 H 1.08004 * 119.99957 * 0.25477 * 14 13 12 42 42 H 1.08001 * 120.00216 * 180.02562 * 15 14 13 43 43 H 0.97004 * 120.00081 * 179.97438 * 21 20 18 44 44 H 1.08006 * 119.99276 * 179.97438 * 26 16 15 45 45 H 1.08001 * 119.99692 * 179.97438 * 27 26 16 46 46 H 1.09008 * 109.58689 * 173.14268 * 28 9 8 47 47 H 1.08995 * 109.59140 * 293.56503 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0408 -0.7228 1.2485 5 6 3.5708 -0.6947 1.2662 6 1 3.9160 0.3391 1.2540 7 8 4.0467 -1.3425 2.4477 8 6 4.1053 -1.4268 0.0312 9 7 3.5046 -0.8295 -1.1694 10 6 4.2812 -0.3863 -2.1778 11 8 3.7796 0.1929 -3.1220 12 7 5.6137 -0.5851 -2.1397 13 6 6.4065 -0.2272 -3.2370 14 6 5.9104 -0.3657 -4.5271 15 6 6.6938 -0.0180 -5.6087 16 6 7.9788 0.4697 -5.4073 17 8 8.7498 0.8114 -6.4716 18 6 10.0247 1.1666 -6.2149 19 1 10.4156 1.0873 -5.2113 20 6 10.8337 1.6336 -7.2391 21 7 10.3572 1.7305 -8.4617 22 14 12.6005 2.1252 -6.8835 23 1 13.4866 0.9461 -7.0561 24 1 13.0146 3.1976 -7.8235 25 1 12.7046 2.6227 -5.4882 26 6 8.4749 0.6081 -4.1174 27 6 7.6914 0.2607 -3.0357 28 6 2.0416 -0.7191 -1.2470 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1308 1.4416 -0.0005 33 1 1.6767 1.9566 -0.8894 34 1 1.6786 1.9559 0.8905 35 1 1.6967 -1.7570 1.2357 36 1 1.6582 -0.2240 2.1389 37 1 5.0105 -1.3636 2.5236 38 1 3.8375 -2.4819 0.0874 39 1 5.1896 -1.3247 -0.0134 40 1 6.0233 -0.9761 -1.3522 41 1 4.9116 -0.7456 -4.6837 42 1 6.3080 -0.1252 -6.6117 43 1 10.9232 2.0577 -9.1784 44 1 9.4742 0.9870 -3.9610 45 1 8.0774 0.3680 -2.0328 46 1 1.7646 -0.1502 -2.1346 47 1 1.6021 -1.7153 -1.2971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647363143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:08 Heat of formation + Delta-G solvation = -94.961132 kcal Electronic energy + Delta-G solvation = -28917.481244 eV Core-core repulsion = 24872.335598 eV Total energy + Delta-G solvation = -4045.145647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.08019 -40.79898 -39.81987 -38.17833 -37.24624 -35.82425 -34.95991 -34.07981 -31.87823 -31.34288 -29.68690 -28.28175 -27.82413 -27.33865 -26.39378 -23.91435 -23.10461 -23.03632 -21.33576 -19.97299 -19.62373 -19.44655 -18.90466 -18.18717 -17.94194 -16.86516 -16.53054 -16.36013 -16.12976 -15.83120 -15.62314 -15.46578 -15.43676 -15.19605 -14.78939 -14.60530 -14.49294 -14.22712 -13.92661 -13.57734 -13.35551 -13.27330 -13.12999 -13.02083 -12.90455 -12.74053 -12.62349 -12.42512 -12.37687 -12.11176 -11.90141 -11.74636 -11.57265 -11.40525 -11.18920 -11.05370 -10.93485 -10.56936 -9.84439 -9.66615 -8.57312 -8.44221 -6.11440 0.52739 0.57635 1.37577 1.44889 1.48236 1.55484 2.02670 2.20088 2.71885 2.84539 3.17873 3.24669 3.52141 3.61720 3.71592 3.79804 3.93421 4.04348 4.08938 4.13248 4.21804 4.41734 4.47646 4.50429 4.59984 4.64662 4.71593 4.72163 4.75777 4.84279 4.93278 4.94969 5.02640 5.06613 5.12082 5.18034 5.26265 5.29414 5.32489 5.33634 5.42513 5.51176 5.57962 5.69561 5.86773 6.03931 6.18135 6.80576 6.86914 7.00098 7.45832 7.81342 8.79310 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024829 B = 0.002251 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.448903 B =12435.183651 C =13035.006945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C -0.139 4.139 4 C -0.098 4.098 5 C 0.095 3.905 6 H 0.060 0.940 7 O -0.572 6.572 8 C 0.077 3.923 9 N -0.614 5.614 10 C 0.701 3.299 11 O -0.614 6.614 12 N -0.664 5.664 13 C 0.083 3.917 14 C -0.071 4.071 15 C -0.187 4.187 16 C 0.107 3.893 17 O -0.232 6.232 18 C -0.411 4.411 19 H 0.107 0.893 20 C -0.026 4.026 21 N -0.923 5.923 22 Si 1.021 2.979 23 H -0.263 1.263 24 H -0.275 1.275 25 H -0.249 1.249 26 C -0.217 4.217 27 C -0.081 4.081 28 C 0.132 3.868 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.397 0.603 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.417 0.583 41 H 0.126 0.874 42 H 0.111 0.889 43 H 0.272 0.728 44 H 0.133 0.867 45 H 0.158 0.842 46 H 0.074 0.926 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.531 -7.052 25.729 30.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C -0.196 4.196 4 C -0.136 4.136 5 C 0.035 3.965 6 H 0.078 0.922 7 O -0.379 6.379 8 C -0.046 4.046 9 N -0.352 5.352 10 C 0.403 3.597 11 O -0.494 6.494 12 N -0.316 5.316 13 C -0.011 4.011 14 C -0.092 4.092 15 C -0.207 4.207 16 C 0.056 3.944 17 O -0.139 6.139 18 C -0.487 4.487 19 H 0.124 0.876 20 C -0.223 4.223 21 N -0.562 5.562 22 Si 0.840 3.160 23 H -0.188 1.188 24 H -0.200 1.200 25 H -0.173 1.173 26 C -0.237 4.237 27 C -0.101 4.101 28 C 0.009 3.991 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.248 0.752 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.258 0.742 41 H 0.144 0.856 42 H 0.130 0.870 43 H 0.081 0.919 44 H 0.151 0.849 45 H 0.176 0.824 46 H 0.093 0.907 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.551 -6.684 24.780 30.009 hybrid contribution 1.500 0.318 -0.444 1.597 sum -14.051 -6.366 24.336 28.813 Atomic orbital electron populations 1.21771 0.91852 1.03026 1.02717 1.20777 0.97134 0.95187 0.93940 1.21872 1.00439 0.95535 1.01802 1.21507 0.92866 1.01754 0.97464 1.22086 0.95646 0.95170 0.83572 0.92226 1.86516 1.28894 1.81077 1.41434 1.22611 0.98937 0.98989 0.84027 1.47112 1.06732 1.63847 1.17509 1.15986 0.81543 0.79138 0.83057 1.90935 1.73697 1.48054 1.36697 1.42329 1.04924 1.65834 1.18491 1.17114 0.91992 1.05790 0.86229 1.20675 0.98814 0.98891 0.90790 1.20224 0.93055 1.07968 0.99475 1.19847 0.91605 0.94610 0.88324 1.83973 1.23535 1.75796 1.30560 1.21857 0.84424 1.44641 0.97763 0.87600 1.26638 1.05279 0.96300 0.94133 1.70212 1.38976 1.45503 1.01475 0.84557 0.73926 0.78361 0.79182 1.18790 1.19985 1.17271 1.21113 1.02314 1.08873 0.91402 1.20779 0.92572 0.97454 0.99289 1.21652 0.77241 1.01320 0.98839 0.91161 0.92447 0.91164 0.93836 0.93733 0.91338 0.90365 0.90510 0.75225 0.89071 0.88632 0.74238 0.85616 0.87047 0.91937 0.84939 0.82445 0.90744 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.48 71.98 0.61 -0.76 16 2 C -0.07 -0.90 0.77 -52.25 -0.04 -0.94 16 3 C -0.14 -2.25 7.98 71.98 0.57 -1.68 16 4 C -0.10 -1.10 4.37 30.62 0.13 -0.96 16 5 C 0.10 1.03 3.28 30.67 0.10 1.13 16 6 H 0.06 0.74 6.34 -2.39 -0.02 0.73 16 7 O -0.57 -5.69 13.32 -148.98 -1.99 -7.68 16 8 C 0.08 0.86 6.02 86.36 0.52 1.38 16 9 N -0.61 -11.46 2.42 -837.71 -2.03 -13.49 16 10 C 0.70 19.20 8.02 179.05 1.44 20.64 16 11 O -0.61 -22.81 13.56 -4.02 -0.05 -22.87 16 12 N -0.66 -16.45 5.25 -317.04 -1.66 -18.11 16 13 C 0.08 2.79 6.25 38.15 0.24 3.03 16 14 C -0.07 -2.84 8.65 22.38 0.19 -2.65 16 15 C -0.19 -8.67 9.98 22.37 0.22 -8.45 16 16 C 0.11 5.41 6.65 22.59 0.15 5.57 16 17 O -0.23 -14.11 9.76 -23.02 -0.22 -14.34 16 18 C -0.41 -23.75 9.44 67.91 0.64 -23.10 16 19 H 0.11 5.48 5.28 -2.91 -0.02 5.47 16 20 C -0.03 -1.50 5.49 84.82 0.47 -1.04 16 21 N -0.92 -57.26 13.67 21.61 0.30 -56.96 16 22 Si 1.02 42.49 29.55 68.60 2.03 44.52 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 26 C -0.22 -9.19 9.13 22.37 0.20 -8.99 16 27 C -0.08 -2.66 9.96 22.37 0.22 -2.43 16 28 C 0.13 2.28 5.08 86.22 0.44 2.71 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.04 0.81 5.97 -2.38 -0.01 0.80 16 33 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.40 0.73 9.08 -74.06 -0.67 0.06 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.10 0.71 5.65 -2.39 -0.01 0.69 16 40 H 0.42 6.69 6.31 -92.71 -0.58 6.11 16 41 H 0.13 4.97 6.53 -2.91 -0.02 4.95 16 42 H 0.11 5.19 8.06 -2.91 -0.02 5.16 16 43 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 44 H 0.13 5.51 5.70 -2.91 -0.02 5.50 16 45 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 46 H 0.07 1.70 7.00 -2.38 -0.02 1.69 16 47 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -79.98 373.95 2.24 -77.74 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -0.24 Total: 27.72 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 6.11 Total: -16.54 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -3.40 Total: -88.56 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -2.26 Total: -44.89 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -79.98 2.24 -77.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647363143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.217 kcal (2) G-P(sol) polarization free energy of solvation -79.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds