Wall clock time and date at job start Tue Mar 31 2020 20:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.52372 * 2 1 4 4 C 1.53039 * 109.49864 * 239.91977 * 2 1 3 5 5 C 1.53037 * 109.53948 * 178.68063 * 4 2 1 6 6 H 1.09003 * 109.52642 * 301.39962 * 5 4 2 7 7 O 1.42898 * 109.49795 * 181.31830 * 5 4 2 8 8 C 1.53188 * 109.31215 * 61.36327 * 5 4 2 9 9 N 1.46926 * 108.78069 * 305.36732 * 8 5 4 10 10 C 1.34771 * 120.63216 * 233.58860 * 9 8 5 11 11 O 1.21593 * 120.00225 * 175.00827 * 10 9 8 12 12 N 1.34778 * 120.00047 * 355.00497 * 10 9 8 13 13 C 1.40026 * 120.00215 * 185.97089 * 12 10 9 14 14 C 1.38919 * 119.99937 * 33.83086 * 13 12 10 15 15 C 1.38013 * 119.99508 * 179.79434 * 14 13 12 16 16 C 1.38900 * 120.00221 * 0.46284 * 15 14 13 17 17 O 1.35778 * 120.00125 * 179.76662 * 16 15 14 18 18 C 1.34813 * 117.00458 * 173.87646 * 17 16 15 19 19 H 1.08003 * 119.99728 * 354.48368 * 18 17 16 20 20 C 1.38626 * 120.00353 * 174.48796 * 18 17 16 21 21 N 1.31574 * 119.99850 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00255 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46789 * 59.99904 * 22 20 18 24 24 H 1.48494 * 109.47236 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47237 * 300.00110 * 22 20 18 26 26 C 1.38905 * 120.00114 * 359.79304 * 16 15 14 27 27 C 1.38006 * 120.00195 * 359.97438 * 26 16 15 28 28 C 1.46923 * 118.73568 * 53.60487 * 9 8 5 29 29 H 1.08999 * 109.47102 * 299.92007 * 1 2 3 30 30 H 1.08994 * 109.47158 * 59.91908 * 1 2 3 31 31 H 1.09001 * 109.46960 * 179.91536 * 1 2 3 32 32 H 1.08996 * 109.47111 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47074 * 300.08407 * 3 2 1 34 34 H 1.09000 * 109.46905 * 60.08199 * 3 2 1 35 35 H 1.09000 * 109.46180 * 298.70383 * 4 2 1 36 36 H 1.09006 * 109.46003 * 58.66303 * 4 2 1 37 37 H 0.96708 * 114.00139 * 180.16135 * 7 5 4 38 38 H 1.09001 * 109.59152 * 185.57580 * 8 5 4 39 39 H 1.09005 * 109.70253 * 65.22613 * 8 5 4 40 40 H 0.97003 * 119.99795 * 5.96595 * 12 10 9 41 41 H 1.07995 * 120.00063 * 0.02562 * 14 13 12 42 42 H 1.07994 * 119.99711 * 180.23118 * 15 14 13 43 43 H 0.97006 * 120.00204 * 180.02562 * 21 20 18 44 44 H 1.08002 * 119.99878 * 180.02562 * 26 16 15 45 45 H 1.08002 * 119.99966 * 179.97438 * 27 26 16 46 46 H 1.09004 * 109.58751 * 186.61024 * 28 9 8 47 47 H 1.08996 * 109.70384 * 66.25146 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5708 -0.6949 -1.2660 6 1 3.9164 0.3388 -1.2544 7 8 4.0461 -1.3434 -2.4474 8 6 4.1053 -1.4265 -0.0308 9 7 3.5046 -0.8291 1.1696 10 6 4.2811 -0.3863 2.1782 11 8 3.7790 0.1878 3.1252 12 7 5.6143 -0.5799 2.1374 13 6 6.4062 -0.2334 3.2389 14 6 5.9023 -0.3679 4.5265 15 6 6.6845 -0.0303 5.6123 16 6 7.9720 0.4531 5.4174 17 8 8.7397 0.7897 6.4855 18 6 10.0199 1.1308 6.2359 19 1 10.4171 1.0425 5.2354 20 6 10.8266 1.5949 7.2634 21 7 10.3426 1.7029 8.4821 22 14 12.6002 2.0682 6.9174 23 1 12.6338 3.1616 5.9131 24 1 13.2432 2.5305 8.1735 25 1 13.3333 0.8893 6.3903 26 6 8.4739 0.5926 4.1297 27 6 7.6936 0.2505 3.0441 28 6 2.0414 -0.7238 1.2496 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 3.1313 1.4411 -0.0005 33 1 1.6772 1.9567 -0.8892 34 1 1.6796 1.9558 0.8907 35 1 1.6967 -1.7572 -1.2353 36 1 1.6582 -0.2244 -2.1389 37 1 5.0100 -1.3649 -2.5236 38 1 5.1896 -1.3245 0.0137 39 1 3.8397 -2.4823 -0.0855 40 1 6.0252 -0.9595 1.3449 41 1 4.8999 -0.7402 4.6779 42 1 6.2941 -0.1384 6.6134 43 1 10.9069 2.0279 9.2010 44 1 9.4752 0.9681 3.9782 45 1 8.0838 0.3594 2.0429 46 1 1.7638 -0.1579 2.1389 47 1 1.6034 -1.7207 1.2993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647363145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:13 Heat of formation + Delta-G solvation = -70.512751 kcal Electronic energy + Delta-G solvation = -28915.636951 eV Core-core repulsion = 24871.551466 eV Total energy + Delta-G solvation = -4044.085485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.05856 -39.41284 -38.48935 -36.87027 -36.34949 -34.73071 -33.68234 -32.14551 -30.71794 -30.20349 -28.21563 -27.63452 -27.04975 -25.78164 -25.08615 -22.46783 -22.24694 -21.57292 -20.05695 -18.99569 -18.53369 -17.91870 -17.60153 -17.26203 -16.49133 -15.93900 -15.44287 -15.03980 -14.82784 -14.77499 -14.55367 -14.37528 -14.02836 -13.86853 -13.62503 -13.50201 -13.22811 -12.79015 -12.56389 -12.54957 -12.43520 -12.35597 -12.01248 -11.84813 -11.77811 -11.59274 -11.51674 -11.21188 -11.06796 -11.02893 -10.89529 -10.69140 -10.48688 -10.45848 -9.94021 -9.66873 -9.25450 -8.83181 -8.66576 -8.19295 -6.89545 -6.42854 -4.01050 2.16033 2.22584 2.50375 3.12681 3.13813 3.17696 3.26023 3.55728 3.90802 3.98116 4.21295 4.32447 4.42861 4.54287 4.59859 4.69531 4.79085 5.05042 5.11901 5.14028 5.20614 5.33446 5.33550 5.36875 5.50416 5.51299 5.53320 5.55569 5.61734 5.72600 5.78014 5.84860 5.90014 6.02414 6.11557 6.16973 6.24272 6.33101 6.66250 6.82917 6.91242 7.10032 7.15744 7.22127 7.23951 7.43559 7.80611 7.92743 8.01347 8.61907 9.02313 9.73382 10.75138 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.002250 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.646800 B =12440.010678 C =13044.507760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 C -0.141 4.141 4 C -0.100 4.100 5 C 0.089 3.911 6 H 0.066 0.934 7 O -0.563 6.563 8 C 0.081 3.919 9 N -0.625 5.625 10 C 0.704 3.296 11 O -0.569 6.569 12 N -0.676 5.676 13 C 0.055 3.945 14 C -0.066 4.066 15 C -0.176 4.176 16 C 0.145 3.855 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.218 4.218 27 C -0.093 4.093 28 C 0.137 3.863 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.380 0.620 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.395 0.605 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.270 0.730 44 H 0.131 0.869 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.540 -5.999 -21.310 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.079 4.079 3 C -0.198 4.198 4 C -0.137 4.137 5 C 0.029 3.971 6 H 0.083 0.917 7 O -0.368 6.368 8 C -0.043 4.043 9 N -0.365 5.365 10 C 0.406 3.594 11 O -0.445 6.445 12 N -0.325 5.325 13 C -0.038 4.038 14 C -0.086 4.086 15 C -0.196 4.196 16 C 0.092 3.908 17 O -0.080 6.080 18 C -0.468 4.468 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.497 5.497 22 Si 0.765 3.235 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.238 4.238 27 C -0.113 4.113 28 C 0.014 3.986 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.227 0.773 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.231 0.769 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.080 0.920 44 H 0.149 0.851 45 H 0.126 0.874 46 H 0.118 0.882 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.522 -5.581 -20.230 26.102 hybrid contribution 1.840 0.141 -0.672 1.964 sum -13.681 -5.440 -20.901 25.566 Atomic orbital electron populations 1.21780 0.93140 1.02187 1.02489 1.20927 0.96175 0.96243 0.94529 1.21885 1.01394 0.94561 1.01980 1.21522 0.92683 1.01558 0.97982 1.22234 0.95724 0.95533 0.83615 0.91657 1.86539 1.27033 1.81229 1.41979 1.22353 0.98001 0.98499 0.85487 1.47103 1.06546 1.65195 1.17634 1.15814 0.81444 0.79362 0.82765 1.90946 1.72925 1.46253 1.34363 1.42537 1.05150 1.66577 1.18232 1.17032 0.91773 1.09178 0.85803 1.20603 0.99007 0.98818 0.90214 1.20123 0.93093 1.07558 0.98827 1.19407 0.90973 0.92927 0.87533 1.84005 1.22358 1.73429 1.28252 1.21243 0.83573 1.45005 0.96938 0.89211 1.25281 1.00161 0.96526 0.94598 1.70039 1.36850 1.42727 1.00115 0.85791 0.80480 0.79140 0.78062 1.19555 1.20307 1.19533 1.20954 1.01811 1.09295 0.91700 1.20419 0.93339 0.99517 0.98073 1.21597 0.77807 1.00445 0.98787 0.91892 0.92116 0.92291 0.92475 0.92631 0.92075 0.90959 0.90842 0.77254 0.90417 0.90418 0.76888 0.85788 0.86136 0.91981 0.85131 0.87353 0.88239 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.48 37.16 0.32 -0.53 16 2 C -0.08 -0.59 0.77 -154.39 -0.12 -0.70 16 3 C -0.14 -1.23 7.99 37.16 0.30 -0.93 16 4 C -0.10 -0.72 4.36 -26.69 -0.12 -0.83 16 5 C 0.09 0.64 3.28 -26.61 -0.09 0.55 16 6 H 0.07 0.51 6.34 -51.93 -0.33 0.18 16 7 O -0.56 -3.90 13.32 -35.23 -0.47 -4.36 16 8 C 0.08 0.61 6.02 -3.71 -0.02 0.58 16 9 N -0.63 -6.60 2.41 -178.50 -0.43 -7.03 16 10 C 0.70 10.33 8.02 -86.92 -0.70 9.63 16 11 O -0.57 -10.66 13.51 5.28 0.07 -10.59 16 12 N -0.68 -9.46 5.25 -14.18 -0.07 -9.54 16 13 C 0.05 0.99 6.27 -83.61 -0.52 0.46 16 14 C -0.07 -1.32 8.64 -39.41 -0.34 -1.66 16 15 C -0.18 -3.91 9.98 -39.42 -0.39 -4.31 16 16 C 0.15 3.56 6.65 -39.09 -0.26 3.30 16 17 O -0.18 -5.08 9.75 0.01 0.00 -5.08 16 18 C -0.39 -10.91 9.43 30.88 0.29 -10.62 16 19 H 0.09 2.29 5.30 -52.48 -0.28 2.01 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.42 13.67 55.48 0.76 -24.66 16 22 Si 0.94 20.44 29.55 -169.99 -5.02 15.42 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 C -0.22 -4.68 9.12 -39.42 -0.36 -5.04 16 27 C -0.09 -1.67 9.96 -39.42 -0.39 -2.06 16 28 C 0.14 1.29 5.12 -3.71 -0.02 1.27 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.58 5.97 -51.93 -0.31 0.27 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.38 1.13 9.08 45.56 0.41 1.55 16 38 H 0.08 0.47 5.64 -51.93 -0.29 0.18 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.39 4.10 6.30 -40.82 -0.26 3.84 16 41 H 0.12 2.44 6.47 -52.49 -0.34 2.10 16 42 H 0.12 2.60 8.06 -52.49 -0.42 2.17 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.13 2.77 5.71 -52.49 -0.30 2.47 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.10 1.14 7.00 -51.93 -0.36 0.78 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -34.24 373.90 -7.90 -42.14 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.84 Total: 7.98 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.52 Total: -9.92 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.25 Total: -41.22 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.40 Total: -20.04 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.24 -7.90 -42.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647363145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.374 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds