Wall clock time and date at job start Tue Mar 31 2020 20:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.52372 * 2 1 4 4 C 1.53039 * 109.49864 * 239.91977 * 2 1 3 5 5 C 1.53037 * 109.53948 * 178.68063 * 4 2 1 6 6 H 1.09003 * 109.52642 * 301.39962 * 5 4 2 7 7 O 1.42898 * 109.49795 * 181.31830 * 5 4 2 8 8 C 1.53188 * 109.31215 * 61.36327 * 5 4 2 9 9 N 1.46926 * 108.78069 * 305.36732 * 8 5 4 10 10 C 1.34771 * 120.63216 * 233.58860 * 9 8 5 11 11 O 1.21593 * 120.00225 * 175.00827 * 10 9 8 12 12 N 1.34778 * 120.00047 * 355.00497 * 10 9 8 13 13 C 1.40026 * 120.00215 * 185.97089 * 12 10 9 14 14 C 1.38919 * 119.99937 * 33.83086 * 13 12 10 15 15 C 1.38013 * 119.99508 * 179.79434 * 14 13 12 16 16 C 1.38900 * 120.00221 * 0.46284 * 15 14 13 17 17 O 1.35778 * 120.00125 * 179.76662 * 16 15 14 18 18 C 1.34813 * 117.00458 * 173.87646 * 17 16 15 19 19 H 1.08003 * 119.99728 * 354.48368 * 18 17 16 20 20 C 1.38626 * 120.00353 * 174.48796 * 18 17 16 21 21 N 1.31574 * 119.99850 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00255 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46789 * 59.99904 * 22 20 18 24 24 H 1.48494 * 109.47236 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47237 * 300.00110 * 22 20 18 26 26 C 1.38905 * 120.00114 * 359.79304 * 16 15 14 27 27 C 1.38006 * 120.00195 * 359.97438 * 26 16 15 28 28 C 1.46923 * 118.73568 * 53.60487 * 9 8 5 29 29 H 1.08999 * 109.47102 * 299.92007 * 1 2 3 30 30 H 1.08994 * 109.47158 * 59.91908 * 1 2 3 31 31 H 1.09001 * 109.46960 * 179.91536 * 1 2 3 32 32 H 1.08996 * 109.47111 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47074 * 300.08407 * 3 2 1 34 34 H 1.09000 * 109.46905 * 60.08199 * 3 2 1 35 35 H 1.09000 * 109.46180 * 298.70383 * 4 2 1 36 36 H 1.09006 * 109.46003 * 58.66303 * 4 2 1 37 37 H 0.96708 * 114.00139 * 180.16135 * 7 5 4 38 38 H 1.09001 * 109.59152 * 185.57580 * 8 5 4 39 39 H 1.09005 * 109.70253 * 65.22613 * 8 5 4 40 40 H 0.97003 * 119.99795 * 5.96595 * 12 10 9 41 41 H 1.07995 * 120.00063 * 0.02562 * 14 13 12 42 42 H 1.07994 * 119.99711 * 180.23118 * 15 14 13 43 43 H 0.97006 * 120.00204 * 180.02562 * 21 20 18 44 44 H 1.08002 * 119.99878 * 180.02562 * 26 16 15 45 45 H 1.08002 * 119.99966 * 179.97438 * 27 26 16 46 46 H 1.09004 * 109.58751 * 186.61024 * 28 9 8 47 47 H 1.08996 * 109.70384 * 66.25146 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5708 -0.6949 -1.2660 6 1 3.9164 0.3388 -1.2544 7 8 4.0461 -1.3434 -2.4474 8 6 4.1053 -1.4265 -0.0308 9 7 3.5046 -0.8291 1.1696 10 6 4.2811 -0.3863 2.1782 11 8 3.7790 0.1878 3.1252 12 7 5.6143 -0.5799 2.1374 13 6 6.4062 -0.2334 3.2389 14 6 5.9023 -0.3679 4.5265 15 6 6.6845 -0.0303 5.6123 16 6 7.9720 0.4531 5.4174 17 8 8.7397 0.7897 6.4855 18 6 10.0199 1.1308 6.2359 19 1 10.4171 1.0425 5.2354 20 6 10.8266 1.5949 7.2634 21 7 10.3426 1.7029 8.4821 22 14 12.6002 2.0682 6.9174 23 1 12.6338 3.1616 5.9131 24 1 13.2432 2.5305 8.1735 25 1 13.3333 0.8893 6.3903 26 6 8.4739 0.5926 4.1297 27 6 7.6936 0.2505 3.0441 28 6 2.0414 -0.7238 1.2496 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 3.1313 1.4411 -0.0005 33 1 1.6772 1.9567 -0.8892 34 1 1.6796 1.9558 0.8907 35 1 1.6967 -1.7572 -1.2353 36 1 1.6582 -0.2244 -2.1389 37 1 5.0100 -1.3649 -2.5236 38 1 5.1896 -1.3245 0.0137 39 1 3.8397 -2.4823 -0.0855 40 1 6.0252 -0.9595 1.3449 41 1 4.8999 -0.7402 4.6779 42 1 6.2941 -0.1384 6.6134 43 1 10.9069 2.0279 9.2010 44 1 9.4752 0.9681 3.9782 45 1 8.0838 0.3594 2.0429 46 1 1.7638 -0.1579 2.1389 47 1 1.6034 -1.7207 1.2993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647363145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:12 Heat of formation + Delta-G solvation = -94.778429 kcal Electronic energy + Delta-G solvation = -28916.689190 eV Core-core repulsion = 24871.551466 eV Total energy + Delta-G solvation = -4045.137724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.07841 -40.79309 -39.81411 -38.17603 -37.23469 -35.82639 -34.95946 -34.07895 -31.87615 -31.33800 -29.68592 -28.28071 -27.82200 -27.33567 -26.38740 -23.91780 -23.10316 -23.03411 -21.33167 -19.97375 -19.62195 -19.44523 -18.89932 -18.18499 -17.94426 -16.87316 -16.52287 -16.36167 -16.12965 -15.83460 -15.62119 -15.46213 -15.43113 -15.19415 -14.78571 -14.60001 -14.48951 -14.22700 -13.92666 -13.57293 -13.36132 -13.27411 -13.13266 -13.01999 -12.90486 -12.70535 -12.62392 -12.42239 -12.39411 -12.14213 -11.89771 -11.74321 -11.57373 -11.39930 -11.19141 -11.05205 -10.93571 -10.56477 -9.84284 -9.66637 -8.56593 -8.43876 -6.11202 0.52820 0.57751 1.37559 1.45351 1.49233 1.54241 2.02563 2.20424 2.71693 2.84727 3.18036 3.24767 3.52479 3.61812 3.71361 3.79668 3.93185 4.04306 4.08906 4.13544 4.21831 4.41647 4.47546 4.50605 4.59961 4.64671 4.71630 4.72310 4.75890 4.84363 4.93411 4.95050 5.02648 5.06516 5.12215 5.18298 5.25979 5.29295 5.32618 5.33718 5.42555 5.51111 5.57983 5.69676 5.86816 6.03925 6.18270 6.80572 6.86946 7.00253 7.45587 7.81575 8.79412 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.002250 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.646800 B =12440.010678 C =13044.507760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C -0.139 4.139 4 C -0.098 4.098 5 C 0.095 3.905 6 H 0.060 0.940 7 O -0.572 6.572 8 C 0.077 3.923 9 N -0.614 5.614 10 C 0.701 3.299 11 O -0.614 6.614 12 N -0.664 5.664 13 C 0.083 3.917 14 C -0.072 4.072 15 C -0.187 4.187 16 C 0.106 3.894 17 O -0.232 6.232 18 C -0.412 4.412 19 H 0.106 0.894 20 C -0.026 4.026 21 N -0.923 5.923 22 Si 1.020 2.980 23 H -0.256 1.256 24 H -0.275 1.275 25 H -0.255 1.255 26 C -0.217 4.217 27 C -0.081 4.081 28 C 0.132 3.868 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.397 0.603 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.417 0.583 41 H 0.127 0.873 42 H 0.111 0.889 43 H 0.272 0.728 44 H 0.133 0.867 45 H 0.158 0.842 46 H 0.074 0.926 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.472 -6.980 -25.773 30.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C -0.196 4.196 4 C -0.136 4.136 5 C 0.036 3.964 6 H 0.078 0.922 7 O -0.379 6.379 8 C -0.046 4.046 9 N -0.352 5.352 10 C 0.403 3.597 11 O -0.494 6.494 12 N -0.316 5.316 13 C -0.011 4.011 14 C -0.093 4.093 15 C -0.207 4.207 16 C 0.056 3.944 17 O -0.139 6.139 18 C -0.488 4.488 19 H 0.124 0.876 20 C -0.223 4.223 21 N -0.562 5.562 22 Si 0.839 3.161 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.179 1.179 26 C -0.237 4.237 27 C -0.101 4.101 28 C 0.009 3.991 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.248 0.752 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.258 0.742 41 H 0.144 0.856 42 H 0.129 0.871 43 H 0.081 0.919 44 H 0.151 0.849 45 H 0.176 0.824 46 H 0.092 0.908 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.493 -6.616 -24.818 29.996 hybrid contribution 1.497 0.318 0.437 1.591 sum -13.997 -6.297 -24.381 28.810 Atomic orbital electron populations 1.21771 0.91889 1.03019 1.02705 1.20851 0.97099 0.95158 0.93898 1.21866 1.00449 0.95520 1.01796 1.21507 0.92870 1.01750 0.97467 1.22083 0.95645 0.95166 0.83553 0.92196 1.86518 1.28904 1.81053 1.41453 1.22607 0.98938 0.98978 0.84043 1.47109 1.06731 1.63854 1.17492 1.15984 0.81545 0.79136 0.83063 1.90933 1.73707 1.48236 1.36486 1.42332 1.04876 1.66499 1.17862 1.17125 0.91938 1.05857 0.86185 1.20685 0.98839 0.98965 0.90761 1.20225 0.93015 1.08034 0.99447 1.19847 0.91655 0.94645 0.88283 1.83969 1.23252 1.76147 1.30492 1.21817 0.83957 1.45055 0.97935 0.87628 1.26637 1.05366 0.96220 0.94101 1.70206 1.39054 1.45387 1.01514 0.84622 0.73787 0.79440 0.78210 1.18035 1.20016 1.17903 1.21117 1.02299 1.08876 0.91392 1.20774 0.92597 0.97505 0.99267 1.21740 0.77204 1.01308 0.98822 0.92459 0.91166 0.91171 0.93816 0.91312 0.93758 0.90376 0.90510 0.75225 0.88652 0.89091 0.74233 0.85567 0.87062 0.91930 0.84918 0.82426 0.90752 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.48 71.98 0.61 -0.76 16 2 C -0.07 -0.90 0.77 -52.10 -0.04 -0.94 16 3 C -0.14 -2.24 7.99 71.98 0.58 -1.67 16 4 C -0.10 -1.10 4.36 30.62 0.13 -0.96 16 5 C 0.10 1.03 3.28 30.67 0.10 1.13 16 6 H 0.06 0.74 6.34 -2.39 -0.02 0.72 16 7 O -0.57 -5.68 13.32 -148.98 -1.98 -7.67 16 8 C 0.08 0.86 6.02 86.36 0.52 1.38 16 9 N -0.61 -11.45 2.41 -836.91 -2.02 -13.46 16 10 C 0.70 19.20 8.02 179.06 1.44 20.63 16 11 O -0.61 -22.79 13.51 -4.01 -0.05 -22.85 16 12 N -0.66 -16.45 5.25 -317.04 -1.67 -18.11 16 13 C 0.08 2.80 6.27 38.16 0.24 3.04 16 14 C -0.07 -2.88 8.64 22.38 0.19 -2.69 16 15 C -0.19 -8.68 9.98 22.37 0.22 -8.46 16 16 C 0.11 5.40 6.65 22.59 0.15 5.55 16 17 O -0.23 -14.12 9.75 -22.88 -0.22 -14.35 16 18 C -0.41 -23.81 9.43 67.91 0.64 -23.16 16 19 H 0.11 5.46 5.30 -2.91 -0.02 5.45 16 20 C -0.03 -1.48 5.49 84.82 0.47 -1.02 16 21 N -0.92 -57.28 13.67 21.61 0.30 -56.99 16 22 Si 1.02 42.47 29.55 68.60 2.03 44.50 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 24 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 26 C -0.22 -9.19 9.12 22.37 0.20 -8.98 16 27 C -0.08 -2.67 9.96 22.38 0.22 -2.45 16 28 C 0.13 2.27 5.12 86.36 0.44 2.71 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.04 0.81 5.97 -2.39 -0.01 0.80 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.40 0.72 9.08 -74.05 -0.67 0.05 16 38 H 0.10 0.70 5.64 -2.39 -0.01 0.69 16 39 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.42 6.69 6.30 -92.71 -0.58 6.10 16 41 H 0.13 5.00 6.47 -2.91 -0.02 4.98 16 42 H 0.11 5.19 8.06 -2.91 -0.02 5.16 16 43 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 44 H 0.13 5.51 5.71 -2.91 -0.02 5.49 16 45 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 46 H 0.07 1.70 7.00 -2.38 -0.02 1.68 16 47 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -80.02 373.90 2.26 -77.76 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.24 Total: 27.81 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 6.12 Total: -16.65 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -3.39 Total: -88.56 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -2.26 Total: -44.86 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -80.02 2.26 -77.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647363145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.017 kcal (2) G-P(sol) polarization free energy of solvation -80.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds