Wall clock time and date at job start Tue Mar 31 2020 20:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35982 * 117.00225 * 2 1 4 4 C 1.38701 * 119.99930 * 180.02562 * 3 2 1 5 5 C 1.38127 * 119.99785 * 179.97438 * 4 3 2 6 6 C 1.38705 * 120.00073 * 0.02693 * 5 4 3 7 7 O 1.35986 * 119.99695 * 179.70526 * 6 5 4 8 8 C 1.42899 * 116.99848 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.47216 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99965 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00022 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00073 * 179.97438 * 11 9 8 13 13 C 1.52999 * 110.64449 * 300.70669 * 12 11 9 14 14 C 1.55161 * 110.72333 * 177.55758 * 12 11 9 15 15 C 1.55385 * 101.36943 * 277.04992 * 14 12 11 16 16 N 1.47423 * 104.87036 * 323.01225 * 15 14 12 17 17 C 1.36938 * 125.64925 * 204.09399 * 16 15 14 18 18 H 1.07998 * 120.00551 * 180.02562 * 17 16 15 19 19 C 1.38816 * 119.99861 * 0.04723 * 17 16 15 20 20 N 1.31621 * 119.99897 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99951 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47299 * 60.00103 * 21 19 17 23 23 H 1.48505 * 109.47016 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47505 * 299.99926 * 21 19 17 25 25 C 1.47025 * 108.70632 * 24.13824 * 16 15 14 26 26 C 1.38695 * 119.99786 * 359.97304 * 6 5 4 27 27 C 1.38128 * 120.00139 * 0.04612 * 26 6 5 28 28 H 1.09001 * 109.46663 * 300.00063 * 1 2 3 29 29 H 1.08995 * 109.47194 * 59.99542 * 1 2 3 30 30 H 1.08997 * 109.47489 * 179.97438 * 1 2 3 31 31 H 1.07992 * 119.99809 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.00344 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.47068 * 300.00029 * 8 7 6 34 34 H 1.09005 * 109.47117 * 59.99257 * 8 7 6 35 35 H 0.97005 * 119.99947 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47331 * 59.29402 * 13 12 11 37 37 H 1.09004 * 109.47122 * 179.29971 * 13 12 11 38 38 H 1.08994 * 109.46921 * 299.29554 * 13 12 11 39 39 H 1.09005 * 110.99766 * 35.21912 * 14 12 11 40 40 H 1.09000 * 111.00594 * 159.06691 * 14 12 11 41 41 H 1.08991 * 110.34211 * 204.16631 * 15 14 12 42 42 H 1.09003 * 110.35066 * 81.86490 * 15 14 12 43 43 H 0.96997 * 119.99789 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.87716 * 239.52541 * 25 16 15 45 45 H 1.08997 * 109.88941 * 118.35593 * 25 16 15 46 46 H 1.08002 * 119.99461 * 179.97438 * 26 6 5 47 47 H 1.08005 * 119.99887 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4315 1.2841 -0.0005 5 6 4.0586 2.5148 -0.0011 6 6 3.3032 3.6781 -0.0005 7 8 3.9207 4.8897 0.0050 8 6 3.0808 6.0458 0.0047 9 6 3.9350 7.2873 0.0119 10 8 5.1440 7.1914 0.0163 11 7 3.3554 8.5041 0.0123 12 6 4.1858 9.7109 0.0199 13 6 5.0877 9.7375 1.2555 14 6 3.3029 10.9853 -0.0429 15 6 3.0358 11.0980 -1.5695 16 7 4.2950 10.6713 -2.2064 17 6 4.7139 11.0238 -3.4616 18 1 5.6568 10.6567 -3.8392 19 6 3.9269 11.8536 -4.2484 20 7 2.7778 12.3009 -3.7883 21 14 4.4988 12.3351 -5.9603 22 1 4.6700 11.1134 -6.7870 23 1 3.4859 13.2202 -6.5898 24 1 5.7945 13.0541 -5.8654 25 6 5.0260 9.8036 -1.2714 26 6 1.9182 3.6055 0.0000 27 6 1.2911 2.3748 0.0010 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0196 0.3784 -0.0014 32 1 5.1372 2.5714 -0.0019 33 1 2.4550 6.0401 -0.8878 34 1 2.4479 6.0354 0.8922 35 1 2.3884 8.5807 0.0084 36 1 5.7287 8.8559 1.2565 37 1 5.7050 10.6356 1.2355 38 1 4.4718 9.7399 2.1548 39 1 2.3742 10.8447 0.5103 40 1 3.8466 11.8558 0.3242 41 1 2.8048 12.1285 -1.8386 42 1 2.2199 10.4367 -1.8613 43 1 2.2280 12.8810 -4.3380 44 1 6.0011 10.2370 -1.0488 45 1 5.1493 8.8114 -1.7054 46 1 1.3300 4.5113 0.0009 47 1 0.2125 2.3183 0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699822641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:24 Heat of formation + Delta-G solvation = -45.256359 kcal Electronic energy + Delta-G solvation = -28460.215474 eV Core-core repulsion = 24417.225188 eV Total energy + Delta-G solvation = -4042.990286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.73475 -39.99471 -39.03267 -37.31841 -36.34703 -34.04517 -32.11204 -31.46751 -30.40620 -29.74796 -28.70717 -27.93301 -27.27040 -25.68509 -23.73921 -23.05478 -22.16872 -20.88987 -20.31387 -19.13968 -18.69466 -17.88213 -17.46282 -16.76562 -16.41162 -16.22175 -15.97658 -15.57574 -15.06513 -14.69039 -14.57272 -14.35916 -13.99179 -13.71813 -13.63525 -13.22651 -13.11300 -12.94809 -12.73598 -12.64835 -12.27410 -12.08462 -12.01144 -11.75634 -11.68423 -11.58343 -11.01896 -10.95304 -10.84852 -10.67396 -10.43704 -10.37030 -10.12322 -9.95625 -9.67149 -9.34532 -9.30324 -8.72055 -8.64571 -7.97431 -6.82476 -5.66083 -3.06376 0.98900 1.22240 2.57330 2.76339 3.00816 3.41502 3.45243 3.46915 3.48239 3.72438 4.41761 4.49480 4.50590 4.67823 4.75679 4.80075 4.82762 4.92090 4.96744 5.10272 5.14993 5.19930 5.23358 5.36927 5.47751 5.54384 5.59358 5.71176 5.77181 5.99760 6.00213 6.06444 6.13847 6.19755 6.30403 6.31335 6.42106 6.48947 6.66811 6.80823 6.99605 7.09438 7.24239 7.41945 7.62213 7.72137 7.82415 8.33827 8.42004 9.22558 9.83059 10.47638 11.38309 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.002315 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.880587 B =12093.288944 C =12927.523300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.085 3.915 4 C -0.110 4.110 5 C -0.109 4.109 6 C 0.099 3.901 7 O -0.286 6.286 8 C 0.041 3.959 9 C 0.517 3.483 10 O -0.513 6.513 11 N -0.705 5.705 12 C 0.161 3.839 13 C -0.152 4.152 14 C -0.147 4.147 15 C 0.153 3.847 16 N -0.604 5.604 17 C -0.218 4.218 18 H 0.076 0.924 19 C -0.013 4.013 20 N -0.926 5.926 21 Si 0.915 3.085 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.136 3.864 26 C -0.172 4.172 27 C -0.167 4.167 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.398 0.602 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.010 0.990 43 H 0.252 0.748 44 H 0.032 0.968 45 H 0.033 0.967 46 H 0.132 0.868 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 -18.779 12.431 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.041 3.959 4 C -0.129 4.129 5 C -0.127 4.127 6 C 0.054 3.946 7 O -0.199 6.199 8 C -0.038 4.038 9 C 0.301 3.699 10 O -0.388 6.388 11 N -0.357 5.357 12 C 0.076 3.924 13 C -0.210 4.210 14 C -0.186 4.186 15 C 0.028 3.972 16 N -0.330 5.330 17 C -0.346 4.346 18 H 0.094 0.906 19 C -0.208 4.208 20 N -0.575 5.575 21 Si 0.746 3.254 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.009 3.991 26 C -0.191 4.191 27 C -0.186 4.186 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.232 0.768 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.028 0.972 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.150 0.850 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.974 -18.858 12.240 23.263 hybrid contribution -0.919 0.435 -0.985 1.416 sum -6.893 -18.423 11.255 22.663 Atomic orbital electron populations 1.23030 0.78583 1.03843 1.01288 1.86069 1.21177 1.26738 1.89374 1.18906 0.92328 0.84200 1.00486 1.20232 0.91313 0.97831 1.03497 1.20285 1.00604 0.88814 1.03014 1.18979 0.91002 0.85557 0.99081 1.86189 1.33927 1.11027 1.88748 1.22512 0.93355 0.84398 1.03523 1.19820 0.88808 0.83977 0.77328 1.90713 1.13982 1.86494 1.47633 1.45832 1.10156 1.04765 1.74990 1.21382 0.91574 0.83593 0.95856 1.22063 0.99712 1.03322 0.95915 1.23450 0.98172 0.95302 1.01640 1.22026 0.87506 1.02923 0.84755 1.44494 1.19741 1.55022 1.13755 1.19059 1.02907 1.23478 0.89168 0.90564 1.24761 0.96812 1.00387 0.98835 1.69759 1.12704 1.38712 1.36324 0.86138 0.77504 0.78043 0.83760 1.21273 1.21600 1.21134 1.21619 0.93994 0.94800 0.88668 1.21084 0.93313 0.98585 1.06081 1.21014 1.00007 0.91640 1.05901 0.92765 0.92708 0.88330 0.84428 0.84117 0.89049 0.89350 0.76775 0.90775 0.91630 0.93117 0.91818 0.90392 0.87394 0.97193 0.93755 0.95047 0.94913 0.85014 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.02 10.50 -19.68 -0.21 -3.23 16 3 C 0.09 0.87 6.69 -39.24 -0.26 0.61 16 4 C -0.11 -1.11 9.98 -39.45 -0.39 -1.50 16 5 C -0.11 -1.21 9.98 -39.45 -0.39 -1.60 16 6 C 0.10 1.21 6.69 -39.24 -0.26 0.94 16 7 O -0.29 -4.08 9.67 -39.61 -0.38 -4.46 16 8 C 0.04 0.49 5.22 36.00 0.19 0.68 16 9 C 0.52 8.15 7.12 -10.99 -0.08 8.07 16 10 O -0.51 -10.15 13.45 -14.36 -0.19 -10.34 16 11 N -0.70 -10.57 5.15 -45.91 -0.24 -10.81 16 12 C 0.16 2.82 0.80 -129.98 -0.10 2.72 16 13 C -0.15 -2.36 8.41 37.16 0.31 -2.05 16 14 C -0.15 -2.57 6.11 -24.32 -0.15 -2.72 16 15 C 0.15 3.55 5.88 -2.27 -0.01 3.53 16 16 N -0.60 -15.55 3.40 -169.77 -0.58 -16.13 16 17 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 20 N -0.93 -26.63 10.09 55.49 0.56 -26.07 16 21 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 25 C 0.14 3.03 6.16 -3.06 -0.02 3.01 16 26 C -0.17 -1.74 9.03 -39.45 -0.36 -2.10 16 27 C -0.17 -1.56 9.03 -39.45 -0.36 -1.92 16 28 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.09 0.95 7.67 -51.93 -0.40 0.55 16 34 H 0.09 0.77 7.65 -51.93 -0.40 0.37 16 35 H 0.40 4.83 8.48 -40.82 -0.35 4.49 16 36 H 0.07 1.27 6.21 -51.93 -0.32 0.94 16 37 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.92 8.06 -51.93 -0.42 0.50 16 40 H 0.08 1.35 8.05 -51.93 -0.42 0.94 16 41 H 0.11 2.84 5.87 -51.93 -0.31 2.54 16 42 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.03 0.72 7.80 -51.93 -0.41 0.31 16 45 H 0.03 0.80 6.68 -51.93 -0.35 0.45 16 46 H 0.13 1.06 6.29 -52.49 -0.33 0.73 16 47 H 0.13 0.90 6.29 -52.48 -0.33 0.57 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -34.44 378.96 -8.39 -42.83 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.89 Total: 3.21 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.15 Total: 2.04 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.25 Total: -53.01 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.78 Total: -18.03 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.44 -8.39 -42.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699822641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.424 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds