Wall clock time and date at job start Tue Mar 31 2020 20:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35982 * 117.00225 * 2 1 4 4 C 1.38701 * 119.99930 * 180.02562 * 3 2 1 5 5 C 1.38127 * 119.99785 * 179.97438 * 4 3 2 6 6 C 1.38705 * 120.00073 * 0.02693 * 5 4 3 7 7 O 1.35986 * 119.99695 * 179.70526 * 6 5 4 8 8 C 1.42899 * 116.99848 * 179.97438 * 7 6 5 9 9 C 1.50695 * 109.47216 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99965 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00022 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00073 * 179.97438 * 11 9 8 13 13 C 1.52999 * 110.64449 * 300.70669 * 12 11 9 14 14 C 1.55161 * 110.72333 * 177.55758 * 12 11 9 15 15 C 1.55385 * 101.36943 * 277.04992 * 14 12 11 16 16 N 1.47423 * 104.87036 * 323.01225 * 15 14 12 17 17 C 1.36938 * 125.64925 * 204.09399 * 16 15 14 18 18 H 1.07998 * 120.00551 * 180.02562 * 17 16 15 19 19 C 1.38816 * 119.99861 * 0.04723 * 17 16 15 20 20 N 1.31621 * 119.99897 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99951 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47299 * 60.00103 * 21 19 17 23 23 H 1.48505 * 109.47016 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47505 * 299.99926 * 21 19 17 25 25 C 1.47025 * 108.70632 * 24.13824 * 16 15 14 26 26 C 1.38695 * 119.99786 * 359.97304 * 6 5 4 27 27 C 1.38128 * 120.00139 * 0.04612 * 26 6 5 28 28 H 1.09001 * 109.46663 * 300.00063 * 1 2 3 29 29 H 1.08995 * 109.47194 * 59.99542 * 1 2 3 30 30 H 1.08997 * 109.47489 * 179.97438 * 1 2 3 31 31 H 1.07992 * 119.99809 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.00344 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.47068 * 300.00029 * 8 7 6 34 34 H 1.09005 * 109.47117 * 59.99257 * 8 7 6 35 35 H 0.97005 * 119.99947 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47331 * 59.29402 * 13 12 11 37 37 H 1.09004 * 109.47122 * 179.29971 * 13 12 11 38 38 H 1.08994 * 109.46921 * 299.29554 * 13 12 11 39 39 H 1.09005 * 110.99766 * 35.21912 * 14 12 11 40 40 H 1.09000 * 111.00594 * 159.06691 * 14 12 11 41 41 H 1.08991 * 110.34211 * 204.16631 * 15 14 12 42 42 H 1.09003 * 110.35066 * 81.86490 * 15 14 12 43 43 H 0.96997 * 119.99789 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.87716 * 239.52541 * 25 16 15 45 45 H 1.08997 * 109.88941 * 118.35593 * 25 16 15 46 46 H 1.08002 * 119.99461 * 179.97438 * 26 6 5 47 47 H 1.08005 * 119.99887 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4315 1.2841 -0.0005 5 6 4.0586 2.5148 -0.0011 6 6 3.3032 3.6781 -0.0005 7 8 3.9207 4.8897 0.0050 8 6 3.0808 6.0458 0.0047 9 6 3.9350 7.2873 0.0119 10 8 5.1440 7.1914 0.0163 11 7 3.3554 8.5041 0.0123 12 6 4.1858 9.7109 0.0199 13 6 5.0877 9.7375 1.2555 14 6 3.3029 10.9853 -0.0429 15 6 3.0358 11.0980 -1.5695 16 7 4.2950 10.6713 -2.2064 17 6 4.7139 11.0238 -3.4616 18 1 5.6568 10.6567 -3.8392 19 6 3.9269 11.8536 -4.2484 20 7 2.7778 12.3009 -3.7883 21 14 4.4988 12.3351 -5.9603 22 1 4.6700 11.1134 -6.7870 23 1 3.4859 13.2202 -6.5898 24 1 5.7945 13.0541 -5.8654 25 6 5.0260 9.8036 -1.2714 26 6 1.9182 3.6055 0.0000 27 6 1.2911 2.3748 0.0010 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0196 0.3784 -0.0014 32 1 5.1372 2.5714 -0.0019 33 1 2.4550 6.0401 -0.8878 34 1 2.4479 6.0354 0.8922 35 1 2.3884 8.5807 0.0084 36 1 5.7287 8.8559 1.2565 37 1 5.7050 10.6356 1.2355 38 1 4.4718 9.7399 2.1548 39 1 2.3742 10.8447 0.5103 40 1 3.8466 11.8558 0.3242 41 1 2.8048 12.1285 -1.8386 42 1 2.2199 10.4367 -1.8613 43 1 2.2280 12.8810 -4.3380 44 1 6.0011 10.2370 -1.0488 45 1 5.1493 8.8114 -1.7054 46 1 1.3300 4.5113 0.0009 47 1 0.2125 2.3183 0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699822641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:23 Heat of formation + Delta-G solvation = -68.144946 kcal Electronic energy + Delta-G solvation = -28461.207998 eV Core-core repulsion = 24417.225188 eV Total energy + Delta-G solvation = -4043.982810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.65709 -41.10810 -39.95619 -38.75728 -37.21101 -35.74387 -33.77429 -32.26088 -31.93963 -30.71292 -30.30974 -28.82593 -27.87461 -27.55332 -25.42587 -23.92351 -22.96810 -22.34753 -21.87208 -20.52178 -19.50602 -19.05429 -18.66321 -18.21596 -17.36092 -17.22016 -17.02436 -16.67180 -16.57742 -15.81527 -15.71315 -15.58558 -15.44156 -14.94341 -14.67471 -14.34486 -14.28964 -14.06891 -14.01397 -13.70648 -13.46118 -13.39035 -13.31240 -13.12812 -12.84203 -12.76673 -12.63517 -12.46419 -12.10916 -12.04708 -11.98032 -11.72882 -11.68738 -11.51492 -11.41027 -10.75330 -10.66069 -10.09853 -10.07411 -8.89268 -8.75759 -7.79680 -5.22920 0.24424 0.43447 1.44646 1.47155 1.51141 1.53897 1.61148 2.40999 2.47582 2.69973 2.71624 3.29256 3.50447 3.68427 3.70537 3.81980 3.84862 3.99532 4.02023 4.11068 4.18396 4.18718 4.32604 4.43341 4.47094 4.51323 4.62807 4.67844 4.76737 4.79750 4.85442 4.89206 4.90516 5.01385 5.02709 5.09834 5.26043 5.30492 5.33248 5.41936 5.55268 5.60473 5.66699 5.80589 6.25119 6.31187 6.48541 6.59237 7.10751 7.23976 7.76522 8.39657 9.21276 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.002315 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.880587 B =12093.288944 C =12927.523300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.079 3.921 4 C -0.118 4.118 5 C -0.123 4.123 6 C 0.075 3.925 7 O -0.318 6.318 8 C 0.046 3.954 9 C 0.511 3.489 10 O -0.561 6.561 11 N -0.697 5.697 12 C 0.172 3.828 13 C -0.143 4.143 14 C -0.126 4.126 15 C 0.154 3.846 16 N -0.623 5.623 17 C -0.244 4.244 18 H 0.067 0.933 19 C -0.059 4.059 20 N -0.942 5.942 21 Si 0.977 3.023 22 H -0.284 1.284 23 H -0.287 1.287 24 H -0.279 1.279 25 C 0.134 3.866 26 C -0.170 4.170 27 C -0.167 4.167 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.150 0.850 32 H 0.139 0.861 33 H 0.109 0.891 34 H 0.129 0.871 35 H 0.415 0.585 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.076 0.924 42 H -0.003 1.003 43 H 0.249 0.751 44 H 0.020 0.980 45 H 0.006 0.994 46 H 0.155 0.845 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.245 -19.412 13.598 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.034 3.966 4 C -0.137 4.137 5 C -0.141 4.141 6 C 0.030 3.970 7 O -0.232 6.232 8 C -0.032 4.032 9 C 0.297 3.703 10 O -0.439 6.439 11 N -0.350 5.350 12 C 0.086 3.914 13 C -0.201 4.201 14 C -0.164 4.164 15 C 0.029 3.971 16 N -0.349 5.349 17 C -0.373 4.373 18 H 0.085 0.915 19 C -0.252 4.252 20 N -0.592 5.592 21 Si 0.805 3.195 22 H -0.210 1.210 23 H -0.212 1.212 24 H -0.205 1.205 25 C 0.008 3.992 26 C -0.188 4.188 27 C -0.185 4.185 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.168 0.832 32 H 0.157 0.843 33 H 0.127 0.873 34 H 0.147 0.853 35 H 0.252 0.748 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.015 0.985 43 H 0.059 0.941 44 H 0.038 0.962 45 H 0.024 0.976 46 H 0.173 0.827 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.167 -19.507 13.429 25.051 hybrid contribution -0.275 0.542 -1.382 1.510 sum -8.442 -18.966 12.047 24.002 Atomic orbital electron populations 1.23327 0.76619 1.05513 1.02203 1.86055 1.23276 1.26456 1.89206 1.19105 0.92514 0.84950 1.00001 1.20403 0.91933 0.97881 1.03461 1.20418 1.00801 0.89302 1.03602 1.19192 0.92097 0.84880 1.00821 1.86131 1.35486 1.12082 1.89453 1.22574 0.92423 0.82030 1.06183 1.20543 0.88660 0.85137 0.75912 1.90697 1.16261 1.87226 1.49677 1.45702 1.10860 1.03983 1.74490 1.21160 0.91520 0.84711 0.94047 1.21981 0.99529 1.02646 0.95950 1.23297 1.00165 0.95414 0.97561 1.21874 0.86233 1.00453 0.88541 1.44770 1.20881 1.55621 1.13656 1.19317 1.03023 1.24080 0.90896 0.91463 1.25527 0.97075 1.00375 1.02260 1.69990 1.13258 1.38756 1.37166 0.85178 0.77209 0.77604 0.79473 1.20997 1.21239 1.20477 1.21696 0.94474 0.92546 0.90478 1.21343 0.92538 0.99879 1.05087 1.21319 1.01347 0.90973 1.04878 0.91606 0.91917 0.86480 0.83247 0.84340 0.87314 0.85339 0.74774 0.92533 0.91342 0.89985 0.87511 0.89842 0.90592 0.98513 0.94096 0.96211 0.97609 0.82714 0.82575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.78 10.50 -93.35 -0.98 -6.76 16 3 C 0.08 1.50 6.69 22.49 0.15 1.65 16 4 C -0.12 -2.34 9.98 22.35 0.22 -2.12 16 5 C -0.12 -2.76 9.98 22.36 0.22 -2.54 16 6 C 0.07 1.77 6.69 22.49 0.15 1.92 16 7 O -0.32 -8.94 9.67 -74.35 -0.72 -9.66 16 8 C 0.05 1.01 5.22 71.23 0.37 1.38 16 9 C 0.51 15.70 7.12 87.66 0.62 16.33 16 10 O -0.56 -22.59 13.45 16.00 0.22 -22.37 16 11 N -0.70 -19.65 5.15 -417.56 -2.15 -21.80 16 12 C 0.17 5.80 0.80 4.79 0.00 5.81 16 13 C -0.14 -4.19 8.41 71.98 0.61 -3.59 16 14 C -0.13 -4.13 6.11 32.16 0.20 -3.93 16 15 C 0.15 7.13 5.88 87.02 0.51 7.64 16 16 N -0.62 -32.82 3.40 -691.03 -2.35 -35.16 16 17 C -0.24 -14.21 10.27 84.03 0.86 -13.35 16 18 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 19 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 20 N -0.94 -54.91 10.09 21.65 0.22 -54.69 16 21 Si 0.98 46.28 29.55 68.60 2.03 48.30 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 C 0.13 6.14 6.16 86.73 0.53 6.67 16 26 C -0.17 -3.07 9.03 22.35 0.20 -2.86 16 27 C -0.17 -2.71 9.03 22.35 0.20 -2.51 16 28 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 29 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 30 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.11 2.00 7.67 -2.39 -0.02 1.98 16 34 H 0.13 1.76 7.65 -2.38 -0.02 1.74 16 35 H 0.42 8.83 8.48 -92.70 -0.79 8.04 16 36 H 0.06 1.90 6.21 -2.39 -0.01 1.88 16 37 H 0.07 1.95 8.12 -2.39 -0.02 1.94 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.11 2.63 8.06 -2.38 -0.02 2.61 16 40 H 0.08 2.70 8.05 -2.39 -0.02 2.68 16 41 H 0.08 4.05 5.87 -2.39 -0.01 4.04 16 42 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 44 H 0.02 0.94 7.80 -2.39 -0.02 0.92 16 45 H 0.01 0.30 6.68 -2.39 -0.02 0.28 16 46 H 0.16 1.94 6.29 -2.91 -0.02 1.92 16 47 H 0.16 1.62 6.29 -2.91 -0.02 1.60 16 Total: -1.00 -78.19 378.96 2.91 -75.28 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.21 Total: 18.01 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 6.44 Total: 8.84 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -4.28 Total: -111.66 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -1.48 Total: -38.79 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -78.19 2.91 -75.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699822641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.137 kcal (2) G-P(sol) polarization free energy of solvation -78.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds