Wall clock time and date at job start Tue Mar 31 2020 20:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.87003 * 2 1 4 4 C 1.54109 * 109.87630 * 238.83987 * 2 1 3 5 5 C 1.54809 * 104.18614 * 242.60461 * 4 2 1 6 6 H 1.09001 * 110.90797 * 262.68213 * 5 4 2 7 7 N 1.46498 * 110.93636 * 139.09175 * 5 4 2 8 8 C 1.34774 * 120.00260 * 157.94795 * 7 5 4 9 9 O 1.21596 * 119.99921 * 0.02562 * 8 7 5 10 10 N 1.34776 * 120.00683 * 180.02562 * 8 7 5 11 11 C 1.46493 * 120.00370 * 179.97438 * 10 8 7 12 12 C 1.50707 * 109.47285 * 179.97438 * 11 10 8 13 13 C 1.38328 * 119.96288 * 269.72937 * 12 11 10 14 14 C 1.38279 * 120.13472 * 179.76330 * 13 12 11 15 15 C 1.38122 * 120.06837 * 0.51010 * 14 13 12 16 16 C 1.38858 * 119.93102 * 359.74335 * 15 14 13 17 17 O 1.35751 * 120.06586 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00318 * 354.44017 * 17 16 15 19 19 H 1.08000 * 119.99663 * 5.06090 * 18 17 16 20 20 C 1.38659 * 120.00075 * 185.05661 * 18 17 16 21 21 N 1.31558 * 119.99556 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00133 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46844 * 59.99870 * 22 20 18 24 24 H 1.48500 * 109.47167 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46980 * 300.00676 * 22 20 18 26 26 C 1.38070 * 119.96547 * 89.99760 * 12 11 10 27 27 C 1.55001 * 102.09433 * 20.88434 * 5 4 2 28 28 O 1.43746 * 109.88081 * 121.01268 * 2 1 3 29 29 H 1.09002 * 109.46818 * 300.44041 * 1 2 3 30 30 H 1.09001 * 109.47660 * 60.44476 * 1 2 3 31 31 H 1.09002 * 109.47314 * 180.44949 * 1 2 3 32 32 H 1.09001 * 109.47269 * 179.55708 * 3 2 1 33 33 H 1.09005 * 109.47380 * 299.55667 * 3 2 1 34 34 H 1.08995 * 109.46962 * 59.55465 * 3 2 1 35 35 H 1.08994 * 110.48601 * 123.92865 * 4 2 1 36 36 H 1.09000 * 110.48358 * 1.28231 * 4 2 1 37 37 H 0.97006 * 120.00328 * 337.95067 * 7 5 4 38 38 H 0.97007 * 119.99341 * 0.02562 * 10 8 7 39 39 H 1.08996 * 109.47448 * 299.99619 * 11 10 8 40 40 H 1.08996 * 109.47087 * 60.00405 * 11 10 8 41 41 H 1.07993 * 119.93036 * 359.97438 * 13 12 11 42 42 H 1.07996 * 119.96847 * 180.22794 * 14 13 12 43 43 H 1.08001 * 120.03328 * 179.72549 * 15 14 13 44 44 H 0.96999 * 119.99496 * 180.02562 * 21 20 18 45 45 H 1.08006 * 120.03374 * 359.96222 * 26 12 11 46 46 H 1.08993 * 110.61993 * 81.47367 * 27 5 4 47 47 H 1.09000 * 110.61624 * 204.47708 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4388 0.0000 4 6 2.0540 -0.7499 -1.2402 5 6 2.8324 -1.9533 -0.6551 6 1 3.9003 -1.7399 -0.6077 7 7 2.5787 -3.1688 -1.4325 8 6 3.4567 -4.1905 -1.3916 9 8 4.4593 -4.1035 -0.7091 10 7 3.2237 -5.3086 -2.1072 11 6 4.1784 -6.4188 -2.0632 12 6 3.6871 -7.5391 -2.9434 13 6 2.8754 -8.5271 -2.4157 14 6 2.4186 -9.5540 -3.2212 15 6 2.7803 -9.6018 -4.5533 16 6 3.5992 -8.6144 -5.0848 17 8 3.9560 -8.6584 -6.3938 18 6 3.5779 -9.7461 -7.0951 19 1 2.9481 -10.4931 -6.6351 20 6 3.9977 -9.9055 -8.4070 21 7 4.7653 -8.9957 -8.9672 22 14 3.4745 -11.4128 -9.3784 23 1 1.9927 -11.4539 -9.4683 24 1 4.0521 -11.3462 -10.7448 25 1 3.9629 -12.6368 -8.6940 26 6 4.0521 -7.5812 -4.2743 27 6 2.2280 -2.0704 0.7674 28 8 2.0188 -0.6965 1.1586 29 1 -0.3633 0.5207 0.8860 30 1 -0.3634 0.5069 -0.8939 31 1 -0.3634 -1.0276 0.0081 32 1 3.1400 1.4313 0.0079 33 1 1.6968 1.9529 -0.8940 34 1 1.6838 1.9575 0.8859 35 1 2.7196 -0.1103 -1.8197 36 1 1.2236 -1.0955 -1.8560 37 1 1.7787 -3.2384 -1.9767 38 1 2.4240 -5.3778 -2.6520 39 1 5.1503 -6.0766 -2.4187 40 1 4.2720 -6.7771 -1.0381 41 1 2.5952 -8.4945 -1.3732 42 1 1.7820 -10.3220 -2.8072 43 1 2.4268 -10.4066 -5.1809 44 1 5.0586 -9.1071 -9.8850 45 1 4.6889 -6.8115 -4.6848 46 1 1.2813 -2.6098 0.7390 47 1 2.9295 -2.5594 1.4434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771965544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:32 Heat of formation + Delta-G solvation = -82.125896 kcal Electronic energy + Delta-G solvation = -27669.598301 eV Core-core repulsion = 23625.009232 eV Total energy + Delta-G solvation = -4044.589069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.69006 -39.62252 -39.03074 -36.88313 -34.98148 -34.43592 -33.49071 -32.36443 -31.17952 -29.86223 -29.05638 -27.81891 -26.22827 -25.88360 -25.06826 -22.17417 -21.71978 -21.02162 -20.82694 -20.40902 -18.78623 -17.68035 -17.12821 -16.77588 -16.16335 -15.77713 -15.59591 -15.25111 -15.04744 -14.72153 -14.50932 -14.33078 -14.19325 -13.91564 -13.63990 -13.57139 -13.40128 -13.11225 -12.77436 -12.60408 -12.41998 -12.26931 -12.21682 -12.04544 -11.77298 -11.68272 -11.40988 -11.39469 -11.00257 -10.94785 -10.84909 -10.73633 -10.51829 -10.26293 -10.08715 -9.44331 -9.35131 -8.91568 -8.84909 -8.28442 -7.35952 -6.51573 -4.11244 1.82319 2.23485 2.67970 3.08401 3.09911 3.12700 3.14336 3.54895 3.90351 4.04895 4.22787 4.34587 4.41675 4.53140 4.66468 4.75020 4.85873 4.90762 5.04303 5.15452 5.19692 5.25295 5.28987 5.36028 5.44233 5.47996 5.51146 5.58165 5.63900 5.74123 5.75950 5.82473 5.86244 5.90399 6.04571 6.22256 6.23500 6.49727 6.52640 6.63365 6.78853 6.83101 6.97210 7.16195 7.24580 7.32853 7.67881 7.92272 7.95293 8.54638 8.93591 9.62014 10.66025 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020493 B = 0.001869 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.979656 B =14980.348963 C =15560.967666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.097 3.903 3 C -0.144 4.144 4 C -0.155 4.155 5 C 0.135 3.865 6 H 0.106 0.894 7 N -0.739 5.739 8 C 0.704 3.296 9 O -0.592 6.592 10 N -0.735 5.735 11 C 0.187 3.813 12 C -0.073 4.073 13 C -0.194 4.194 14 C -0.077 4.077 15 C -0.225 4.225 16 C 0.149 3.851 17 O -0.176 6.176 18 C -0.394 4.394 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.170 4.170 27 C 0.036 3.964 28 O -0.364 6.364 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.398 0.602 38 H 0.399 0.601 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.128 0.872 44 H 0.271 0.729 45 H 0.118 0.882 46 H 0.062 0.938 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.029 14.549 14.719 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.058 3.942 3 C -0.202 4.202 4 C -0.193 4.193 5 C 0.029 3.971 6 H 0.124 0.876 7 N -0.396 5.396 8 C 0.404 3.596 9 O -0.470 6.470 10 N -0.389 5.389 11 C 0.063 3.937 12 C -0.074 4.074 13 C -0.214 4.214 14 C -0.095 4.095 15 C -0.245 4.245 16 C 0.096 3.904 17 O -0.079 6.079 18 C -0.470 4.470 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.190 4.190 27 C -0.042 4.042 28 O -0.283 6.283 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.232 0.768 38 H 0.233 0.767 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.080 0.920 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.786 14.918 15.173 22.658 hybrid contribution -1.175 -1.125 -1.282 2.071 sum -8.961 13.794 13.892 21.530 Atomic orbital electron populations 1.22269 0.94651 1.02542 1.02643 1.22078 0.93814 0.93383 0.84965 1.21912 1.01965 0.93743 1.02531 1.23308 1.00862 0.96976 0.98160 1.22291 1.01574 0.82992 0.90258 0.87602 1.45023 1.26157 1.16189 1.52231 1.15958 0.83062 0.80086 0.80523 1.90930 1.28539 1.81629 1.45925 1.45263 1.27387 1.15741 1.50531 1.20011 0.91448 0.83350 0.98854 1.19272 0.99012 0.95907 0.93199 1.20485 1.04281 0.97490 0.99126 1.20749 0.98192 0.97169 0.93376 1.21243 1.04721 1.02332 0.96202 1.19330 0.92357 0.93264 0.85488 1.83981 1.67621 1.41076 1.15232 1.21275 1.31950 0.99037 0.94742 0.89085 1.25302 0.96089 0.98905 0.96183 1.70028 1.31911 1.33503 1.14083 0.85774 0.78976 0.80035 0.78619 1.19489 1.20236 1.19459 1.20094 1.05986 1.00469 0.92434 1.23988 1.00258 0.83924 0.96050 1.88953 1.85987 1.20569 1.32763 0.91737 0.91453 0.92250 0.91661 0.91188 0.91768 0.89318 0.89767 0.76811 0.76694 0.90962 0.91051 0.87490 0.87289 0.85474 0.91881 0.86382 0.91958 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 8.60 37.16 0.32 -0.70 16 2 C 0.10 0.72 1.19 -90.04 -0.11 0.62 16 3 C -0.14 -0.91 8.68 37.15 0.32 -0.59 16 4 C -0.15 -1.06 6.02 -25.20 -0.15 -1.21 16 5 C 0.14 1.26 3.45 -65.92 -0.23 1.03 16 6 H 0.11 1.19 7.63 -51.93 -0.40 0.80 16 7 N -0.74 -7.04 5.21 -56.71 -0.30 -7.34 16 8 C 0.70 9.35 8.57 -86.92 -0.74 8.60 16 9 O -0.59 -10.15 16.03 5.28 0.08 -10.06 16 10 N -0.73 -9.25 5.55 -66.42 -0.37 -9.62 16 11 C 0.19 2.69 5.80 -5.19 -0.03 2.66 16 12 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 13 C -0.19 -3.09 9.70 -39.53 -0.38 -3.48 16 14 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 15 C -0.23 -4.62 9.17 -39.39 -0.36 -4.98 16 16 C 0.15 3.43 6.65 -39.11 -0.26 3.17 16 17 O -0.18 -4.84 9.76 0.05 0.00 -4.84 16 18 C -0.39 -10.67 9.49 30.89 0.29 -10.38 16 19 H 0.09 2.26 5.20 -52.49 -0.27 1.99 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -24.71 13.67 55.48 0.76 -23.95 16 22 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 C -0.17 -3.37 9.65 -39.40 -0.38 -3.75 16 27 C 0.04 0.34 7.36 38.21 0.28 0.63 16 28 O -0.36 -3.68 10.86 -35.23 -0.38 -4.07 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.05 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.56 7.70 -51.93 -0.40 0.16 16 36 H 0.08 0.46 7.30 -51.93 -0.38 0.08 16 37 H 0.40 2.75 8.39 -40.82 -0.34 2.41 16 38 H 0.40 4.36 8.48 -40.82 -0.35 4.01 16 39 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 43 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 44 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 46 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 47 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -32.23 391.14 -8.86 -41.09 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -7.06 Total: 8.79 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -2.47 Total: -10.86 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.09 Total: -40.91 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.30 Total: -18.97 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.23 -8.86 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771965544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.033 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds