Wall clock time and date at job start Tue Mar 31 2020 20:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.87003 * 2 1 4 4 C 1.54109 * 109.87630 * 238.83987 * 2 1 3 5 5 C 1.54809 * 104.18614 * 242.60461 * 4 2 1 6 6 H 1.09001 * 110.90797 * 262.68213 * 5 4 2 7 7 N 1.46498 * 110.93636 * 139.09175 * 5 4 2 8 8 C 1.34774 * 120.00260 * 157.94795 * 7 5 4 9 9 O 1.21596 * 119.99921 * 0.02562 * 8 7 5 10 10 N 1.34776 * 120.00683 * 180.02562 * 8 7 5 11 11 C 1.46493 * 120.00370 * 179.97438 * 10 8 7 12 12 C 1.50707 * 109.47285 * 179.97438 * 11 10 8 13 13 C 1.38328 * 119.96288 * 269.72937 * 12 11 10 14 14 C 1.38279 * 120.13472 * 179.76330 * 13 12 11 15 15 C 1.38122 * 120.06837 * 0.51010 * 14 13 12 16 16 C 1.38858 * 119.93102 * 359.74335 * 15 14 13 17 17 O 1.35751 * 120.06586 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00318 * 354.44017 * 17 16 15 19 19 H 1.08000 * 119.99663 * 5.06090 * 18 17 16 20 20 C 1.38659 * 120.00075 * 185.05661 * 18 17 16 21 21 N 1.31558 * 119.99556 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00133 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46844 * 59.99870 * 22 20 18 24 24 H 1.48500 * 109.47167 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46980 * 300.00676 * 22 20 18 26 26 C 1.38070 * 119.96547 * 89.99760 * 12 11 10 27 27 C 1.55001 * 102.09433 * 20.88434 * 5 4 2 28 28 O 1.43746 * 109.88081 * 121.01268 * 2 1 3 29 29 H 1.09002 * 109.46818 * 300.44041 * 1 2 3 30 30 H 1.09001 * 109.47660 * 60.44476 * 1 2 3 31 31 H 1.09002 * 109.47314 * 180.44949 * 1 2 3 32 32 H 1.09001 * 109.47269 * 179.55708 * 3 2 1 33 33 H 1.09005 * 109.47380 * 299.55667 * 3 2 1 34 34 H 1.08995 * 109.46962 * 59.55465 * 3 2 1 35 35 H 1.08994 * 110.48601 * 123.92865 * 4 2 1 36 36 H 1.09000 * 110.48358 * 1.28231 * 4 2 1 37 37 H 0.97006 * 120.00328 * 337.95067 * 7 5 4 38 38 H 0.97007 * 119.99341 * 0.02562 * 10 8 7 39 39 H 1.08996 * 109.47448 * 299.99619 * 11 10 8 40 40 H 1.08996 * 109.47087 * 60.00405 * 11 10 8 41 41 H 1.07993 * 119.93036 * 359.97438 * 13 12 11 42 42 H 1.07996 * 119.96847 * 180.22794 * 14 13 12 43 43 H 1.08001 * 120.03328 * 179.72549 * 15 14 13 44 44 H 0.96999 * 119.99496 * 180.02562 * 21 20 18 45 45 H 1.08006 * 120.03374 * 359.96222 * 26 12 11 46 46 H 1.08993 * 110.61993 * 81.47367 * 27 5 4 47 47 H 1.09000 * 110.61624 * 204.47708 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4388 0.0000 4 6 2.0540 -0.7499 -1.2402 5 6 2.8324 -1.9533 -0.6551 6 1 3.9003 -1.7399 -0.6077 7 7 2.5787 -3.1688 -1.4325 8 6 3.4567 -4.1905 -1.3916 9 8 4.4593 -4.1035 -0.7091 10 7 3.2237 -5.3086 -2.1072 11 6 4.1784 -6.4188 -2.0632 12 6 3.6871 -7.5391 -2.9434 13 6 2.8754 -8.5271 -2.4157 14 6 2.4186 -9.5540 -3.2212 15 6 2.7803 -9.6018 -4.5533 16 6 3.5992 -8.6144 -5.0848 17 8 3.9560 -8.6584 -6.3938 18 6 3.5779 -9.7461 -7.0951 19 1 2.9481 -10.4931 -6.6351 20 6 3.9977 -9.9055 -8.4070 21 7 4.7653 -8.9957 -8.9672 22 14 3.4745 -11.4128 -9.3784 23 1 1.9927 -11.4539 -9.4683 24 1 4.0521 -11.3462 -10.7448 25 1 3.9629 -12.6368 -8.6940 26 6 4.0521 -7.5812 -4.2743 27 6 2.2280 -2.0704 0.7674 28 8 2.0188 -0.6965 1.1586 29 1 -0.3633 0.5207 0.8860 30 1 -0.3634 0.5069 -0.8939 31 1 -0.3634 -1.0276 0.0081 32 1 3.1400 1.4313 0.0079 33 1 1.6968 1.9529 -0.8940 34 1 1.6838 1.9575 0.8859 35 1 2.7196 -0.1103 -1.8197 36 1 1.2236 -1.0955 -1.8560 37 1 1.7787 -3.2384 -1.9767 38 1 2.4240 -5.3778 -2.6520 39 1 5.1503 -6.0766 -2.4187 40 1 4.2720 -6.7771 -1.0381 41 1 2.5952 -8.4945 -1.3732 42 1 1.7820 -10.3220 -2.8072 43 1 2.4268 -10.4066 -5.1809 44 1 5.0586 -9.1071 -9.8850 45 1 4.6889 -6.8115 -4.6848 46 1 1.2813 -2.6098 0.7390 47 1 2.9295 -2.5594 1.4434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771965544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:31 Heat of formation + Delta-G solvation = -104.690566 kcal Electronic energy + Delta-G solvation = -27670.576779 eV Core-core repulsion = 23625.009232 eV Total energy + Delta-G solvation = -4045.567547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.54736 -40.87377 -40.32436 -38.48961 -35.96670 -35.62767 -34.28167 -34.09649 -32.42312 -31.01718 -30.44541 -28.29848 -27.54588 -26.86958 -26.61967 -23.30549 -23.04308 -22.33677 -21.92483 -21.05018 -19.97541 -19.31734 -18.71553 -17.73740 -16.94097 -16.81797 -16.65275 -16.55046 -16.18863 -16.10200 -15.97099 -15.51228 -15.37702 -15.16934 -14.87536 -14.53197 -14.32955 -14.10423 -13.91552 -13.78117 -13.64101 -13.37846 -13.10662 -13.00291 -12.83640 -12.57415 -12.51903 -12.45463 -12.37494 -12.26547 -12.14305 -12.02080 -11.60608 -11.44113 -11.20379 -10.79896 -10.77169 -10.37477 -9.82967 -9.76128 -9.02998 -8.46578 -6.15081 0.36767 0.71093 1.35987 1.45868 1.51974 1.68254 2.08536 2.17870 2.77309 2.89652 3.13455 3.32161 3.42456 3.49248 3.73916 3.83719 3.85846 4.03719 4.08956 4.10542 4.23690 4.31896 4.43741 4.53822 4.58046 4.66016 4.69686 4.73656 4.74501 4.78685 4.86678 4.92037 4.96833 5.02043 5.02704 5.12040 5.26458 5.28195 5.36682 5.39451 5.44207 5.62891 5.71322 5.72628 5.93537 5.98708 6.02176 6.17558 6.98138 7.02718 7.52081 7.78522 8.76185 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020493 B = 0.001869 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.979656 B =14980.348963 C =15560.967666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.090 3.910 3 C -0.145 4.145 4 C -0.146 4.146 5 C 0.134 3.866 6 H 0.082 0.918 7 N -0.721 5.721 8 C 0.703 3.297 9 O -0.632 6.632 10 N -0.727 5.727 11 C 0.193 3.807 12 C -0.057 4.057 13 C -0.167 4.167 14 C -0.070 4.070 15 C -0.234 4.234 16 C 0.111 3.889 17 O -0.232 6.232 18 C -0.413 4.413 19 H 0.104 0.896 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.180 4.180 27 C 0.040 3.960 28 O -0.385 6.385 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.414 0.586 38 H 0.409 0.591 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.121 0.879 44 H 0.272 0.728 45 H 0.107 0.893 46 H 0.073 0.927 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.588 14.187 16.465 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 C -0.202 4.202 4 C -0.184 4.184 5 C 0.027 3.973 6 H 0.100 0.900 7 N -0.378 5.378 8 C 0.403 3.597 9 O -0.514 6.514 10 N -0.383 5.383 11 C 0.070 3.930 12 C -0.058 4.058 13 C -0.186 4.186 14 C -0.088 4.088 15 C -0.253 4.253 16 C 0.061 3.939 17 O -0.139 6.139 18 C -0.489 4.489 19 H 0.121 0.879 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.200 4.200 27 C -0.038 4.038 28 O -0.304 6.304 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.251 0.749 38 H 0.245 0.755 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.166 0.834 42 H 0.166 0.834 43 H 0.138 0.862 44 H 0.081 0.919 45 H 0.125 0.875 46 H 0.092 0.908 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.412 14.579 16.963 24.672 hybrid contribution -0.434 -0.867 -1.443 1.738 sum -10.846 13.712 15.520 23.378 Atomic orbital electron populations 1.22257 0.93452 1.02753 1.03368 1.22316 0.94763 0.93634 0.84245 1.21946 1.01496 0.93314 1.03427 1.23298 1.01240 0.95696 0.98120 1.22261 1.00696 0.83653 0.90649 0.89988 1.44841 1.25925 1.15235 1.51819 1.16069 0.82974 0.80590 0.80097 1.90911 1.30425 1.82385 1.47650 1.45041 1.27368 1.15239 1.50620 1.19863 0.91246 0.83170 0.98762 1.19426 0.98041 0.96631 0.91717 1.20998 1.01337 0.95485 1.00754 1.21163 0.97763 0.98169 0.91684 1.21377 1.04495 1.01546 0.97904 1.19866 0.93977 0.95256 0.84813 1.83947 1.70248 1.42163 1.17506 1.21780 1.32219 0.99487 0.95376 0.87898 1.26586 0.96062 1.02346 0.97144 1.70182 1.34730 1.36341 1.14618 0.84658 0.79157 0.75755 0.76739 1.17981 1.19888 1.18254 1.20222 1.06248 0.99758 0.93748 1.23896 1.00305 0.84029 0.95618 1.88937 1.86368 1.20808 1.34300 0.92159 0.89645 0.92258 0.92451 0.89206 0.92004 0.88612 0.87742 0.74904 0.75471 0.92204 0.89716 0.83418 0.83363 0.86168 0.91900 0.87485 0.90849 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 8.60 71.98 0.62 -0.99 16 2 C 0.09 1.17 1.19 -10.42 -0.01 1.16 16 3 C -0.14 -1.61 8.68 71.98 0.62 -0.98 16 4 C -0.15 -1.67 6.02 31.59 0.19 -1.48 16 5 C 0.13 2.34 3.45 46.29 0.16 2.50 16 6 H 0.08 1.86 7.63 -2.39 -0.02 1.84 16 7 N -0.72 -12.38 5.21 -451.60 -2.35 -14.73 16 8 C 0.70 17.63 8.57 179.06 1.53 19.16 16 9 O -0.63 -21.36 16.03 -4.02 -0.06 -21.42 16 10 N -0.73 -16.75 5.55 -482.30 -2.68 -19.43 16 11 C 0.19 5.18 5.80 85.64 0.50 5.68 16 12 C -0.06 -1.76 5.25 -19.88 -0.10 -1.87 16 13 C -0.17 -4.57 9.70 22.30 0.22 -4.35 16 14 C -0.07 -2.13 10.04 22.25 0.22 -1.90 16 15 C -0.23 -9.42 9.17 22.39 0.21 -9.21 16 16 C 0.11 5.24 6.65 22.58 0.15 5.39 16 17 O -0.23 -13.53 9.76 -22.73 -0.22 -13.75 16 18 C -0.41 -23.32 9.49 67.92 0.64 -22.67 16 19 H 0.10 5.27 5.20 -2.91 -0.02 5.25 16 20 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 21 N -0.92 -55.74 13.67 21.61 0.30 -55.44 16 22 Si 1.02 41.80 29.55 68.60 2.03 43.83 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 26 C -0.18 -7.21 9.65 22.39 0.22 -6.99 16 27 C 0.04 0.73 7.36 72.67 0.53 1.26 16 28 O -0.39 -7.49 10.86 -148.98 -1.62 -9.11 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 1.00 7.70 -2.39 -0.02 0.98 16 36 H 0.10 0.79 7.30 -2.39 -0.02 0.77 16 37 H 0.41 4.54 8.39 -92.70 -0.78 3.76 16 38 H 0.41 7.82 8.48 -92.70 -0.79 7.04 16 39 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 40 H 0.08 2.12 8.08 -2.39 -0.02 2.10 16 41 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 43 H 0.12 4.94 5.64 -2.91 -0.02 4.92 16 44 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 46 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 47 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -75.50 391.14 0.99 -74.51 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.56 Total: 31.71 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 6.16 Total: -16.15 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -4.74 Total: -89.60 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -1.90 Total: -44.29 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -75.50 0.99 -74.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771965544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.183 kcal (2) G-P(sol) polarization free energy of solvation -75.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds