Wall clock time and date at job start Tue Mar 31 2020 20:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38123 * 126.29638 * 2 1 4 4 C 1.47291 * 126.42624 * 359.97080 * 3 2 1 5 5 O 1.21524 * 119.99870 * 359.70857 * 4 3 2 6 6 O 1.34752 * 119.99986 * 179.71426 * 4 3 2 7 7 C 1.45204 * 116.99940 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47009 * 179.97438 * 7 6 4 9 9 C 1.54190 * 112.76081 * 299.89023 * 8 7 6 10 10 C 1.55106 * 103.71776 * 263.10728 * 9 8 7 11 11 C 1.54997 * 102.11434 * 319.43265 * 10 9 8 12 12 C 1.54448 * 104.16036 * 39.55183 * 11 10 9 13 13 H 1.09001 * 111.44399 * 98.02765 * 12 11 10 14 14 O 1.43809 * 108.48887 * 221.07120 * 12 11 10 15 15 C 1.44287 * 107.24251 * 139.99206 * 14 12 11 16 16 C 1.54979 * 103.49482 * 320.03258 * 15 14 12 17 17 C 1.41342 * 107.14958 * 179.70714 * 3 2 1 18 18 N 1.30434 * 108.00924 * 0.26345 * 17 3 2 19 19 N 1.34228 * 126.29942 * 180.15988 * 2 1 3 20 20 C 1.46507 * 125.74024 * 0.04371 * 19 2 1 21 21 C 1.50702 * 109.46981 * 270.31970 * 20 19 2 22 22 H 1.07998 * 120.00038 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99638 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00445 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99840 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47422 * 59.99452 * 25 23 21 27 27 H 1.48498 * 109.47417 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46681 * 299.99429 * 25 23 21 29 29 H 1.09000 * 109.47407 * 90.02450 * 1 2 3 30 30 H 1.09005 * 109.46620 * 210.02211 * 1 2 3 31 31 H 1.09002 * 109.46988 * 330.02024 * 1 2 3 32 32 H 1.09003 * 109.47098 * 59.99332 * 7 6 4 33 33 H 1.09009 * 109.46663 * 299.99650 * 7 6 4 34 34 H 1.09005 * 110.57397 * 144.55968 * 9 8 7 35 35 H 1.08991 * 110.57769 * 21.67053 * 9 8 7 36 36 H 1.09001 * 110.90447 * 201.22360 * 10 9 8 37 37 H 1.09009 * 110.90059 * 77.63232 * 10 9 8 38 38 H 1.09004 * 110.49311 * 158.22437 * 11 10 9 39 39 H 1.08996 * 110.49375 * 280.74663 * 11 10 9 40 40 H 1.09008 * 110.61909 * 78.53594 * 15 14 12 41 41 H 1.09006 * 110.61636 * 201.52770 * 15 14 12 42 42 H 1.09002 * 110.91303 * 155.64003 * 16 15 14 43 43 H 1.09005 * 110.90377 * 279.20987 * 16 15 14 44 44 H 1.07998 * 125.99739 * 180.26869 * 17 3 2 45 45 H 1.08996 * 109.47129 * 30.32191 * 20 19 2 46 46 H 1.09002 * 109.46584 * 150.32063 * 20 19 2 47 47 H 0.96997 * 120.00336 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5197 -0.0006 5 8 0.7018 2.7873 -0.0065 6 8 2.8014 3.5096 0.0053 7 6 2.2981 4.8717 0.0049 8 6 3.4744 5.8499 0.0127 9 6 4.3797 5.6846 1.2499 10 6 3.8686 6.7746 2.2279 11 6 3.6139 7.9715 1.2766 12 6 3.0046 7.3264 0.0125 13 1 1.9170 7.3992 0.0127 14 8 3.5737 7.9637 -1.1443 15 6 3.8169 6.9330 -2.1242 16 6 4.3471 5.7476 -1.2783 17 6 3.6598 0.6496 0.0069 18 7 3.6340 -0.6544 0.0050 19 7 2.3016 -1.0818 -0.0030 20 6 1.8498 -2.4755 -0.0078 21 6 1.6865 -2.9554 1.4114 22 1 1.8985 -2.2892 2.2345 23 6 1.2676 -4.2455 1.6588 24 7 1.0099 -5.0570 0.6564 25 14 1.0644 -4.8403 3.4179 26 1 0.0588 -3.9969 4.1127 27 1 0.6066 -6.2529 3.4131 28 1 2.3660 -4.7437 4.1264 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 1.6858 5.0330 0.8921 33 1 1.6946 5.0357 -0.8879 34 1 5.4226 5.8634 0.9881 35 1 4.2574 4.6924 1.6842 36 1 4.6301 7.0211 2.9679 37 1 2.9445 6.4597 2.7128 38 1 2.9094 8.6721 1.7250 39 1 4.5506 8.4747 1.0371 40 1 2.8915 6.6592 -2.6311 41 1 4.5684 7.2574 -2.8441 42 1 4.1721 4.7988 -1.7855 43 1 5.4054 5.8753 -1.0503 44 1 4.5460 1.2669 0.0128 45 1 0.8943 -2.5459 -0.5274 46 1 2.5875 -3.0947 -0.5182 47 1 0.7148 -5.9644 0.8305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772373909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:14 Heat of formation + Delta-G solvation = -75.704119 kcal Electronic energy + Delta-G solvation = -28935.331569 eV Core-core repulsion = 24891.020969 eV Total energy + Delta-G solvation = -4044.310600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.02698 -40.71544 -39.40274 -36.35146 -35.58778 -33.96252 -32.47264 -32.15160 -31.28564 -29.08232 -27.90758 -27.52983 -26.79314 -25.49090 -23.60683 -22.69448 -22.09360 -21.06200 -20.22103 -19.52253 -18.93646 -17.40674 -16.86790 -16.78562 -16.62590 -16.00870 -15.91123 -15.46701 -15.05639 -14.67470 -14.51962 -14.38765 -14.03613 -13.74379 -13.39804 -13.31892 -12.89665 -12.59284 -12.51747 -12.40174 -12.14287 -12.12904 -11.86676 -11.67782 -11.58162 -11.27860 -11.24749 -11.18856 -11.11076 -10.94247 -10.92020 -10.84930 -10.45019 -10.37622 -10.32185 -10.01377 -9.89818 -9.83658 -8.75387 -8.68167 -8.11349 -6.38259 -4.46867 1.87917 2.66244 2.72100 3.17111 3.21484 3.23634 3.36122 3.49473 3.63463 4.00623 4.20307 4.23454 4.44239 4.69828 4.74780 4.81426 4.85429 4.95229 4.96598 5.07470 5.10555 5.13919 5.19127 5.28483 5.35348 5.41183 5.46276 5.49351 5.61496 5.65409 5.67034 5.75874 5.77345 5.83843 5.92570 5.97075 5.99151 6.04099 6.32898 6.42397 6.61981 6.66940 6.74466 6.83642 7.09832 7.48741 7.67986 7.71380 8.14046 8.31280 8.58392 9.20513 10.69854 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.002341 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.796447 B =11959.661993 C =12248.639737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.173 3.827 3 C -0.319 4.319 4 C 0.551 3.449 5 O -0.530 6.530 6 O -0.351 6.351 7 C 0.091 3.909 8 C -0.092 4.092 9 C -0.109 4.109 10 C -0.127 4.127 11 C -0.124 4.124 12 C 0.082 3.918 13 H 0.079 0.921 14 O -0.373 6.373 15 C 0.044 3.956 16 C -0.143 4.143 17 C 0.080 3.920 18 N -0.297 5.297 19 N -0.310 5.310 20 C 0.251 3.749 21 C -0.544 4.544 22 H 0.065 0.935 23 C 0.069 3.931 24 N -0.889 5.889 25 Si 0.909 3.091 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.184 0.816 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 22.537 -2.211 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.035 3.965 3 C -0.332 4.332 4 C 0.398 3.602 5 O -0.421 6.421 6 O -0.268 6.268 7 C 0.017 3.983 8 C -0.092 4.092 9 C -0.146 4.146 10 C -0.165 4.165 11 C -0.161 4.161 12 C 0.024 3.976 13 H 0.097 0.903 14 O -0.292 6.292 15 C -0.033 4.033 16 C -0.181 4.181 17 C -0.107 4.107 18 N -0.116 5.116 19 N -0.086 5.086 20 C 0.134 3.866 21 C -0.582 4.582 22 H 0.084 0.916 23 C -0.136 4.136 24 N -0.526 5.526 25 Si 0.735 3.265 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.198 1.198 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.201 0.799 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.495 21.401 -2.300 21.989 hybrid contribution -0.701 0.113 0.851 1.109 sum 3.794 21.514 -1.449 21.894 Atomic orbital electron populations 1.20667 0.86608 1.05093 1.03529 1.21456 0.94979 0.86428 0.93663 1.18824 0.93786 0.89250 1.31346 1.20055 0.83369 0.84934 0.71807 1.90763 1.18016 1.84546 1.48779 1.86516 1.39828 1.15322 1.85104 1.22690 0.94769 0.78310 1.02556 1.22750 0.95245 0.93694 0.97510 1.22468 0.98457 0.99981 0.93743 1.22649 1.01524 0.94849 0.97473 1.22597 1.01792 0.97859 0.93885 1.23454 0.97455 0.89904 0.86749 0.90287 1.88875 1.83056 1.31548 1.25727 1.23605 1.00145 0.87505 0.92021 1.23525 0.99932 0.99717 0.94909 1.23906 0.96600 0.92118 0.98085 1.77215 0.98300 1.12349 1.23736 1.49442 1.02604 1.08310 1.48286 1.19905 0.96532 0.70637 0.99557 1.21209 1.47820 0.98245 0.90931 0.91632 1.24921 0.94361 0.95940 0.98344 1.69898 1.44244 1.07291 1.31147 0.86370 0.78935 0.77790 0.83387 1.19817 1.20832 1.19844 0.90195 0.89470 0.88690 0.90917 0.91239 0.90704 0.90201 0.90875 0.91120 0.91052 0.90182 0.92189 0.88864 0.89443 0.89854 0.79886 0.92442 0.92280 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 9.34 36.00 0.34 -1.40 16 2 C 0.17 3.42 7.01 -81.59 -0.57 2.85 16 3 C -0.32 -5.82 6.13 -105.08 -0.64 -6.47 16 4 C 0.55 9.14 7.95 34.41 0.27 9.42 16 5 O -0.53 -9.54 14.63 -19.28 -0.28 -9.82 16 6 O -0.35 -4.78 9.09 -40.63 -0.37 -5.15 16 7 C 0.09 1.01 4.45 37.16 0.17 1.18 16 8 C -0.09 -0.84 0.68 -151.17 -0.10 -0.94 16 9 C -0.11 -0.94 5.92 -25.00 -0.15 -1.09 16 10 C -0.13 -0.96 6.92 -24.56 -0.17 -1.13 16 11 C -0.12 -0.96 6.52 -24.92 -0.16 -1.12 16 12 C 0.08 0.74 3.95 -24.95 -0.10 0.64 16 13 H 0.08 0.68 7.86 -51.93 -0.41 0.27 16 14 O -0.37 -3.81 11.03 -35.23 -0.39 -4.20 16 15 C 0.04 0.36 7.72 38.20 0.29 0.66 16 16 C -0.14 -1.23 6.28 -23.99 -0.15 -1.38 16 17 C 0.08 1.43 11.87 -16.97 -0.20 1.23 16 18 N -0.30 -6.33 12.50 30.87 0.39 -5.94 16 19 N -0.31 -6.87 3.56 -57.76 -0.21 -7.08 16 20 C 0.25 6.09 5.78 -5.19 -0.03 6.06 16 21 C -0.54 -14.34 9.39 -34.44 -0.32 -14.66 16 22 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 24 N -0.89 -24.14 13.29 55.43 0.74 -23.40 16 25 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.09 1.56 7.71 -51.93 -0.40 1.16 16 31 H 0.09 1.59 6.51 -51.93 -0.34 1.25 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.07 0.60 7.26 -51.93 -0.38 0.22 16 35 H 0.08 0.78 7.49 -51.93 -0.39 0.39 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.64 8.01 -51.93 -0.42 0.23 16 40 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.79 7.68 -51.93 -0.40 0.39 16 43 H 0.08 0.66 7.29 -51.93 -0.38 0.28 16 44 H 0.18 2.53 8.06 -52.49 -0.42 2.11 16 45 H 0.06 1.38 7.64 -51.93 -0.40 0.98 16 46 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 47 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 385.23 15.07 5.81 5.81 Total: -1.00 -29.40 385.23 -8.25 -37.65 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.28 Total: 1.16 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.63 Total: -4.46 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.92 Total: -36.42 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -1.04 Total: -19.17 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.40 -8.25 -37.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772373909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.056 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds