Wall clock time and date at job start Tue Mar 31 2020 20:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38123 * 126.29638 * 2 1 4 4 C 1.47291 * 126.42624 * 359.97080 * 3 2 1 5 5 O 1.21524 * 119.99870 * 359.70857 * 4 3 2 6 6 O 1.34752 * 119.99986 * 179.71426 * 4 3 2 7 7 C 1.45204 * 116.99940 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47009 * 179.97438 * 7 6 4 9 9 C 1.54190 * 112.76081 * 299.89023 * 8 7 6 10 10 C 1.55106 * 103.71776 * 263.10728 * 9 8 7 11 11 C 1.54997 * 102.11434 * 319.43265 * 10 9 8 12 12 C 1.54448 * 104.16036 * 39.55183 * 11 10 9 13 13 H 1.09001 * 111.44399 * 98.02765 * 12 11 10 14 14 O 1.43809 * 108.48887 * 221.07120 * 12 11 10 15 15 C 1.44287 * 107.24251 * 139.99206 * 14 12 11 16 16 C 1.54979 * 103.49482 * 320.03258 * 15 14 12 17 17 C 1.41342 * 107.14958 * 179.70714 * 3 2 1 18 18 N 1.30434 * 108.00924 * 0.26345 * 17 3 2 19 19 N 1.34228 * 126.29942 * 180.15988 * 2 1 3 20 20 C 1.46507 * 125.74024 * 0.04371 * 19 2 1 21 21 C 1.50702 * 109.46981 * 270.31970 * 20 19 2 22 22 H 1.07998 * 120.00038 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99638 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00445 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99840 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47422 * 59.99452 * 25 23 21 27 27 H 1.48498 * 109.47417 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46681 * 299.99429 * 25 23 21 29 29 H 1.09000 * 109.47407 * 90.02450 * 1 2 3 30 30 H 1.09005 * 109.46620 * 210.02211 * 1 2 3 31 31 H 1.09002 * 109.46988 * 330.02024 * 1 2 3 32 32 H 1.09003 * 109.47098 * 59.99332 * 7 6 4 33 33 H 1.09009 * 109.46663 * 299.99650 * 7 6 4 34 34 H 1.09005 * 110.57397 * 144.55968 * 9 8 7 35 35 H 1.08991 * 110.57769 * 21.67053 * 9 8 7 36 36 H 1.09001 * 110.90447 * 201.22360 * 10 9 8 37 37 H 1.09009 * 110.90059 * 77.63232 * 10 9 8 38 38 H 1.09004 * 110.49311 * 158.22437 * 11 10 9 39 39 H 1.08996 * 110.49375 * 280.74663 * 11 10 9 40 40 H 1.09008 * 110.61909 * 78.53594 * 15 14 12 41 41 H 1.09006 * 110.61636 * 201.52770 * 15 14 12 42 42 H 1.09002 * 110.91303 * 155.64003 * 16 15 14 43 43 H 1.09005 * 110.90377 * 279.20987 * 16 15 14 44 44 H 1.07998 * 125.99739 * 180.26869 * 17 3 2 45 45 H 1.08996 * 109.47129 * 30.32191 * 20 19 2 46 46 H 1.09002 * 109.46584 * 150.32063 * 20 19 2 47 47 H 0.96997 * 120.00336 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5197 -0.0006 5 8 0.7018 2.7873 -0.0065 6 8 2.8014 3.5096 0.0053 7 6 2.2981 4.8717 0.0049 8 6 3.4744 5.8499 0.0127 9 6 4.3797 5.6846 1.2499 10 6 3.8686 6.7746 2.2279 11 6 3.6139 7.9715 1.2766 12 6 3.0046 7.3264 0.0125 13 1 1.9170 7.3992 0.0127 14 8 3.5737 7.9637 -1.1443 15 6 3.8169 6.9330 -2.1242 16 6 4.3471 5.7476 -1.2783 17 6 3.6598 0.6496 0.0069 18 7 3.6340 -0.6544 0.0050 19 7 2.3016 -1.0818 -0.0030 20 6 1.8498 -2.4755 -0.0078 21 6 1.6865 -2.9554 1.4114 22 1 1.8985 -2.2892 2.2345 23 6 1.2676 -4.2455 1.6588 24 7 1.0099 -5.0570 0.6564 25 14 1.0644 -4.8403 3.4179 26 1 0.0588 -3.9969 4.1127 27 1 0.6066 -6.2529 3.4131 28 1 2.3660 -4.7437 4.1264 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 1.6858 5.0330 0.8921 33 1 1.6946 5.0357 -0.8879 34 1 5.4226 5.8634 0.9881 35 1 4.2574 4.6924 1.6842 36 1 4.6301 7.0211 2.9679 37 1 2.9445 6.4597 2.7128 38 1 2.9094 8.6721 1.7250 39 1 4.5506 8.4747 1.0371 40 1 2.8915 6.6592 -2.6311 41 1 4.5684 7.2574 -2.8441 42 1 4.1721 4.7988 -1.7855 43 1 5.4054 5.8753 -1.0503 44 1 4.5460 1.2669 0.0128 45 1 0.8943 -2.5459 -0.5274 46 1 2.5875 -3.0947 -0.5182 47 1 0.7148 -5.9644 0.8305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772373909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:13 Heat of formation + Delta-G solvation = -90.893274 kcal Electronic energy + Delta-G solvation = -28935.990220 eV Core-core repulsion = 24891.020969 eV Total energy + Delta-G solvation = -4044.969251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -42.43751 -41.62013 -40.59029 -37.46814 -36.38793 -35.83711 -33.91239 -33.19082 -32.82412 -30.02736 -29.20812 -28.51150 -28.26193 -26.40063 -25.37482 -23.89270 -23.00628 -21.90816 -21.45021 -20.55809 -20.16877 -18.92016 -18.66700 -17.74880 -17.55049 -17.21553 -16.90374 -16.64599 -16.28761 -16.05768 -15.98848 -15.25950 -15.14414 -14.75059 -14.52841 -14.44631 -14.22506 -14.18399 -13.69900 -13.62792 -13.56349 -13.19820 -13.13930 -13.00724 -12.82216 -12.70914 -12.38648 -12.31257 -12.04592 -11.97021 -11.89603 -11.83793 -11.78738 -11.67008 -11.54930 -11.25942 -11.22595 -10.76473 -10.58785 -10.32805 -9.66702 -8.38743 -6.55255 0.42786 1.18800 1.37929 1.39286 1.41040 1.49565 1.87671 2.24147 2.32373 2.82415 2.93912 3.30444 3.45802 3.66273 3.71232 3.79886 3.93042 4.03148 4.08893 4.10223 4.17315 4.21963 4.28536 4.35482 4.45014 4.51081 4.58524 4.62313 4.69251 4.75924 4.78094 4.85101 4.88470 4.97863 5.01743 5.04406 5.07196 5.09893 5.12916 5.21670 5.28614 5.41241 5.43049 5.47910 5.61178 5.72974 5.94963 5.96289 6.52949 6.72672 6.89604 7.16095 8.69043 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.002341 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.796447 B =11959.661993 C =12248.639737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.161 3.839 3 C -0.321 4.321 4 C 0.558 3.442 5 O -0.544 6.544 6 O -0.342 6.342 7 C 0.089 3.911 8 C -0.089 4.089 9 C -0.109 4.109 10 C -0.124 4.124 11 C -0.120 4.120 12 C 0.080 3.920 13 H 0.080 0.920 14 O -0.389 6.389 15 C 0.041 3.959 16 C -0.141 4.141 17 C 0.099 3.901 18 N -0.335 5.335 19 N -0.334 5.334 20 C 0.266 3.734 21 C -0.559 4.559 22 H 0.053 0.947 23 C 0.026 3.974 24 N -0.915 5.915 25 Si 0.970 3.030 26 H -0.266 1.266 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.224 0.776 45 H 0.055 0.945 46 H 0.034 0.966 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 24.251 -1.481 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.024 3.976 3 C -0.334 4.334 4 C 0.406 3.594 5 O -0.437 6.437 6 O -0.258 6.258 7 C 0.015 3.985 8 C -0.090 4.090 9 C -0.147 4.147 10 C -0.161 4.161 11 C -0.158 4.158 12 C 0.022 3.978 13 H 0.098 0.902 14 O -0.308 6.308 15 C -0.035 4.035 16 C -0.179 4.179 17 C -0.089 4.089 18 N -0.154 5.154 19 N -0.110 5.110 20 C 0.148 3.852 21 C -0.597 4.597 22 H 0.071 0.929 23 C -0.176 4.176 24 N -0.553 5.553 25 Si 0.793 3.207 26 H -0.190 1.190 27 H -0.198 1.198 28 H -0.199 1.199 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.240 0.760 45 H 0.073 0.927 46 H 0.052 0.948 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.901 23.144 -1.579 23.710 hybrid contribution -0.790 -0.268 0.568 1.009 sum 4.112 22.877 -1.010 23.265 Atomic orbital electron populations 1.20683 0.85241 1.04737 1.04588 1.21955 0.96071 0.86356 0.93238 1.19035 0.93816 0.89966 1.30568 1.19749 0.83332 0.84866 0.71472 1.90757 1.18702 1.84794 1.49401 1.86496 1.38912 1.16012 1.84391 1.22911 0.95849 0.77060 1.02681 1.22723 0.94714 0.93280 0.98258 1.22475 0.98815 0.99729 0.93656 1.22640 1.01797 0.94272 0.97421 1.22583 1.01884 0.97998 0.93307 1.23532 0.97655 0.89598 0.87037 0.90176 1.88862 1.83199 1.32423 1.26335 1.23720 1.00700 0.87116 0.91970 1.23524 1.00288 0.99555 0.94510 1.24530 0.97756 0.91204 0.95362 1.77171 0.98218 1.14222 1.25836 1.49187 1.03387 1.07885 1.50525 1.19442 0.95528 0.71937 0.98276 1.21367 1.48180 0.98563 0.91544 0.92874 1.25703 0.93799 0.95913 1.02166 1.69979 1.44660 1.07674 1.32994 0.85425 0.78836 0.77700 0.78702 1.19049 1.19828 1.19897 0.88420 0.90585 0.88044 0.90815 0.91165 0.89941 0.91355 0.89737 0.91228 0.90109 0.90310 0.92090 0.87391 0.89938 0.89036 0.76004 0.92729 0.94789 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.24 9.34 71.24 0.67 -2.57 16 2 C 0.16 6.35 7.01 42.16 0.30 6.64 16 3 C -0.32 -11.38 6.13 -20.16 -0.12 -11.50 16 4 C 0.56 17.68 7.95 70.20 0.56 18.24 16 5 O -0.54 -18.84 14.63 19.76 0.29 -18.55 16 6 O -0.34 -8.67 9.09 -56.62 -0.51 -9.18 16 7 C 0.09 1.83 4.45 71.98 0.32 2.15 16 8 C -0.09 -1.47 0.68 -50.02 -0.03 -1.51 16 9 C -0.11 -1.67 5.92 31.72 0.19 -1.48 16 10 C -0.12 -1.60 6.92 32.00 0.22 -1.38 16 11 C -0.12 -1.61 6.52 31.77 0.21 -1.41 16 12 C 0.08 1.28 3.95 31.75 0.13 1.41 16 13 H 0.08 1.26 7.86 -2.39 -0.02 1.24 16 14 O -0.39 -7.26 11.03 -148.98 -1.64 -8.90 16 15 C 0.04 0.61 7.72 72.66 0.56 1.17 16 16 C -0.14 -2.14 6.28 32.37 0.20 -1.94 16 17 C 0.10 3.37 11.87 85.66 1.02 4.39 16 18 N -0.34 -14.33 12.50 -56.25 -0.70 -15.03 16 19 N -0.33 -15.02 3.56 -336.64 -1.20 -16.22 16 20 C 0.27 13.38 5.78 85.63 0.49 13.87 16 21 C -0.56 -30.05 9.39 25.60 0.24 -29.81 16 22 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 23 C 0.03 1.37 5.46 84.65 0.46 1.83 16 24 N -0.92 -50.25 13.29 21.45 0.28 -49.96 16 25 Si 0.97 41.80 29.54 68.60 2.03 43.82 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 29 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.08 2.76 7.71 -2.38 -0.02 2.74 16 31 H 0.10 3.32 6.51 -2.39 -0.02 3.31 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.08 1.13 7.26 -2.38 -0.02 1.12 16 35 H 0.07 1.21 7.49 -2.39 -0.02 1.19 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.08 1.10 8.01 -2.39 -0.02 1.08 16 40 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.08 1.34 7.68 -2.39 -0.02 1.32 16 43 H 0.09 1.24 7.29 -2.38 -0.02 1.22 16 44 H 0.22 5.52 8.06 -2.91 -0.02 5.50 16 45 H 0.05 2.72 7.64 -2.39 -0.02 2.70 16 46 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -62.61 385.23 4.91 -57.70 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.97 Total: 18.20 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 5.40 Total: -1.88 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -1.62 Total: -81.21 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -1.87 Total: -36.63 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -62.61 4.91 -57.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772373909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.191 kcal (2) G-P(sol) polarization free energy of solvation -62.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds