Wall clock time and date at job start Tue Mar 31 2020 20:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38123 * 126.29698 * 2 1 4 4 C 1.47281 * 126.43000 * 0.02562 * 3 2 1 5 5 O 1.21531 * 119.99827 * 0.28820 * 4 3 2 6 6 O 1.34749 * 120.00178 * 180.29448 * 4 3 2 7 7 C 1.45207 * 117.00046 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.46833 * 179.97438 * 7 6 4 9 9 C 1.51087 * 110.61845 * 291.28504 * 8 7 6 10 10 C 1.54966 * 104.87990 * 276.40946 * 9 8 7 11 11 C 1.56250 * 105.87044 * 353.56034 * 10 9 8 12 12 C 1.50710 * 101.85653 * 335.02180 * 11 10 9 13 13 H 1.08993 * 108.30362 * 292.16762 * 12 11 10 14 14 O 1.39682 * 127.82005 * 158.72273 * 12 11 10 15 15 C 1.46169 * 103.81304 * 198.35213 * 14 12 11 16 16 C 1.51579 * 110.63129 * 71.43328 * 8 7 6 17 17 C 1.41351 * 107.14281 * 180.27174 * 3 2 1 18 18 N 1.30428 * 108.01528 * 359.76437 * 17 3 2 19 19 N 1.34224 * 126.29495 * 179.87374 * 2 1 3 20 20 C 1.46507 * 125.74307 * 359.97438 * 19 2 1 21 21 C 1.50697 * 109.47006 * 269.72219 * 20 19 2 22 22 H 1.07991 * 120.00449 * 359.72165 * 21 20 19 23 23 C 1.37885 * 119.99686 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99913 * 359.72095 * 23 21 20 25 25 Si 1.86798 * 119.99766 * 179.72528 * 23 21 20 26 26 H 1.48493 * 109.47326 * 90.00142 * 25 23 21 27 27 H 1.48506 * 109.46545 * 209.99892 * 25 23 21 28 28 H 1.48498 * 109.47210 * 329.99603 * 25 23 21 29 29 H 1.09000 * 109.47448 * 270.12987 * 1 2 3 30 30 H 1.09004 * 109.46895 * 30.13200 * 1 2 3 31 31 H 1.09006 * 109.47207 * 150.12431 * 1 2 3 32 32 H 1.08994 * 109.46705 * 299.99763 * 7 6 4 33 33 H 1.08997 * 109.47163 * 59.99905 * 7 6 4 34 34 H 1.09000 * 110.42261 * 35.81307 * 9 8 7 35 35 H 1.08997 * 110.42576 * 158.29849 * 9 8 7 36 36 H 1.08991 * 110.55077 * 234.26142 * 10 9 8 37 37 H 1.09004 * 109.86370 * 112.49022 * 10 9 8 38 38 H 1.09000 * 110.94866 * 216.88371 * 11 10 9 39 39 H 1.09001 * 110.95428 * 93.16282 * 11 10 9 40 40 H 1.09000 * 110.03046 * 147.30311 * 15 14 12 41 41 H 1.08991 * 110.03060 * 268.69001 * 15 14 12 42 42 H 1.08997 * 110.86206 * 202.79413 * 16 8 7 43 43 H 1.09001 * 110.85555 * 326.44559 * 16 8 7 44 44 H 1.07998 * 125.98851 * 179.75142 * 17 3 2 45 45 H 1.08998 * 109.47049 * 149.71647 * 20 19 2 46 46 H 1.09001 * 109.46896 * 29.71919 * 20 19 2 47 47 H 0.97000 * 119.99651 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8873 2.5196 0.0005 5 8 0.7019 2.7873 0.0063 6 8 2.8016 3.5095 -0.0055 7 6 2.2984 4.8716 -0.0040 8 6 3.4748 5.8498 -0.0109 9 6 4.2189 5.7963 1.3029 10 6 3.4247 6.7325 2.2485 11 6 2.3367 7.4153 1.3588 12 6 2.9641 7.3410 -0.0094 13 1 3.8345 7.9969 -0.0229 14 8 2.3255 7.4128 -1.2496 15 6 3.3030 6.8489 -2.1787 16 6 4.1673 5.8428 -1.3592 17 6 3.6599 0.6494 -0.0064 18 7 3.6340 -0.6546 -0.0049 19 7 2.3015 -1.0818 0.0024 20 6 1.8497 -2.4755 0.0060 21 6 1.7019 -2.9519 1.4280 22 1 1.9267 -2.2850 2.2471 23 6 1.2846 -4.2411 1.6832 24 7 1.0103 -5.0531 0.6857 25 14 1.1087 -4.8341 3.4458 26 1 -0.2691 -4.5578 3.9259 27 1 1.3699 -6.2948 3.5050 28 1 2.0855 -4.1213 4.3077 29 1 -0.3634 0.0023 1.0276 30 1 -0.3633 0.8888 -0.5159 31 1 -0.3634 -0.8911 -0.5119 32 1 1.6856 5.0334 -0.8907 33 1 1.6955 5.0352 0.8892 34 1 4.2342 4.7775 1.6902 35 1 5.2344 6.1730 1.1806 36 1 4.0824 7.4857 2.6822 37 1 2.9520 6.1477 3.0376 38 1 2.1805 8.4511 1.6603 39 1 1.4012 6.8566 1.3895 40 1 2.7914 6.3285 -2.9884 41 1 3.9333 7.6406 -2.5834 42 1 5.1944 6.1966 -1.2699 43 1 4.1353 4.8495 -1.8068 44 1 4.5461 1.2667 -0.0119 45 1 2.5817 -3.0960 -0.5110 46 1 0.8885 -2.5471 -0.5030 47 1 0.7164 -5.9599 0.8653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772373910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:19 Heat of formation + Delta-G solvation = -53.737999 kcal Electronic energy + Delta-G solvation = -29154.261971 eV Core-core repulsion = 25110.903893 eV Total energy + Delta-G solvation = -4043.358078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.57840 -40.83668 -39.35319 -36.56576 -35.77417 -33.93756 -32.44253 -32.14267 -31.25992 -28.71865 -28.16524 -27.54025 -26.77657 -25.84032 -23.57799 -22.50857 -22.31328 -20.84252 -20.31862 -19.48811 -18.89578 -17.45680 -17.11717 -16.81347 -16.39805 -15.96722 -15.76866 -15.50432 -15.18144 -14.86735 -14.55420 -14.31568 -14.31392 -13.51572 -13.15075 -13.06087 -12.94097 -12.73128 -12.60646 -12.52646 -12.29031 -12.15307 -11.98003 -11.84382 -11.59666 -11.55564 -11.16911 -11.12433 -10.92676 -10.91573 -10.74952 -10.53793 -10.42343 -10.32498 -10.29064 -9.97367 -9.89563 -9.70418 -8.73996 -8.65923 -8.07477 -6.36825 -4.44857 1.92983 2.66099 2.71849 3.16062 3.16422 3.23055 3.28400 3.45408 3.68398 4.13568 4.21871 4.23799 4.40206 4.64202 4.67972 4.86037 4.89045 4.97213 4.98388 5.00803 5.06686 5.13896 5.22027 5.25305 5.34642 5.45371 5.52540 5.54320 5.56669 5.60855 5.68679 5.71986 5.82400 5.87924 5.91718 5.98837 6.03805 6.04540 6.35928 6.38792 6.56511 6.72008 6.80340 6.86308 7.12393 7.50997 7.70298 7.73415 8.20409 8.34796 8.60477 9.22273 10.71459 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022410 B = 0.002433 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.133786 B =11503.561780 C =11789.069825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.172 3.828 3 C -0.318 4.318 4 C 0.550 3.450 5 O -0.530 6.530 6 O -0.353 6.353 7 C 0.089 3.911 8 C -0.110 4.110 9 C -0.106 4.106 10 C -0.121 4.121 11 C -0.111 4.111 12 C 0.070 3.930 13 H 0.062 0.938 14 O -0.356 6.356 15 C 0.044 3.956 16 C -0.137 4.137 17 C 0.080 3.920 18 N -0.297 5.297 19 N -0.311 5.311 20 C 0.250 3.750 21 C -0.541 4.541 22 H 0.066 0.934 23 C 0.068 3.932 24 N -0.889 5.889 25 Si 0.909 3.091 26 H -0.276 1.276 27 H -0.282 1.282 28 H -0.271 1.271 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.184 0.816 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.968 23.515 -2.162 24.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.034 3.966 3 C -0.331 4.331 4 C 0.397 3.603 5 O -0.420 6.420 6 O -0.271 6.271 7 C 0.015 3.985 8 C -0.110 4.110 9 C -0.144 4.144 10 C -0.158 4.158 11 C -0.149 4.149 12 C 0.011 3.989 13 H 0.080 0.920 14 O -0.275 6.275 15 C -0.032 4.032 16 C -0.174 4.174 17 C -0.107 4.107 18 N -0.117 5.117 19 N -0.087 5.087 20 C 0.134 3.866 21 C -0.580 4.580 22 H 0.084 0.916 23 C -0.136 4.136 24 N -0.526 5.526 25 Si 0.735 3.265 26 H -0.202 1.202 27 H -0.208 1.208 28 H -0.196 1.196 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.201 0.799 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.057 22.242 -2.269 22.922 hybrid contribution -0.374 0.277 0.891 1.005 sum 4.683 22.519 -1.378 23.042 Atomic orbital electron populations 1.20619 0.86581 1.03999 1.04177 1.21454 0.94968 0.86465 0.93757 1.18834 0.93742 0.89316 1.31240 1.20040 0.83410 0.84928 0.71891 1.90764 1.18028 1.84568 1.48682 1.86478 1.39951 1.15585 1.85043 1.22778 0.95022 0.77813 1.02885 1.22175 0.96838 0.96322 0.95676 1.21503 0.98582 1.01102 0.93173 1.22746 0.96786 0.98320 0.97974 1.21920 0.99510 1.01825 0.91621 1.22559 0.95181 0.94077 0.87096 0.92046 1.88497 1.39418 1.82884 1.16669 1.24128 0.90623 0.95551 0.92869 1.22416 0.99242 1.01065 0.94696 1.23898 0.96608 0.92109 0.98116 1.77209 0.98273 1.12353 1.23828 1.49419 1.02607 1.08295 1.48348 1.19904 0.96505 0.70656 0.99578 1.21240 1.47537 0.98285 0.90915 0.91599 1.24925 0.94380 0.95943 0.98375 1.69912 1.44219 1.07293 1.31223 0.86311 0.78767 0.78001 0.83399 1.20184 1.20752 1.19589 0.89527 0.88884 0.90478 0.90946 0.91141 0.90006 0.91128 0.90976 0.90763 0.90506 0.90217 0.89172 0.91458 0.90154 0.89234 0.79912 0.92338 0.92440 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.56 36.01 0.34 -1.34 16 2 C 0.17 3.47 7.01 -81.59 -0.57 2.89 16 3 C -0.32 -5.97 6.13 -105.08 -0.64 -6.61 16 4 C 0.55 9.54 7.95 34.41 0.27 9.82 16 5 O -0.53 -9.98 14.64 -19.29 -0.28 -10.27 16 6 O -0.35 -5.13 9.34 -40.62 -0.38 -5.51 16 7 C 0.09 1.10 3.78 37.16 0.14 1.24 16 8 C -0.11 -1.04 0.80 -153.67 -0.12 -1.16 16 9 C -0.11 -0.89 6.04 -26.66 -0.16 -1.05 16 10 C -0.12 -0.87 6.72 -23.95 -0.16 -1.03 16 11 C -0.11 -0.89 6.31 -26.13 -0.16 -1.05 16 12 C 0.07 0.63 3.12 -25.35 -0.08 0.55 16 13 H 0.06 0.49 8.01 -51.93 -0.42 0.07 16 14 O -0.36 -3.83 10.87 -32.06 -0.35 -4.18 16 15 C 0.04 0.37 7.39 38.71 0.29 0.65 16 16 C -0.14 -1.14 6.28 -25.90 -0.16 -1.30 16 17 C 0.08 1.45 11.87 -16.96 -0.20 1.25 16 18 N -0.30 -6.43 12.50 30.87 0.39 -6.04 16 19 N -0.31 -6.98 3.56 -57.76 -0.21 -7.18 16 20 C 0.25 6.15 5.97 -5.19 -0.03 6.12 16 21 C -0.54 -14.44 9.39 -34.44 -0.32 -14.76 16 22 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 24 N -0.89 -24.34 13.29 55.43 0.74 -23.61 16 25 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 29 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 30 H 0.09 1.55 6.52 -51.93 -0.34 1.21 16 31 H 0.08 1.31 7.05 -51.93 -0.37 0.95 16 32 H 0.07 0.97 7.36 -51.93 -0.38 0.59 16 33 H 0.07 0.89 6.32 -51.93 -0.33 0.56 16 34 H 0.08 0.80 7.61 -51.93 -0.40 0.40 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.71 6.73 -51.93 -0.35 0.36 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.82 7.74 -51.93 -0.40 0.42 16 44 H 0.18 2.59 8.06 -52.49 -0.42 2.17 16 45 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 46 H 0.06 1.39 7.01 -51.93 -0.36 1.03 16 47 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -30.12 380.62 -8.17 -38.29 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.11 Total: 1.23 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.68 Total: -4.07 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.92 Total: -36.83 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -1.01 Total: -19.96 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.12 -8.17 -38.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772373910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.448 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds