Wall clock time and date at job start Tue Mar 31 2020 20:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38123 * 126.29698 * 2 1 4 4 C 1.47281 * 126.43000 * 0.02562 * 3 2 1 5 5 O 1.21531 * 119.99827 * 0.28820 * 4 3 2 6 6 O 1.34749 * 120.00178 * 180.29448 * 4 3 2 7 7 C 1.45207 * 117.00046 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.46833 * 179.97438 * 7 6 4 9 9 C 1.51087 * 110.61845 * 291.28504 * 8 7 6 10 10 C 1.54966 * 104.87990 * 276.40946 * 9 8 7 11 11 C 1.56250 * 105.87044 * 353.56034 * 10 9 8 12 12 C 1.50710 * 101.85653 * 335.02180 * 11 10 9 13 13 H 1.08993 * 108.30362 * 292.16762 * 12 11 10 14 14 O 1.39682 * 127.82005 * 158.72273 * 12 11 10 15 15 C 1.46169 * 103.81304 * 198.35213 * 14 12 11 16 16 C 1.51579 * 110.63129 * 71.43328 * 8 7 6 17 17 C 1.41351 * 107.14281 * 180.27174 * 3 2 1 18 18 N 1.30428 * 108.01528 * 359.76437 * 17 3 2 19 19 N 1.34224 * 126.29495 * 179.87374 * 2 1 3 20 20 C 1.46507 * 125.74307 * 359.97438 * 19 2 1 21 21 C 1.50697 * 109.47006 * 269.72219 * 20 19 2 22 22 H 1.07991 * 120.00449 * 359.72165 * 21 20 19 23 23 C 1.37885 * 119.99686 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99913 * 359.72095 * 23 21 20 25 25 Si 1.86798 * 119.99766 * 179.72528 * 23 21 20 26 26 H 1.48493 * 109.47326 * 90.00142 * 25 23 21 27 27 H 1.48506 * 109.46545 * 209.99892 * 25 23 21 28 28 H 1.48498 * 109.47210 * 329.99603 * 25 23 21 29 29 H 1.09000 * 109.47448 * 270.12987 * 1 2 3 30 30 H 1.09004 * 109.46895 * 30.13200 * 1 2 3 31 31 H 1.09006 * 109.47207 * 150.12431 * 1 2 3 32 32 H 1.08994 * 109.46705 * 299.99763 * 7 6 4 33 33 H 1.08997 * 109.47163 * 59.99905 * 7 6 4 34 34 H 1.09000 * 110.42261 * 35.81307 * 9 8 7 35 35 H 1.08997 * 110.42576 * 158.29849 * 9 8 7 36 36 H 1.08991 * 110.55077 * 234.26142 * 10 9 8 37 37 H 1.09004 * 109.86370 * 112.49022 * 10 9 8 38 38 H 1.09000 * 110.94866 * 216.88371 * 11 10 9 39 39 H 1.09001 * 110.95428 * 93.16282 * 11 10 9 40 40 H 1.09000 * 110.03046 * 147.30311 * 15 14 12 41 41 H 1.08991 * 110.03060 * 268.69001 * 15 14 12 42 42 H 1.08997 * 110.86206 * 202.79413 * 16 8 7 43 43 H 1.09001 * 110.85555 * 326.44559 * 16 8 7 44 44 H 1.07998 * 125.98851 * 179.75142 * 17 3 2 45 45 H 1.08998 * 109.47049 * 149.71647 * 20 19 2 46 46 H 1.09001 * 109.46896 * 29.71919 * 20 19 2 47 47 H 0.97000 * 119.99651 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8873 2.5196 0.0005 5 8 0.7019 2.7873 0.0063 6 8 2.8016 3.5095 -0.0055 7 6 2.2984 4.8716 -0.0040 8 6 3.4748 5.8498 -0.0109 9 6 4.2189 5.7963 1.3029 10 6 3.4247 6.7325 2.2485 11 6 2.3367 7.4153 1.3588 12 6 2.9641 7.3410 -0.0094 13 1 3.8345 7.9969 -0.0229 14 8 2.3255 7.4128 -1.2496 15 6 3.3030 6.8489 -2.1787 16 6 4.1673 5.8428 -1.3592 17 6 3.6599 0.6494 -0.0064 18 7 3.6340 -0.6546 -0.0049 19 7 2.3015 -1.0818 0.0024 20 6 1.8497 -2.4755 0.0060 21 6 1.7019 -2.9519 1.4280 22 1 1.9267 -2.2850 2.2471 23 6 1.2846 -4.2411 1.6832 24 7 1.0103 -5.0531 0.6857 25 14 1.1087 -4.8341 3.4458 26 1 -0.2691 -4.5578 3.9259 27 1 1.3699 -6.2948 3.5050 28 1 2.0855 -4.1213 4.3077 29 1 -0.3634 0.0023 1.0276 30 1 -0.3633 0.8888 -0.5159 31 1 -0.3634 -0.8911 -0.5119 32 1 1.6856 5.0334 -0.8907 33 1 1.6955 5.0352 0.8892 34 1 4.2342 4.7775 1.6902 35 1 5.2344 6.1730 1.1806 36 1 4.0824 7.4857 2.6822 37 1 2.9520 6.1477 3.0376 38 1 2.1805 8.4511 1.6603 39 1 1.4012 6.8566 1.3895 40 1 2.7914 6.3285 -2.9884 41 1 3.9333 7.6406 -2.5834 42 1 5.1944 6.1966 -1.2699 43 1 4.1353 4.8495 -1.8068 44 1 4.5461 1.2667 -0.0119 45 1 2.5817 -3.0960 -0.5110 46 1 0.8885 -2.5471 -0.5030 47 1 0.7164 -5.9599 0.8653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772373910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:18 Heat of formation + Delta-G solvation = -69.821939 kcal Electronic energy + Delta-G solvation = -29154.959423 eV Core-core repulsion = 25110.903893 eV Total energy + Delta-G solvation = -4044.055530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.51166 -42.21837 -40.66662 -37.54588 -36.79091 -35.84174 -33.92534 -33.15081 -32.84745 -29.88640 -28.97329 -28.80126 -28.30049 -26.77407 -25.42081 -23.80081 -23.10977 -21.82754 -21.46348 -20.53421 -20.21565 -18.94014 -18.70954 -18.06909 -17.49897 -17.11554 -16.71641 -16.63349 -16.44524 -16.15381 -15.96540 -15.67386 -15.10337 -14.95723 -14.42589 -14.38334 -14.02361 -14.00584 -13.74294 -13.64717 -13.61304 -13.37146 -13.16703 -13.14436 -13.01240 -12.70288 -12.68504 -12.33465 -12.21980 -11.94078 -11.89359 -11.87743 -11.56055 -11.47465 -11.31909 -11.29498 -11.17779 -10.76610 -10.48787 -10.34468 -9.67674 -8.39270 -6.55460 0.41538 1.17861 1.36698 1.37660 1.39943 1.50624 1.83713 2.22839 2.32106 2.50434 2.93595 3.44987 3.55231 3.61612 3.64929 3.80166 3.93815 4.02739 4.03045 4.14510 4.20921 4.23192 4.28060 4.35041 4.36940 4.44248 4.53410 4.59922 4.64714 4.74449 4.77609 4.87070 4.93466 4.93618 4.97640 5.01411 5.06828 5.09327 5.19168 5.24486 5.26253 5.41307 5.43528 5.47886 5.59900 5.72587 5.91135 5.95114 6.52664 6.71180 6.88965 7.15779 8.68888 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022410 B = 0.002433 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.133786 B =11503.561780 C =11789.069825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.160 3.840 3 C -0.321 4.321 4 C 0.556 3.444 5 O -0.546 6.546 6 O -0.343 6.343 7 C 0.089 3.911 8 C -0.110 4.110 9 C -0.106 4.106 10 C -0.116 4.116 11 C -0.114 4.114 12 C 0.069 3.931 13 H 0.080 0.920 14 O -0.383 6.383 15 C 0.041 3.959 16 C -0.134 4.134 17 C 0.099 3.901 18 N -0.334 5.334 19 N -0.333 5.333 20 C 0.266 3.734 21 C -0.557 4.557 22 H 0.053 0.947 23 C 0.025 3.975 24 N -0.916 5.916 25 Si 0.971 3.029 26 H -0.266 1.266 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.224 0.776 45 H 0.034 0.966 46 H 0.055 0.945 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 25.489 -1.294 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.023 3.977 3 C -0.334 4.334 4 C 0.403 3.597 5 O -0.439 6.439 6 O -0.260 6.260 7 C 0.015 3.985 8 C -0.110 4.110 9 C -0.143 4.143 10 C -0.154 4.154 11 C -0.152 4.152 12 C 0.010 3.990 13 H 0.098 0.902 14 O -0.302 6.302 15 C -0.035 4.035 16 C -0.172 4.172 17 C -0.088 4.088 18 N -0.153 5.153 19 N -0.109 5.109 20 C 0.148 3.852 21 C -0.595 4.595 22 H 0.071 0.929 23 C -0.176 4.176 24 N -0.554 5.554 25 Si 0.795 3.205 26 H -0.191 1.191 27 H -0.199 1.199 28 H -0.198 1.198 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.096 0.904 44 H 0.240 0.760 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.142 24.239 -1.411 25.045 hybrid contribution -0.691 -0.193 0.566 0.914 sum 5.450 24.046 -0.845 24.670 Atomic orbital electron populations 1.20645 0.85253 1.04492 1.04457 1.21939 0.96048 0.86391 0.93315 1.19034 0.93915 0.89855 1.30592 1.19815 0.83369 0.84981 0.71502 1.90756 1.18830 1.84860 1.49433 1.86467 1.38999 1.16186 1.84314 1.22971 0.96564 0.77008 1.01974 1.22231 0.96027 0.95855 0.96916 1.21522 0.99711 1.00621 0.92480 1.22744 0.96678 0.98498 0.97434 1.21980 0.99023 1.02619 0.91543 1.22719 0.95730 0.93633 0.86872 0.90190 1.88472 1.40815 1.83171 1.17711 1.24268 0.90521 0.96216 0.92459 1.22438 1.00379 1.00639 0.93721 1.24525 0.97690 0.91218 0.95369 1.77168 0.98154 1.14145 1.25837 1.49180 1.03380 1.07878 1.50454 1.19460 0.95570 0.71878 0.98335 1.21385 1.48028 0.98635 0.91484 0.92911 1.25714 0.93760 0.95883 1.02271 1.69990 1.44556 1.07718 1.33096 0.85351 0.78971 0.77650 0.78541 1.19086 1.19888 1.19843 0.89255 0.87933 0.90324 0.92260 0.91689 0.91605 0.89116 0.88825 0.91305 0.88955 0.91921 0.89450 0.89291 0.87880 0.90378 0.75956 0.94751 0.92698 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.21 9.56 71.24 0.68 -2.53 16 2 C 0.16 6.51 7.01 42.17 0.30 6.80 16 3 C -0.32 -11.86 6.13 -20.16 -0.12 -11.98 16 4 C 0.56 18.92 7.95 70.20 0.56 19.48 16 5 O -0.55 -20.44 14.64 19.74 0.29 -20.16 16 6 O -0.34 -9.59 9.34 -56.59 -0.53 -10.12 16 7 C 0.09 2.13 3.78 71.98 0.27 2.40 16 8 C -0.11 -1.87 0.80 -51.64 -0.04 -1.91 16 9 C -0.11 -1.51 6.04 30.64 0.19 -1.33 16 10 C -0.12 -1.41 6.72 32.40 0.22 -1.19 16 11 C -0.11 -1.62 6.31 30.98 0.20 -1.43 16 12 C 0.07 1.10 3.12 31.49 0.10 1.20 16 13 H 0.08 1.00 8.01 -2.39 -0.02 0.98 16 14 O -0.38 -7.71 10.87 -137.63 -1.50 -9.21 16 15 C 0.04 0.60 7.39 72.99 0.54 1.14 16 16 C -0.13 -1.94 6.28 31.13 0.20 -1.74 16 17 C 0.10 3.49 11.87 85.67 1.02 4.50 16 18 N -0.33 -14.50 12.50 -56.24 -0.70 -15.20 16 19 N -0.33 -15.25 3.56 -336.65 -1.20 -16.44 16 20 C 0.27 13.50 5.97 85.63 0.51 14.01 16 21 C -0.56 -30.29 9.39 25.60 0.24 -30.05 16 22 H 0.05 2.95 7.81 -2.92 -0.02 2.93 16 23 C 0.03 1.35 5.46 84.66 0.46 1.81 16 24 N -0.92 -50.58 13.29 21.45 0.28 -50.30 16 25 Si 0.97 42.14 29.54 68.60 2.03 44.17 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 29 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.10 3.41 6.52 -2.38 -0.02 3.40 16 31 H 0.08 2.73 7.05 -2.38 -0.02 2.71 16 32 H 0.06 1.59 7.36 -2.39 -0.02 1.57 16 33 H 0.06 1.64 6.32 -2.39 -0.02 1.62 16 34 H 0.07 1.17 7.61 -2.39 -0.02 1.15 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.09 6.73 -2.39 -0.02 1.08 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.08 1.31 7.74 -2.39 -0.02 1.29 16 44 H 0.22 5.73 8.06 -2.91 -0.02 5.70 16 45 H 0.03 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.06 2.76 7.01 -2.39 -0.02 2.75 16 47 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -65.06 380.62 4.95 -60.11 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.98 Total: 17.98 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.30 Total: -0.82 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -1.62 Total: -81.95 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.74 Total: -39.48 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -65.06 4.95 -60.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772373910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.717 kcal (2) G-P(sol) polarization free energy of solvation -65.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds