Wall clock time and date at job start Tue Mar 31 2020 20:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35349 * 126.37669 * 2 1 4 4 C 1.41547 * 105.50124 * 180.02562 * 3 2 1 5 5 C 1.47582 * 126.52527 * 180.02562 * 4 3 2 6 6 O 1.21487 * 119.99885 * 359.97008 * 5 4 3 7 7 O 1.34730 * 120.00155 * 179.97438 * 5 4 3 8 8 C 1.45197 * 117.00217 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47155 * 330.00396 * 8 7 5 10 10 C 1.50698 * 109.47572 * 210.00057 * 8 7 5 11 11 H 1.08007 * 119.99767 * 359.97438 * 10 8 7 12 12 C 1.37871 * 120.00155 * 180.02562 * 10 8 7 13 13 N 1.31516 * 120.00231 * 359.97438 * 12 10 8 14 14 Si 1.86807 * 119.99980 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47134 * 59.99438 * 14 12 10 16 16 H 1.48503 * 109.47022 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46837 * 299.99642 * 14 12 10 18 18 C 1.53007 * 109.46983 * 89.99906 * 8 7 5 19 19 C 1.52997 * 117.49590 * 8.74688 * 18 8 7 20 20 C 1.53000 * 117.49722 * 300.08997 * 18 8 7 21 21 N 1.31854 * 106.95296 * 0.02562 * 4 3 2 22 22 N 1.28474 * 110.06099 * 359.97438 * 21 4 3 23 23 C 1.46501 * 124.87617 * 179.73381 * 22 21 4 24 24 C 1.53178 * 109.54151 * 59.58597 * 23 22 21 25 25 C 1.53101 * 109.16189 * 183.14943 * 24 23 22 26 26 O 1.42900 * 109.41312 * 57.60589 * 25 24 23 27 27 C 1.42897 * 114.10269 * 298.84436 * 26 25 24 28 28 C 1.53095 * 109.41847 * 61.15498 * 27 26 25 29 29 H 1.09003 * 109.47629 * 269.95721 * 1 2 3 30 30 H 1.09003 * 109.47576 * 29.96395 * 1 2 3 31 31 H 1.09004 * 109.47202 * 149.95953 * 1 2 3 32 32 H 1.08001 * 127.25038 * 0.05258 * 3 2 1 33 33 H 0.97001 * 120.00137 * 180.02562 * 13 12 10 34 34 H 1.08997 * 115.54814 * 154.41750 * 18 8 7 35 35 H 1.08998 * 117.49952 * 0.02562 * 19 18 8 36 36 H 1.09005 * 117.49635 * 145.01691 * 19 18 8 37 37 H 1.09000 * 117.49712 * 214.97579 * 20 18 8 38 38 H 1.08999 * 117.50136 * 359.97319 * 20 18 8 39 39 H 1.09002 * 109.54193 * 179.85082 * 23 22 21 40 40 H 1.08999 * 109.52536 * 303.05275 * 24 23 22 41 41 H 1.09000 * 109.52670 * 63.24499 * 24 23 22 42 42 H 1.08993 * 109.48075 * 297.62612 * 25 24 23 43 43 H 1.09002 * 109.47751 * 177.58883 * 25 24 23 44 44 H 1.09009 * 109.48121 * 301.17746 * 27 26 25 45 45 H 1.09002 * 109.48524 * 181.14232 * 27 26 25 46 46 H 1.08998 * 109.52575 * 182.49151 * 28 27 26 47 47 H 1.09002 * 109.56881 * 62.33084 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0897 0.0000 4 6 3.6322 0.5854 -0.0006 5 6 4.8756 1.3805 -0.0003 6 8 4.8204 2.5941 0.0000 7 8 6.0717 0.7605 -0.0005 8 6 7.2523 1.6057 -0.0007 9 1 7.0296 2.5408 -0.5146 10 6 8.3770 0.8976 -0.7112 11 1 8.2202 -0.0892 -1.1213 12 6 9.6063 1.5091 -0.8370 13 7 9.7973 2.7105 -0.3373 14 14 11.0006 0.6310 -1.7171 15 1 10.5983 0.3426 -3.1172 16 1 12.2080 1.4956 -1.7174 17 1 11.3035 -0.6429 -1.0167 18 6 7.6672 1.9027 1.4418 19 6 6.9507 1.1359 2.5550 20 6 6.6537 2.6212 2.3346 21 7 3.5420 -0.7301 -0.0015 22 7 2.3079 -1.0872 -0.0009 23 6 1.8373 -2.4746 -0.0072 24 6 2.3672 -3.2009 1.2329 25 6 1.9363 -4.6690 1.1778 26 8 2.4235 -5.2621 -0.0276 27 6 1.9240 -4.6541 -1.2204 28 6 2.3543 -3.1854 -1.2617 29 1 -0.3634 -0.0008 1.0277 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3634 -0.8896 -0.5145 32 1 2.0052 2.1260 0.0008 33 1 10.6621 3.1409 -0.4261 34 1 8.7218 2.1354 1.5891 35 1 6.1840 0.4195 2.2598 36 1 7.5338 0.8644 3.4350 37 1 7.0415 3.3264 3.0698 38 1 5.6915 2.8827 1.8944 39 1 0.7474 -2.4899 -0.0025 40 1 3.4554 -3.1413 1.2529 41 1 1.9594 -2.7351 2.1300 42 1 0.8483 -4.7296 1.1987 43 1 2.3468 -5.2008 2.0363 44 1 0.8356 -4.7143 -1.2309 45 1 2.3255 -5.1750 -2.0896 46 1 1.9372 -2.7084 -2.1486 47 1 3.4422 -3.1244 -1.2927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772397891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:58 Heat of formation + Delta-G solvation = -29.496656 kcal Electronic energy + Delta-G solvation = -29573.539522 eV Core-core repulsion = 25531.232628 eV Total energy + Delta-G solvation = -4042.306894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -42.75351 -39.67025 -39.32000 -36.37373 -34.97575 -34.59805 -32.87892 -32.71459 -31.60070 -30.90090 -27.97472 -27.12005 -25.82077 -24.05409 -23.79945 -22.87366 -21.37365 -20.97041 -20.78040 -19.61763 -18.65920 -17.41473 -16.89834 -16.59810 -16.39687 -16.05600 -15.96728 -15.47374 -15.25412 -15.08721 -14.62679 -14.42320 -14.10731 -13.76464 -13.54805 -13.23617 -13.19938 -12.90007 -12.78386 -12.51217 -12.32665 -11.90910 -11.75322 -11.54619 -11.36803 -11.28828 -11.06723 -10.92539 -10.89171 -10.54390 -10.48632 -10.25585 -10.10708 -10.01282 -9.82228 -9.40333 -9.05726 -9.03369 -8.88809 -8.45505 -8.37369 -6.12484 -4.18911 1.73887 2.12678 2.28306 3.31576 3.34500 3.36923 3.45951 3.65233 3.75462 3.99704 4.18943 4.37673 4.38893 4.46745 4.47199 4.70882 4.73625 4.86511 4.94139 5.00238 5.06895 5.15852 5.20285 5.21163 5.24868 5.31484 5.50932 5.53088 5.63233 5.73715 5.80622 5.91968 5.92305 5.94189 6.16692 6.22488 6.47887 6.55182 6.75480 6.75611 6.78889 6.95808 7.10549 7.26194 7.62851 7.64601 7.87216 8.02430 8.18339 8.69788 8.95225 9.44960 10.94832 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.003390 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.853146 B = 8257.985375 C = 9450.356352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.001 4.001 3 C -0.176 4.176 4 C 0.010 3.990 5 C 0.541 3.459 6 O -0.508 6.508 7 O -0.335 6.335 8 C 0.247 3.753 9 H 0.053 0.947 10 C -0.516 4.516 11 H 0.070 0.930 12 C 0.065 3.935 13 N -0.886 5.886 14 Si 0.910 3.090 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.115 4.115 19 C -0.194 4.194 20 C -0.210 4.210 21 N -0.226 5.226 22 N -0.279 5.279 23 C 0.152 3.848 24 C -0.168 4.168 25 C 0.067 3.933 26 O -0.377 6.377 27 C 0.067 3.933 28 C -0.169 4.169 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.266 0.734 34 H 0.130 0.870 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.103 0.897 44 H 0.053 0.947 45 H 0.104 0.896 46 H 0.082 0.918 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.743 -12.105 1.891 24.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C -0.204 4.204 4 C -0.149 4.149 5 C 0.383 3.617 6 O -0.396 6.396 7 O -0.249 6.249 8 C 0.195 3.805 9 H 0.071 0.929 10 C -0.554 4.554 11 H 0.088 0.912 12 C -0.138 4.138 13 N -0.524 5.524 14 Si 0.736 3.264 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.134 4.134 19 C -0.231 4.231 20 C -0.247 4.247 21 N -0.061 5.061 22 N -0.069 5.069 23 C 0.051 3.949 24 C -0.206 4.206 25 C -0.011 4.011 26 O -0.296 6.296 27 C -0.010 4.010 28 C -0.207 4.207 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.076 0.924 34 H 0.148 0.852 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.121 0.879 44 H 0.072 0.928 45 H 0.122 0.878 46 H 0.100 0.900 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.794 -12.811 1.908 24.498 hybrid contribution 0.198 0.885 -0.282 0.950 sum -20.597 -11.926 1.626 23.856 Atomic orbital electron populations 1.20320 0.86882 1.03623 1.03095 1.21342 0.95279 0.86728 1.08996 1.21495 0.90236 0.99568 1.09087 1.21140 0.93223 0.89570 1.10957 1.19545 0.83741 0.85284 0.73088 1.90773 1.87887 1.14197 1.46731 1.86647 1.14417 1.42724 1.81135 1.20195 0.77799 0.90684 0.91864 0.92917 1.20916 0.94551 1.03864 1.36032 0.91182 1.24885 0.98349 0.94998 0.95562 1.69976 1.24393 1.13418 1.44590 0.86369 0.80543 0.79365 0.80079 1.19993 1.21073 1.19914 1.23014 0.98952 0.99611 0.91817 1.22797 1.04673 0.94283 1.01355 1.23149 1.02566 0.94107 1.04880 1.73752 1.00717 1.14832 1.16849 1.45664 1.03026 1.06625 1.51549 1.21584 0.99211 0.76472 0.97603 1.22622 1.04773 0.96314 0.96911 1.22571 0.98331 0.91886 0.88265 1.88003 1.70894 1.57082 1.13582 1.22570 0.98189 0.91694 0.88585 1.22636 1.04883 0.96422 0.96792 0.90486 0.89529 0.91492 0.82016 0.92400 0.85225 0.89765 0.90501 0.90522 0.88860 0.87497 0.88558 0.89975 0.92834 0.87851 0.92838 0.87838 0.89967 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 9.92 36.00 0.36 -0.20 16 2 C 0.00 -0.01 6.92 -82.21 -0.57 -0.58 16 3 C -0.18 -2.70 10.73 -39.35 -0.42 -3.12 16 4 C 0.01 0.19 7.17 -82.79 -0.59 -0.41 16 5 C 0.54 12.55 6.92 34.54 0.24 12.79 16 6 O -0.51 -12.51 14.02 -19.26 -0.27 -12.78 16 7 O -0.33 -8.55 8.39 -40.57 -0.34 -8.89 16 8 C 0.25 6.83 2.41 -27.88 -0.07 6.76 16 9 H 0.05 1.60 7.16 -51.93 -0.37 1.23 16 10 C -0.52 -14.85 8.90 -34.44 -0.31 -15.15 16 11 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 12 C 0.06 1.80 5.20 -17.82 -0.09 1.71 16 13 N -0.89 -25.46 11.59 55.43 0.64 -24.82 16 14 Si 0.91 21.50 29.54 -169.99 -5.02 16.47 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 C -0.12 -2.98 5.27 -90.62 -0.48 -3.45 16 19 C -0.19 -4.37 9.80 -26.70 -0.26 -4.63 16 20 C -0.21 -4.82 9.85 -26.70 -0.26 -5.09 16 21 N -0.23 -3.97 11.56 33.41 0.39 -3.59 16 22 N -0.28 -3.64 3.05 -50.49 -0.15 -3.80 16 23 C 0.15 1.39 2.91 -67.75 -0.20 1.19 16 24 C -0.17 -1.51 5.60 -26.59 -0.15 -1.66 16 25 C 0.07 0.48 6.84 37.21 0.25 0.73 16 26 O -0.38 -3.56 10.76 -35.23 -0.38 -3.94 16 27 C 0.07 0.48 6.84 37.21 0.25 0.74 16 28 C -0.17 -1.54 5.61 -26.59 -0.15 -1.69 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.33 7.03 -51.93 -0.36 -0.03 16 32 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.13 3.60 6.46 -51.93 -0.34 3.26 16 35 H 0.08 1.93 6.91 -51.93 -0.36 1.57 16 36 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.09 2.22 5.36 -51.93 -0.28 1.94 16 39 H 0.11 0.64 6.55 -51.93 -0.34 0.30 16 40 H 0.10 1.16 8.09 -51.93 -0.42 0.74 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.27 8.14 -51.92 -0.42 -0.16 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -33.76 382.38 -8.90 -42.66 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.09 Total: 4.95 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -2.44 Total: -12.06 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.87 Total: -32.20 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.99 Total: -25.60 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.76 -8.90 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772397891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.168 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds