Wall clock time and date at job start Tue Mar 31 2020 20:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35349 * 126.37669 * 2 1 4 4 C 1.41547 * 105.50124 * 180.02562 * 3 2 1 5 5 C 1.47582 * 126.52527 * 180.02562 * 4 3 2 6 6 O 1.21487 * 119.99885 * 359.97008 * 5 4 3 7 7 O 1.34730 * 120.00155 * 179.97438 * 5 4 3 8 8 C 1.45197 * 117.00217 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47155 * 330.00396 * 8 7 5 10 10 C 1.50698 * 109.47572 * 210.00057 * 8 7 5 11 11 H 1.08007 * 119.99767 * 359.97438 * 10 8 7 12 12 C 1.37871 * 120.00155 * 180.02562 * 10 8 7 13 13 N 1.31516 * 120.00231 * 359.97438 * 12 10 8 14 14 Si 1.86807 * 119.99980 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47134 * 59.99438 * 14 12 10 16 16 H 1.48503 * 109.47022 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46837 * 299.99642 * 14 12 10 18 18 C 1.53007 * 109.46983 * 89.99906 * 8 7 5 19 19 C 1.52997 * 117.49590 * 8.74688 * 18 8 7 20 20 C 1.53000 * 117.49722 * 300.08997 * 18 8 7 21 21 N 1.31854 * 106.95296 * 0.02562 * 4 3 2 22 22 N 1.28474 * 110.06099 * 359.97438 * 21 4 3 23 23 C 1.46501 * 124.87617 * 179.73381 * 22 21 4 24 24 C 1.53178 * 109.54151 * 59.58597 * 23 22 21 25 25 C 1.53101 * 109.16189 * 183.14943 * 24 23 22 26 26 O 1.42900 * 109.41312 * 57.60589 * 25 24 23 27 27 C 1.42897 * 114.10269 * 298.84436 * 26 25 24 28 28 C 1.53095 * 109.41847 * 61.15498 * 27 26 25 29 29 H 1.09003 * 109.47629 * 269.95721 * 1 2 3 30 30 H 1.09003 * 109.47576 * 29.96395 * 1 2 3 31 31 H 1.09004 * 109.47202 * 149.95953 * 1 2 3 32 32 H 1.08001 * 127.25038 * 0.05258 * 3 2 1 33 33 H 0.97001 * 120.00137 * 180.02562 * 13 12 10 34 34 H 1.08997 * 115.54814 * 154.41750 * 18 8 7 35 35 H 1.08998 * 117.49952 * 0.02562 * 19 18 8 36 36 H 1.09005 * 117.49635 * 145.01691 * 19 18 8 37 37 H 1.09000 * 117.49712 * 214.97579 * 20 18 8 38 38 H 1.08999 * 117.50136 * 359.97319 * 20 18 8 39 39 H 1.09002 * 109.54193 * 179.85082 * 23 22 21 40 40 H 1.08999 * 109.52536 * 303.05275 * 24 23 22 41 41 H 1.09000 * 109.52670 * 63.24499 * 24 23 22 42 42 H 1.08993 * 109.48075 * 297.62612 * 25 24 23 43 43 H 1.09002 * 109.47751 * 177.58883 * 25 24 23 44 44 H 1.09009 * 109.48121 * 301.17746 * 27 26 25 45 45 H 1.09002 * 109.48524 * 181.14232 * 27 26 25 46 46 H 1.08998 * 109.52575 * 182.49151 * 28 27 26 47 47 H 1.09002 * 109.56881 * 62.33084 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0897 0.0000 4 6 3.6322 0.5854 -0.0006 5 6 4.8756 1.3805 -0.0003 6 8 4.8204 2.5941 0.0000 7 8 6.0717 0.7605 -0.0005 8 6 7.2523 1.6057 -0.0007 9 1 7.0296 2.5408 -0.5146 10 6 8.3770 0.8976 -0.7112 11 1 8.2202 -0.0892 -1.1213 12 6 9.6063 1.5091 -0.8370 13 7 9.7973 2.7105 -0.3373 14 14 11.0006 0.6310 -1.7171 15 1 10.5983 0.3426 -3.1172 16 1 12.2080 1.4956 -1.7174 17 1 11.3035 -0.6429 -1.0167 18 6 7.6672 1.9027 1.4418 19 6 6.9507 1.1359 2.5550 20 6 6.6537 2.6212 2.3346 21 7 3.5420 -0.7301 -0.0015 22 7 2.3079 -1.0872 -0.0009 23 6 1.8373 -2.4746 -0.0072 24 6 2.3672 -3.2009 1.2329 25 6 1.9363 -4.6690 1.1778 26 8 2.4235 -5.2621 -0.0276 27 6 1.9240 -4.6541 -1.2204 28 6 2.3543 -3.1854 -1.2617 29 1 -0.3634 -0.0008 1.0277 30 1 -0.3634 0.8903 -0.5133 31 1 -0.3634 -0.8896 -0.5145 32 1 2.0052 2.1260 0.0008 33 1 10.6621 3.1409 -0.4261 34 1 8.7218 2.1354 1.5891 35 1 6.1840 0.4195 2.2598 36 1 7.5338 0.8644 3.4350 37 1 7.0415 3.3264 3.0698 38 1 5.6915 2.8827 1.8944 39 1 0.7474 -2.4899 -0.0025 40 1 3.4554 -3.1413 1.2529 41 1 1.9594 -2.7351 2.1300 42 1 0.8483 -4.7296 1.1987 43 1 2.3468 -5.2008 2.0363 44 1 0.8356 -4.7143 -1.2309 45 1 2.3255 -5.1750 -2.0896 46 1 1.9372 -2.7084 -2.1486 47 1 3.4422 -3.1244 -1.2927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772397891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:56 Heat of formation + Delta-G solvation = -50.325013 kcal Electronic energy + Delta-G solvation = -29574.442708 eV Core-core repulsion = 25531.232628 eV Total energy + Delta-G solvation = -4043.210079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -43.89343 -41.35205 -40.21065 -38.29362 -36.54853 -35.84417 -34.90808 -33.77444 -32.21396 -31.98280 -30.02737 -27.99037 -27.01831 -25.43209 -24.68729 -24.42963 -23.25010 -22.27280 -21.78139 -21.14644 -20.33898 -18.89692 -18.35027 -18.05145 -17.72088 -17.34254 -17.20677 -16.74955 -16.65348 -16.22959 -15.81379 -15.65852 -15.43945 -14.90518 -14.68591 -14.37018 -14.27842 -14.12336 -13.75918 -13.63188 -13.42299 -13.33868 -13.27669 -13.04735 -12.81200 -12.55163 -12.43142 -12.39952 -12.25695 -12.06506 -12.01124 -11.90071 -11.68836 -11.40780 -11.38541 -11.10186 -10.70400 -10.52042 -10.48014 -10.22659 -9.97072 -8.28786 -6.45664 0.28945 1.00803 1.27567 1.39316 1.43294 1.51337 1.99330 2.11714 2.40131 2.92104 2.97796 3.10385 3.16439 3.49077 3.60917 3.62813 3.81313 3.84125 4.00367 4.01779 4.20347 4.21644 4.23847 4.24194 4.34736 4.49746 4.51382 4.52258 4.61454 4.69959 4.77195 4.78919 4.82952 4.92005 4.96370 4.97083 4.99092 5.04796 5.18551 5.19227 5.24781 5.25904 5.46145 5.52499 5.79613 5.85252 6.04155 6.22066 6.55093 6.73875 7.00195 7.24275 8.78781 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.003390 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.853146 B = 8257.985375 C = 9450.356352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.028 3.972 3 C -0.197 4.197 4 C -0.032 4.032 5 C 0.536 3.464 6 O -0.534 6.534 7 O -0.347 6.347 8 C 0.253 3.747 9 H 0.009 0.991 10 C -0.548 4.548 11 H 0.061 0.939 12 C 0.023 3.977 13 N -0.910 5.910 14 Si 0.980 3.020 15 H -0.270 1.270 16 H -0.272 1.272 17 H -0.266 1.266 18 C -0.143 4.143 19 C -0.169 4.169 20 C -0.196 4.196 21 N -0.255 5.255 22 N -0.266 5.266 23 C 0.142 3.858 24 C -0.165 4.165 25 C 0.069 3.931 26 O -0.405 6.405 27 C 0.069 3.931 28 C -0.167 4.167 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.169 0.831 33 H 0.271 0.729 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.158 0.842 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.092 0.908 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.849 -14.185 2.370 28.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 C -0.224 4.224 4 C -0.187 4.187 5 C 0.381 3.619 6 O -0.424 6.424 7 O -0.263 6.263 8 C 0.200 3.800 9 H 0.027 0.973 10 C -0.586 4.586 11 H 0.079 0.921 12 C -0.178 4.178 13 N -0.548 5.548 14 Si 0.802 3.198 15 H -0.195 1.195 16 H -0.197 1.197 17 H -0.190 1.190 18 C -0.162 4.162 19 C -0.206 4.206 20 C -0.233 4.233 21 N -0.093 5.093 22 N -0.056 5.056 23 C 0.043 3.957 24 C -0.204 4.204 25 C -0.008 4.008 26 O -0.324 6.324 27 C -0.008 4.008 28 C -0.205 4.205 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.187 0.813 33 H 0.081 0.919 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.175 0.825 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.109 0.891 45 H 0.125 0.875 46 H 0.110 0.890 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.916 -14.898 2.394 28.278 hybrid contribution 1.027 1.482 -0.441 1.857 sum -22.888 -13.415 1.953 26.602 Atomic orbital electron populations 1.20614 0.82175 1.05871 1.05208 1.22106 0.97544 0.84908 1.04988 1.21724 0.88929 1.01194 1.10562 1.20850 0.92593 0.90525 1.14776 1.20221 0.84071 0.85620 0.72011 1.90724 1.88198 1.15351 1.48089 1.86633 1.15079 1.42715 1.81824 1.19837 0.78457 0.88984 0.92715 0.97334 1.21155 0.95901 1.03900 1.37615 0.92118 1.25775 1.00550 0.95636 0.95831 1.70092 1.25207 1.14579 1.44875 0.85295 0.77193 0.78459 0.78821 1.19463 1.19711 1.19031 1.22727 0.98421 1.03240 0.91796 1.22811 1.03520 0.93805 1.00504 1.23138 1.01043 0.95068 1.04008 1.73669 1.03600 1.14140 1.17845 1.46151 1.01849 1.08548 1.49101 1.22152 1.01775 0.74232 0.97538 1.22594 1.02157 0.98216 0.97400 1.22708 1.00394 0.89998 0.87715 1.87976 1.71973 1.57645 1.14784 1.22698 1.00250 0.89742 0.88082 1.22611 1.02203 0.98403 0.97323 0.88205 0.88204 0.88379 0.81339 0.91950 0.87237 0.90487 0.87608 0.88110 0.89987 0.82497 0.92843 0.88851 0.89155 0.87429 0.89117 0.87514 0.88964 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.92 71.23 0.71 0.02 16 2 C 0.03 0.62 6.92 41.40 0.29 0.90 16 3 C -0.20 -6.03 10.73 22.42 0.24 -5.78 16 4 C -0.03 -1.28 7.17 42.42 0.30 -0.97 16 5 C 0.54 26.75 6.92 70.29 0.49 27.23 16 6 O -0.53 -28.32 14.02 19.88 0.28 -28.04 16 7 O -0.35 -19.13 8.39 -56.40 -0.47 -19.61 16 8 C 0.25 15.00 2.41 29.85 0.07 15.07 16 9 H 0.01 0.59 7.16 -2.39 -0.02 0.57 16 10 C -0.55 -33.36 8.90 25.60 0.23 -33.13 16 11 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 12 C 0.02 1.30 5.20 84.65 0.44 1.74 16 13 N -0.91 -54.13 11.59 21.45 0.25 -53.89 16 14 Si 0.98 44.97 29.54 68.60 2.03 47.00 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 C -0.14 -7.74 5.27 -10.79 -0.06 -7.80 16 19 C -0.17 -7.77 9.80 30.62 0.30 -7.47 16 20 C -0.20 -9.22 9.85 30.62 0.30 -8.91 16 21 N -0.26 -9.31 11.56 -48.22 -0.56 -9.87 16 22 N -0.27 -6.61 3.05 -313.64 -0.96 -7.56 16 23 C 0.14 2.20 2.91 45.11 0.13 2.33 16 24 C -0.17 -2.71 5.60 30.69 0.17 -2.54 16 25 C 0.07 0.79 6.84 72.02 0.49 1.28 16 26 O -0.40 -6.85 10.76 -148.98 -1.60 -8.45 16 27 C 0.07 0.81 6.84 72.01 0.49 1.30 16 28 C -0.17 -2.80 5.61 30.69 0.17 -2.63 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.30 7.03 -2.38 -0.02 0.29 16 32 H 0.17 4.72 8.06 -2.91 -0.02 4.70 16 33 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.11 6.36 6.46 -2.39 -0.02 6.34 16 35 H 0.08 3.64 6.91 -2.39 -0.02 3.62 16 36 H 0.11 4.21 8.14 -2.38 -0.02 4.19 16 37 H 0.10 4.21 8.14 -2.39 -0.02 4.19 16 38 H 0.08 4.07 5.36 -2.39 -0.01 4.06 16 39 H 0.16 0.93 6.55 -2.39 -0.02 0.91 16 40 H 0.05 1.34 8.09 -2.39 -0.02 1.33 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 45 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 Total: -1.00 -81.81 382.38 4.71 -77.10 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.98 Total: 22.69 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 4.77 Total: -19.37 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.27 Total: -71.32 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: -1.80 Total: -56.10 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -81.81 4.71 -77.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772397891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.776 kcal (2) G-P(sol) polarization free energy of solvation -81.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds