Wall clock time and date at job start Tue Mar 31 2020 19:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 116.99850 * 2 1 4 4 C 1.38786 * 119.93623 * 359.97438 * 3 2 1 5 5 C 1.38305 * 120.01681 * 180.43360 * 4 3 2 6 6 C 1.37969 * 119.71894 * 0.02562 * 5 4 3 7 7 C 1.38255 * 120.63347 * 359.14768 * 6 5 4 8 8 C 1.38661 * 119.93325 * 180.02562 * 3 2 1 9 9 O 1.36039 * 120.10053 * 181.81091 * 7 6 5 10 10 C 1.43320 * 115.33253 * 68.99106 * 9 7 6 11 11 C 1.52999 * 109.23031 * 34.91639 * 10 9 7 12 12 C 1.53000 * 109.23342 * 154.28955 * 10 9 7 13 13 C 1.51364 * 110.69898 * 274.60507 * 10 9 7 14 14 N 1.46021 * 113.61346 * 65.01999 * 13 10 9 15 15 C 1.46897 * 110.99844 * 165.92136 * 14 13 10 16 16 C 1.50702 * 109.47152 * 189.99490 * 15 14 13 17 17 O 1.21290 * 119.99925 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99822 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99790 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00432 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00307 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00409 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99787 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47102 * 90.00028 * 23 21 19 25 25 H 1.48496 * 109.47138 * 210.00221 * 23 21 19 26 26 H 1.48497 * 109.46850 * 330.00378 * 23 21 19 27 27 C 1.46693 * 112.61443 * 291.07434 * 14 13 10 28 28 H 1.09005 * 109.47055 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46853 * 299.99280 * 1 2 3 30 30 H 1.08998 * 109.47276 * 60.00019 * 1 2 3 31 31 H 1.08000 * 119.99401 * 0.43102 * 4 3 2 32 32 H 1.08000 * 120.14348 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.16938 * 359.92365 * 8 3 2 34 34 H 1.08996 * 109.47119 * 60.00169 * 11 10 9 35 35 H 1.09000 * 109.47317 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47344 * 299.99950 * 11 10 9 37 37 H 1.09002 * 109.47018 * 60.00282 * 12 10 9 38 38 H 1.09001 * 109.46854 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.47041 * 300.00202 * 12 10 9 40 40 H 1.08992 * 108.65743 * 186.08563 * 13 10 9 41 41 H 1.09000 * 108.65381 * 304.08863 * 13 10 9 42 42 H 1.09000 * 109.47398 * 310.00363 * 15 14 13 43 43 H 1.09003 * 109.46948 * 70.00083 * 15 14 13 44 44 H 0.96995 * 120.00731 * 0.02562 * 18 16 15 45 45 H 0.97001 * 120.00050 * 179.97438 * 22 21 19 46 46 H 1.08991 * 109.58556 * 324.69081 * 27 14 13 47 47 H 1.09002 * 109.57799 * 204.27943 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2887 2.3740 -0.0005 5 6 1.9148 3.6072 -0.0096 6 6 3.2928 3.6746 -0.0186 7 6 4.0547 2.5210 -0.0010 8 6 3.4307 1.2819 -0.0005 9 8 5.4125 2.6005 0.0271 10 6 5.9723 3.1018 1.2474 11 6 5.1190 2.6276 2.4255 12 6 7.3953 2.5630 1.4079 13 6 6.0104 4.6149 1.2367 14 7 4.6877 5.2331 1.2116 15 6 4.7690 6.6636 1.5357 16 6 3.3804 7.2117 1.7415 17 8 2.4177 6.4824 1.6295 18 7 3.2082 8.5124 2.0498 19 6 1.9449 9.0109 2.2375 20 1 1.0877 8.3616 2.1378 21 6 1.7673 10.3520 2.5548 22 7 0.5564 10.8300 2.7342 23 14 3.2498 11.4755 2.7266 24 1 3.5640 12.0852 1.4095 25 1 2.9475 12.5473 3.7088 26 1 4.4165 10.6868 3.1978 27 6 3.9902 5.0214 -0.0614 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 0.2103 2.3161 0.0061 32 1 1.3276 4.5136 -0.0096 33 1 4.0206 0.3772 0.0003 34 1 5.1065 1.5379 2.4497 35 1 5.5417 3.0064 3.3561 36 1 4.1012 3.0001 2.3102 37 1 8.0046 2.8895 0.5651 38 1 7.8247 2.9417 2.3354 39 1 7.3701 1.4737 1.4377 40 1 6.5381 4.9568 2.1270 41 1 6.5635 4.9435 0.3568 42 1 5.3512 6.7970 2.4475 43 1 5.2516 7.1951 0.7155 44 1 3.9779 9.0958 2.1390 45 1 0.4324 11.7661 2.9562 46 1 4.7105 5.0340 -0.8793 47 1 3.2525 5.8101 -0.2094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421046042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:18 Heat of formation + Delta-G solvation = -60.486737 kcal Electronic energy + Delta-G solvation = -30065.661969 eV Core-core repulsion = 26022.011244 eV Total energy + Delta-G solvation = -4043.650725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.92544 -39.46407 -38.52713 -36.79172 -36.14746 -33.95440 -33.29028 -31.72056 -31.09447 -29.79498 -27.96470 -27.65737 -27.16554 -25.97311 -24.67646 -22.86688 -22.54384 -20.81163 -20.10483 -19.31980 -18.28591 -17.95698 -16.75858 -16.48258 -16.01898 -15.78349 -15.73682 -15.35810 -15.14326 -14.76621 -14.31748 -14.19878 -14.11973 -13.81727 -13.46875 -13.24152 -13.12098 -12.70155 -12.62129 -12.36745 -12.29500 -12.15376 -12.11128 -11.92032 -11.84824 -11.62019 -11.28082 -11.25806 -11.05986 -10.98272 -10.72740 -10.61641 -10.56083 -10.00314 -9.91453 -9.54519 -8.56032 -8.52516 -8.18938 -8.02171 -7.87982 -6.32866 -3.84081 1.33477 1.58604 3.00983 3.05026 3.10748 3.13701 3.55484 3.71832 3.77852 4.08501 4.20997 4.75334 4.78602 4.89060 4.90972 4.95648 5.06700 5.08253 5.12149 5.16333 5.20073 5.35615 5.37239 5.39250 5.48758 5.52249 5.59066 5.59553 5.66354 5.76850 5.78959 5.86719 5.90521 5.94264 6.00010 6.11492 6.17623 6.35816 6.43250 6.55489 6.63695 6.85298 7.15923 7.29880 7.36970 7.57010 7.64278 8.12390 8.58556 8.93558 9.40879 9.81545 10.80215 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013173 B = 0.003535 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.975790 B = 7918.273460 C = 9651.643382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.133 3.867 4 C -0.219 4.219 5 C -0.033 4.033 6 C -0.122 4.122 7 C 0.147 3.853 8 C -0.174 4.174 9 O -0.324 6.324 10 C 0.121 3.879 11 C -0.171 4.171 12 C -0.139 4.139 13 C 0.043 3.957 14 N -0.520 5.520 15 C 0.047 3.953 16 C 0.452 3.548 17 O -0.555 6.555 18 N -0.591 5.591 19 C -0.303 4.303 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.106 3.894 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.041 0.959 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.165 -16.654 -4.325 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.088 3.912 4 C -0.237 4.237 5 C -0.052 4.052 6 C -0.124 4.124 7 C 0.103 3.897 8 C -0.193 4.193 9 O -0.241 6.241 10 C 0.084 3.916 11 C -0.229 4.229 12 C -0.197 4.197 13 C -0.086 4.086 14 N -0.244 5.244 15 C -0.084 4.084 16 C 0.237 3.763 17 O -0.436 6.436 18 N -0.231 5.231 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.522 5.522 23 Si 0.705 3.295 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.021 4.021 28 H 0.115 0.885 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.202 0.798 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.320 -17.409 -4.130 20.174 hybrid contribution 1.174 1.741 -0.152 2.106 sum 10.494 -15.668 -4.281 19.337 Atomic orbital electron populations 1.23032 0.78478 1.03571 1.01608 1.86016 1.21292 1.27120 1.89024 1.18688 0.91578 0.84053 0.96900 1.21277 1.00016 0.92186 1.10270 1.20848 0.93448 0.97416 0.93452 1.20050 0.93858 0.94484 1.03982 1.17915 0.82937 0.91299 0.97595 1.20207 0.91431 0.97608 1.10042 1.86301 1.16563 1.84690 1.36558 1.21523 0.93981 0.92255 0.83831 1.22407 1.02284 1.00787 0.97389 1.21816 0.93472 1.01967 1.02403 1.22119 0.90285 0.94500 1.01653 1.60385 1.18264 1.12302 1.33468 1.21869 0.97380 0.87938 1.01184 1.19610 0.90002 0.82576 0.84078 1.90542 1.41427 1.57316 1.54360 1.42218 1.08393 1.08533 1.63973 1.19405 0.84186 0.94705 1.44878 0.86265 1.25030 0.96702 0.96818 0.97590 1.69618 1.20271 1.15199 1.47092 0.86687 0.82463 0.81423 0.78902 1.19691 1.20220 1.19499 1.21169 0.97249 0.95161 0.88536 0.88521 0.92507 0.92641 0.85466 0.84373 0.85175 0.92560 0.91516 0.89855 0.91744 0.90689 0.91424 0.89901 0.94500 0.89166 0.93289 0.79772 0.91636 0.94103 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.11 10.49 -19.42 -0.20 -4.31 16 3 C 0.13 1.89 6.68 -39.22 -0.26 1.63 16 4 C -0.22 -3.14 9.04 -39.35 -0.36 -3.50 16 5 C -0.03 -0.54 9.69 -39.66 -0.38 -0.92 16 6 C -0.12 -2.02 4.71 -104.21 -0.49 -2.51 16 7 C 0.15 2.26 3.99 -39.39 -0.16 2.10 16 8 C -0.17 -2.53 9.88 -39.24 -0.39 -2.92 16 9 O -0.32 -4.72 9.64 -19.86 -0.19 -4.91 16 10 C 0.12 1.50 1.08 -91.45 -0.10 1.41 16 11 C -0.17 -2.23 7.53 37.16 0.28 -1.95 16 12 C -0.14 -1.28 8.77 37.16 0.33 -0.96 16 13 C 0.04 0.55 3.91 -5.13 -0.02 0.53 16 14 N -0.52 -8.29 3.42 -238.85 -0.82 -9.11 16 15 C 0.05 0.77 5.44 -4.98 -0.03 0.74 16 16 C 0.45 9.77 7.19 -10.99 -0.08 9.69 16 17 O -0.55 -13.81 14.12 5.55 0.08 -13.73 16 18 N -0.59 -13.60 5.09 -10.96 -0.06 -13.65 16 19 C -0.30 -8.33 10.16 -14.93 -0.15 -8.48 16 20 H 0.12 3.74 7.39 -52.49 -0.39 3.35 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.39 13.96 55.50 0.77 -24.62 16 23 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 27 C 0.11 1.76 4.56 -4.58 -0.02 1.74 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 30 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 31 H 0.13 1.55 6.28 -52.49 -0.33 1.22 16 32 H 0.14 2.41 7.99 -52.49 -0.42 1.99 16 33 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.35 6.01 -51.93 -0.31 1.04 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.91 7.74 -51.93 -0.40 0.51 16 41 H 0.04 0.46 7.89 -51.93 -0.41 0.05 16 42 H 0.09 1.27 7.83 -51.93 -0.41 0.87 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.37 7.50 5.76 -40.82 -0.24 7.27 16 45 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.04 0.64 7.75 -51.93 -0.40 0.24 16 47 H 0.10 1.90 5.64 -51.93 -0.29 1.61 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -32.00 372.09 -7.40 -39.40 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.94 Total: 12.10 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.93 Total: -1.12 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.10 Total: -47.39 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.32 Total: -22.95 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.00 -7.40 -39.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421046042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.084 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds