Wall clock time and date at job start Tue Mar 31 2020 17:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40364 * 126.43774 * 2 1 4 4 C 1.36556 * 106.70484 * 179.89873 * 3 2 1 5 5 C 1.46653 * 125.98532 * 180.11370 * 4 3 2 6 6 O 1.21692 * 120.00302 * 353.01132 * 5 4 3 7 7 N 1.34778 * 119.99633 * 173.01884 * 5 4 3 8 8 C 1.46837 * 120.40906 * 2.57900 * 7 5 4 9 9 C 1.52912 * 109.49941 * 232.18790 * 8 7 5 10 10 C 1.52785 * 108.89050 * 306.41840 * 9 8 7 11 11 H 1.08996 * 108.94995 * 302.95301 * 10 9 8 12 12 O 1.42596 * 111.12168 * 182.41792 * 10 9 8 13 13 C 1.43148 * 113.63183 * 176.37393 * 12 10 9 14 14 C 1.53197 * 109.73541 * 61.69473 * 13 12 10 15 15 N 1.47356 * 108.79917 * 308.78119 * 14 13 12 16 16 C 1.36936 * 121.29933 * 230.21371 * 15 14 13 17 17 H 1.07999 * 119.99536 * 150.94888 * 16 15 14 18 18 C 1.38810 * 120.00510 * 330.95511 * 16 15 14 19 19 N 1.31618 * 119.99577 * 351.20216 * 18 16 15 20 20 Si 1.86792 * 120.00046 * 171.20519 * 18 16 15 21 21 H 1.48498 * 109.47559 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47323 * 119.99991 * 20 18 16 23 23 H 1.48505 * 109.46941 * 239.99742 * 20 18 16 24 24 C 1.46869 * 117.39518 * 50.24205 * 15 14 13 25 25 H 1.09004 * 109.65916 * 68.35425 * 24 15 14 26 26 C 1.47130 * 120.40704 * 182.86502 * 7 5 4 27 27 O 1.34912 * 108.01949 * 0.36079 * 4 3 2 28 28 C 1.33932 * 109.38958 * 359.76972 * 27 4 3 29 29 C 1.50696 * 125.61673 * 179.97438 * 28 27 4 30 30 H 1.08996 * 109.46899 * 269.69029 * 1 2 3 31 31 H 1.08997 * 109.46790 * 149.69023 * 1 2 3 32 32 H 1.09000 * 109.47123 * 29.69240 * 1 2 3 33 33 H 1.07996 * 126.65127 * 0.02886 * 3 2 1 34 34 H 1.08997 * 109.50828 * 352.18250 * 8 7 5 35 35 H 1.08997 * 109.50659 * 112.31548 * 8 7 5 36 36 H 1.08997 * 109.65588 * 186.52675 * 9 8 7 37 37 H 1.08999 * 109.42427 * 66.16942 * 9 8 7 38 38 H 1.08993 * 109.42858 * 301.61047 * 13 12 10 39 39 H 1.09004 * 109.38273 * 181.74684 * 13 12 10 40 40 H 1.09001 * 109.58036 * 188.98850 * 14 13 12 41 41 H 1.08996 * 109.58522 * 68.57498 * 14 13 12 42 42 H 0.97003 * 119.99956 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.72619 * 246.43722 * 26 7 5 44 44 H 1.09001 * 109.72650 * 7.10725 * 26 7 5 45 45 H 1.09000 * 109.47171 * 270.00287 * 29 28 27 46 46 H 1.09005 * 109.47285 * 29.99575 * 29 28 27 47 47 H 1.09001 * 109.47245 * 150.00079 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6261 0.6682 0.0023 5 6 4.8379 1.4942 0.0055 6 8 4.7518 2.7014 -0.1219 7 7 6.0469 0.9163 0.1495 8 6 6.1658 -0.5440 0.2471 9 6 6.9818 -0.9078 1.4881 10 6 8.3106 -0.1551 1.4446 11 1 8.8285 -0.4044 0.5185 12 8 9.1348 -0.5030 2.5550 13 6 10.4281 0.1099 2.5240 14 6 10.2796 1.6339 2.5735 15 7 9.3237 2.0519 1.5329 16 6 9.6269 3.0532 0.6493 17 1 9.1927 3.0504 -0.3396 18 6 10.4922 4.0717 1.0245 19 7 10.8848 4.1736 2.2766 20 14 11.0992 5.2974 -0.2476 21 1 10.5156 4.9662 -1.5723 22 1 10.6848 6.6674 0.1479 23 1 12.5806 5.2328 -0.3297 24 6 8.0329 1.3532 1.4809 25 1 7.4430 1.6066 2.3618 26 6 7.2633 1.7413 0.2170 27 8 3.5858 -0.6803 -0.0044 28 6 2.3097 -1.0870 -0.0058 29 6 1.8456 -2.5207 -0.0133 30 1 -0.3633 -0.0056 1.0276 31 1 -0.3633 -0.8872 -0.5186 32 1 -0.3633 0.8927 -0.5090 33 1 2.0266 2.1625 0.0004 34 1 5.1724 -0.9858 0.3239 35 1 6.6682 -0.9284 -0.6406 36 1 7.1703 -1.9813 1.5011 37 1 6.4287 -0.6211 2.3824 38 1 10.9422 -0.1746 1.6060 39 1 11.0083 -0.2259 3.3835 40 1 11.2470 2.1013 2.3900 41 1 9.9071 1.9330 3.5532 42 1 11.4892 4.8856 2.5389 43 1 7.8819 1.5573 -0.6614 44 1 6.9908 2.7957 0.2615 45 1 1.7331 -2.8608 -1.0428 46 1 2.5807 -3.1433 0.4966 47 1 0.8872 -2.5950 0.5007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074216708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:42 Heat of formation + Delta-G solvation = -24.327056 kcal Electronic energy + Delta-G solvation = -30187.610429 eV Core-core repulsion = 26145.527706 eV Total energy + Delta-G solvation = -4042.082723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.93519 -39.97102 -38.48766 -36.20648 -34.78256 -34.57709 -32.27877 -31.71620 -31.41477 -29.92502 -28.95079 -27.50105 -26.42481 -24.99401 -23.94069 -22.53033 -21.86699 -21.35110 -20.53089 -19.74417 -19.29544 -17.24672 -16.80540 -16.65173 -16.27171 -15.57827 -15.39485 -15.16591 -14.96919 -14.49836 -14.08036 -13.98329 -13.75133 -13.68980 -13.43548 -13.41121 -13.20178 -13.08737 -12.98336 -12.83063 -12.59038 -12.54945 -12.24239 -11.86049 -11.63896 -11.31860 -11.01531 -10.94876 -10.75012 -10.57079 -10.26547 -10.18119 -10.07780 -9.96304 -9.82438 -9.60805 -8.99484 -8.61606 -8.56151 -8.32504 -6.71492 -5.83633 -3.33278 1.00437 2.15231 2.43747 3.09428 3.27977 3.35047 3.43136 3.44801 4.25942 4.36227 4.42178 4.56280 4.59256 4.93962 4.95945 5.08429 5.10254 5.21472 5.27914 5.33432 5.36618 5.40829 5.43384 5.49996 5.59755 5.63538 5.69359 5.74266 5.76942 5.86096 5.92857 6.10024 6.11716 6.14577 6.27008 6.31884 6.34007 6.46324 6.59875 6.65695 6.82387 6.85921 7.15508 7.49178 7.55332 7.70077 7.90339 8.17640 8.33926 9.10410 9.71889 10.30082 11.23667 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016605 B = 0.003413 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.816521 B = 8200.943846 C = 9490.622520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.191 4.191 3 C -0.118 4.118 4 C -0.067 4.067 5 C 0.597 3.403 6 O -0.518 6.518 7 N -0.599 5.599 8 C 0.095 3.905 9 C -0.123 4.123 10 C 0.078 3.922 11 H 0.052 0.948 12 O -0.389 6.389 13 C 0.038 3.962 14 C 0.142 3.858 15 N -0.589 5.589 16 C -0.257 4.257 17 H 0.072 0.928 18 C 0.007 3.993 19 N -0.904 5.904 20 Si 0.906 3.094 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.137 3.863 25 H 0.038 0.962 26 C 0.124 3.876 27 O -0.153 6.153 28 C 0.001 3.999 29 C -0.077 4.077 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.159 0.841 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.027 0.973 42 H 0.255 0.745 43 H 0.076 0.924 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.342 -15.136 -3.966 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.192 4.192 3 C -0.138 4.138 4 C -0.118 4.118 5 C 0.385 3.615 6 O -0.396 6.396 7 N -0.332 5.332 8 C -0.027 4.027 9 C -0.162 4.162 10 C 0.018 3.982 11 H 0.070 0.930 12 O -0.308 6.308 13 C -0.040 4.040 14 C 0.017 3.983 15 N -0.314 5.314 16 C -0.386 4.386 17 H 0.090 0.910 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.736 3.264 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.215 1.215 24 C 0.029 3.971 25 H 0.056 0.944 26 C 0.002 3.998 27 O -0.051 6.051 28 C -0.050 4.050 29 C -0.133 4.133 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.176 0.824 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.045 0.955 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.123 0.877 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.028 -14.635 -3.839 22.041 hybrid contribution 0.520 0.984 -0.627 1.277 sum -15.508 -13.650 -4.466 21.137 Atomic orbital electron populations 1.20180 0.88802 1.02677 1.02166 1.20175 0.97333 0.91805 1.09928 1.21797 0.90510 1.00435 1.01076 1.22127 0.96252 0.80050 1.13404 1.16713 0.80990 0.86247 0.77585 1.90893 1.85287 1.12631 1.50774 1.48189 1.06609 1.07673 1.70688 1.22180 1.02377 0.79883 0.98211 1.21764 0.95351 1.00676 0.98369 1.22407 0.90680 0.95593 0.89528 0.92957 1.87740 1.26839 1.70450 1.45805 1.23369 0.83414 0.96965 1.00232 1.21506 0.96757 0.88774 0.91307 1.44019 1.10114 1.40057 1.37160 1.19197 1.26218 1.00120 0.93078 0.91011 1.25154 1.01172 0.97045 0.95838 1.69964 1.36509 1.33354 1.14980 0.86154 0.78228 0.81195 0.80837 1.20103 1.21466 1.21540 1.21305 0.89035 0.91179 0.95622 0.94427 1.21873 0.82804 0.96537 0.98538 1.84162 1.27490 1.21983 1.71447 1.22739 0.81598 0.97102 1.03590 1.20380 1.01955 0.87249 1.03716 0.91378 0.91604 0.91319 0.82369 0.87121 0.91047 0.90124 0.90921 0.94152 0.90088 0.88109 0.95484 0.93488 0.90548 0.87727 0.89779 0.90138 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 9.98 36.01 0.36 -0.22 16 2 C -0.19 -2.00 6.14 -104.93 -0.64 -2.65 16 3 C -0.12 -1.54 10.58 -39.39 -0.42 -1.95 16 4 C -0.07 -0.98 6.84 -36.79 -0.25 -1.23 16 5 C 0.60 10.60 7.66 -12.86 -0.10 10.50 16 6 O -0.52 -10.87 16.28 5.20 0.08 -10.78 16 7 N -0.60 -10.24 2.99 -174.53 -0.52 -10.76 16 8 C 0.10 1.31 6.24 -3.90 -0.02 1.28 16 9 C -0.12 -1.80 5.81 -26.89 -0.16 -1.96 16 10 C 0.08 1.44 2.47 -26.63 -0.07 1.38 16 11 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 12 O -0.39 -7.79 10.49 -35.23 -0.37 -8.16 16 13 C 0.04 0.76 6.96 37.26 0.26 1.01 16 14 C 0.14 3.42 5.39 -3.47 -0.02 3.40 16 15 N -0.59 -14.76 3.04 -164.35 -0.50 -15.26 16 16 C -0.26 -6.90 8.86 -15.06 -0.13 -7.03 16 17 H 0.07 1.88 6.29 -52.49 -0.33 1.55 16 18 C 0.01 0.19 5.13 -17.43 -0.09 0.10 16 19 N -0.90 -25.92 10.89 55.49 0.60 -25.32 16 20 Si 0.91 21.68 29.56 -169.99 -5.03 16.66 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.14 2.96 3.03 -67.53 -0.20 2.75 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 26 C 0.12 2.48 4.50 -3.71 -0.02 2.47 16 27 O -0.15 -1.89 7.07 5.00 0.04 -1.86 16 28 C 0.00 0.01 7.31 -35.42 -0.26 -0.25 16 29 C -0.08 -0.43 10.03 36.00 0.36 -0.07 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.35 7.77 -51.93 -0.40 -0.05 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.16 1.98 8.06 -52.49 -0.42 1.55 16 34 H 0.11 1.37 3.77 -55.40 -0.21 1.16 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.10 2.64 6.13 -51.93 -0.32 2.32 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 43 H 0.08 1.52 7.36 -51.93 -0.38 1.14 16 44 H 0.10 2.39 6.82 -51.93 -0.35 2.03 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 0.36 7.75 -51.93 -0.40 -0.04 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -32.21 368.52 -8.57 -40.78 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.03 Total: 1.62 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -1.40 Total: 7.52 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.42 Total: -51.34 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.25 Total: -20.79 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.21 -8.57 -40.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074216708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.448 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds