Wall clock time and date at job start Tue Mar 31 2020 17:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40364 * 126.43774 * 2 1 4 4 C 1.36556 * 106.70484 * 179.89873 * 3 2 1 5 5 C 1.46653 * 125.98532 * 180.11370 * 4 3 2 6 6 O 1.21692 * 120.00302 * 353.01132 * 5 4 3 7 7 N 1.34778 * 119.99633 * 173.01884 * 5 4 3 8 8 C 1.46837 * 120.40906 * 2.57900 * 7 5 4 9 9 C 1.52912 * 109.49941 * 232.18790 * 8 7 5 10 10 C 1.52785 * 108.89050 * 306.41840 * 9 8 7 11 11 H 1.08996 * 108.94995 * 302.95301 * 10 9 8 12 12 O 1.42596 * 111.12168 * 182.41792 * 10 9 8 13 13 C 1.43148 * 113.63183 * 176.37393 * 12 10 9 14 14 C 1.53197 * 109.73541 * 61.69473 * 13 12 10 15 15 N 1.47356 * 108.79917 * 308.78119 * 14 13 12 16 16 C 1.36936 * 121.29933 * 230.21371 * 15 14 13 17 17 H 1.07999 * 119.99536 * 150.94888 * 16 15 14 18 18 C 1.38810 * 120.00510 * 330.95511 * 16 15 14 19 19 N 1.31618 * 119.99577 * 351.20216 * 18 16 15 20 20 Si 1.86792 * 120.00046 * 171.20519 * 18 16 15 21 21 H 1.48498 * 109.47559 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47323 * 119.99991 * 20 18 16 23 23 H 1.48505 * 109.46941 * 239.99742 * 20 18 16 24 24 C 1.46869 * 117.39518 * 50.24205 * 15 14 13 25 25 H 1.09004 * 109.65916 * 68.35425 * 24 15 14 26 26 C 1.47130 * 120.40704 * 182.86502 * 7 5 4 27 27 O 1.34912 * 108.01949 * 0.36079 * 4 3 2 28 28 C 1.33932 * 109.38958 * 359.76972 * 27 4 3 29 29 C 1.50696 * 125.61673 * 179.97438 * 28 27 4 30 30 H 1.08996 * 109.46899 * 269.69029 * 1 2 3 31 31 H 1.08997 * 109.46790 * 149.69023 * 1 2 3 32 32 H 1.09000 * 109.47123 * 29.69240 * 1 2 3 33 33 H 1.07996 * 126.65127 * 0.02886 * 3 2 1 34 34 H 1.08997 * 109.50828 * 352.18250 * 8 7 5 35 35 H 1.08997 * 109.50659 * 112.31548 * 8 7 5 36 36 H 1.08997 * 109.65588 * 186.52675 * 9 8 7 37 37 H 1.08999 * 109.42427 * 66.16942 * 9 8 7 38 38 H 1.08993 * 109.42858 * 301.61047 * 13 12 10 39 39 H 1.09004 * 109.38273 * 181.74684 * 13 12 10 40 40 H 1.09001 * 109.58036 * 188.98850 * 14 13 12 41 41 H 1.08996 * 109.58522 * 68.57498 * 14 13 12 42 42 H 0.97003 * 119.99956 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.72619 * 246.43722 * 26 7 5 44 44 H 1.09001 * 109.72650 * 7.10725 * 26 7 5 45 45 H 1.09000 * 109.47171 * 270.00287 * 29 28 27 46 46 H 1.09005 * 109.47285 * 29.99575 * 29 28 27 47 47 H 1.09001 * 109.47245 * 150.00079 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6261 0.6682 0.0023 5 6 4.8379 1.4942 0.0055 6 8 4.7518 2.7014 -0.1219 7 7 6.0469 0.9163 0.1495 8 6 6.1658 -0.5440 0.2471 9 6 6.9818 -0.9078 1.4881 10 6 8.3106 -0.1551 1.4446 11 1 8.8285 -0.4044 0.5185 12 8 9.1348 -0.5030 2.5550 13 6 10.4281 0.1099 2.5240 14 6 10.2796 1.6339 2.5735 15 7 9.3237 2.0519 1.5329 16 6 9.6269 3.0532 0.6493 17 1 9.1927 3.0504 -0.3396 18 6 10.4922 4.0717 1.0245 19 7 10.8848 4.1736 2.2766 20 14 11.0992 5.2974 -0.2476 21 1 10.5156 4.9662 -1.5723 22 1 10.6848 6.6674 0.1479 23 1 12.5806 5.2328 -0.3297 24 6 8.0329 1.3532 1.4809 25 1 7.4430 1.6066 2.3618 26 6 7.2633 1.7413 0.2170 27 8 3.5858 -0.6803 -0.0044 28 6 2.3097 -1.0870 -0.0058 29 6 1.8456 -2.5207 -0.0133 30 1 -0.3633 -0.0056 1.0276 31 1 -0.3633 -0.8872 -0.5186 32 1 -0.3633 0.8927 -0.5090 33 1 2.0266 2.1625 0.0004 34 1 5.1724 -0.9858 0.3239 35 1 6.6682 -0.9284 -0.6406 36 1 7.1703 -1.9813 1.5011 37 1 6.4287 -0.6211 2.3824 38 1 10.9422 -0.1746 1.6060 39 1 11.0083 -0.2259 3.3835 40 1 11.2470 2.1013 2.3900 41 1 9.9071 1.9330 3.5532 42 1 11.4892 4.8856 2.5389 43 1 7.8819 1.5573 -0.6614 44 1 6.9908 2.7957 0.2615 45 1 1.7331 -2.8608 -1.0428 46 1 2.5807 -3.1433 0.4966 47 1 0.8872 -2.5950 0.5007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074216708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:41 Heat of formation + Delta-G solvation = -45.265057 kcal Electronic energy + Delta-G solvation = -30188.518369 eV Core-core repulsion = 26145.527706 eV Total energy + Delta-G solvation = -4042.990663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.87088 -41.43777 -40.04167 -37.65530 -36.59004 -35.46758 -33.62733 -33.13937 -32.84793 -31.53529 -29.64428 -29.12259 -27.73451 -26.32925 -25.58052 -23.94572 -23.29885 -22.51533 -21.77631 -21.36880 -20.48438 -18.79726 -18.32504 -17.74106 -17.64040 -17.10788 -16.87605 -16.64635 -16.29449 -16.18340 -15.62467 -15.47063 -15.17739 -14.75984 -14.72060 -14.57932 -14.44588 -14.09496 -13.93873 -13.81802 -13.71991 -13.57957 -13.25610 -13.01303 -12.94515 -12.91614 -12.71184 -12.45143 -12.40541 -12.28214 -12.03251 -11.96512 -11.77377 -11.39650 -11.28152 -10.78053 -10.74828 -10.58682 -9.93602 -9.32845 -8.75110 -7.93124 -5.46249 -0.05046 1.27287 1.37605 1.42144 1.44750 1.54389 1.85917 2.02338 2.43673 2.80285 3.22516 3.30855 3.39457 3.74294 3.76871 3.83350 3.93547 3.98890 4.11715 4.15354 4.25206 4.35065 4.44912 4.49014 4.50774 4.52667 4.57430 4.67855 4.76901 4.78056 4.82102 4.87642 4.90168 4.94930 5.01252 5.07428 5.09830 5.10987 5.18290 5.24884 5.37585 5.54453 5.58493 5.61567 5.85988 6.19939 6.23136 6.32122 6.82035 7.02764 7.68116 8.24026 9.12353 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016605 B = 0.003413 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.816521 B = 8200.943846 C = 9490.622520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.204 4.204 3 C -0.116 4.116 4 C -0.101 4.101 5 C 0.593 3.407 6 O -0.567 6.567 7 N -0.600 5.600 8 C 0.096 3.904 9 C -0.113 4.113 10 C 0.082 3.918 11 H 0.060 0.940 12 O -0.391 6.391 13 C 0.051 3.949 14 C 0.146 3.854 15 N -0.606 5.606 16 C -0.262 4.262 17 H 0.075 0.925 18 C -0.047 4.047 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.266 1.266 22 H -0.295 1.295 23 H -0.284 1.284 24 C 0.134 3.866 25 H 0.005 0.995 26 C 0.139 3.861 27 O -0.155 6.155 28 C 0.019 3.981 29 C -0.078 4.078 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.153 0.847 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.110 0.890 40 H 0.077 0.923 41 H -0.005 1.005 42 H 0.252 0.748 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.246 -18.875 -5.208 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.205 4.205 3 C -0.137 4.137 4 C -0.152 4.152 5 C 0.383 3.617 6 O -0.449 6.449 7 N -0.332 5.332 8 C -0.024 4.024 9 C -0.151 4.151 10 C 0.023 3.977 11 H 0.078 0.922 12 O -0.310 6.310 13 C -0.027 4.027 14 C 0.021 3.979 15 N -0.331 5.331 16 C -0.391 4.391 17 H 0.093 0.907 18 C -0.242 4.242 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.190 1.190 22 H -0.222 1.222 23 H -0.210 1.210 24 C 0.027 3.973 25 H 0.023 0.977 26 C 0.016 3.984 27 O -0.053 6.053 28 C -0.032 4.032 29 C -0.134 4.134 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.171 0.829 34 H 0.149 0.851 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.128 0.872 40 H 0.095 0.905 41 H 0.013 0.987 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.122 0.878 46 H 0.110 0.890 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.949 -18.435 -5.089 26.228 hybrid contribution 0.949 2.088 -0.210 2.303 sum -17.000 -16.347 -5.299 24.172 Atomic orbital electron populations 1.20281 0.86252 1.03949 1.03166 1.20559 0.99053 0.90734 1.10121 1.22048 0.90749 1.01325 0.99608 1.21422 0.95035 0.81092 1.17602 1.17118 0.81906 0.86125 0.76523 1.90848 1.86154 1.14829 1.53060 1.48224 1.05455 1.08971 1.70507 1.22453 1.03764 0.77504 0.98705 1.21772 0.92730 1.02206 0.98411 1.22460 0.92574 0.93180 0.89481 0.92223 1.87748 1.26864 1.69886 1.46523 1.23221 0.83994 0.93382 1.02099 1.21364 0.95168 0.91936 0.89481 1.44301 1.11656 1.40265 1.36907 1.19501 1.25536 1.00491 0.93588 0.90727 1.25910 1.01888 0.98880 0.97570 1.70128 1.37378 1.34002 1.16660 0.85177 0.77740 0.78413 0.78996 1.19037 1.22213 1.20986 1.21424 0.87424 0.93549 0.94914 0.97722 1.21418 0.83968 0.95206 0.97799 1.84056 1.29055 1.20511 1.71699 1.23697 0.80331 0.99083 1.00116 1.20691 1.03170 0.84051 1.05479 0.90448 0.89121 0.91335 0.82894 0.85123 0.88818 0.86394 0.91870 0.93091 0.87225 0.90482 0.98678 0.93902 0.90296 0.91501 0.87760 0.88956 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.98 71.24 0.71 -0.16 16 2 C -0.20 -3.76 6.14 -20.06 -0.12 -3.88 16 3 C -0.12 -3.01 10.58 22.39 0.24 -2.77 16 4 C -0.10 -2.93 6.84 24.08 0.16 -2.76 16 5 C 0.59 21.86 7.66 86.44 0.66 22.53 16 6 O -0.57 -25.48 16.28 -4.32 -0.07 -25.55 16 7 N -0.60 -20.81 2.99 -824.30 -2.46 -23.28 16 8 C 0.10 2.42 6.24 86.29 0.54 2.96 16 9 C -0.11 -3.03 5.81 30.49 0.18 -2.85 16 10 C 0.08 2.97 2.47 30.66 0.08 3.05 16 11 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 12 O -0.39 -15.08 10.49 -148.98 -1.56 -16.64 16 13 C 0.05 1.97 6.96 72.05 0.50 2.48 16 14 C 0.15 7.29 5.39 86.28 0.47 7.75 16 15 N -0.61 -31.57 3.04 -673.89 -2.05 -33.62 16 16 C -0.26 -14.54 8.86 84.03 0.74 -13.80 16 17 H 0.08 4.03 6.29 -2.91 -0.02 4.01 16 18 C -0.05 -2.67 5.13 84.86 0.44 -2.23 16 19 N -0.94 -55.99 10.89 21.65 0.24 -55.75 16 20 Si 0.97 45.85 29.56 68.60 2.03 47.88 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 24 C 0.13 6.02 3.03 45.05 0.14 6.16 16 25 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 26 C 0.14 5.82 4.50 86.25 0.39 6.21 16 27 O -0.16 -3.47 7.07 -5.03 -0.04 -3.51 16 28 C 0.02 0.32 7.31 24.97 0.18 0.50 16 29 C -0.08 -0.49 10.03 71.23 0.71 0.23 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.55 7.77 -2.39 -0.02 0.54 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 33 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.13 2.87 3.77 -57.30 -0.22 2.65 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.11 3.64 8.14 -2.38 -0.02 3.62 16 40 H 0.08 4.20 6.13 -2.39 -0.01 4.19 16 41 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.08 3.23 7.36 -2.39 -0.02 3.21 16 44 H 0.07 3.29 6.82 -2.39 -0.02 3.28 16 45 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 47 H 0.11 0.27 7.75 -2.39 -0.02 0.25 16 Total: -1.00 -75.38 368.52 2.86 -72.51 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.77 Total: 14.57 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 6.01 Total: 23.39 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -4.28 Total: -112.65 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -1.67 Total: -45.70 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -75.38 2.86 -72.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074216708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.248 kcal (2) G-P(sol) polarization free energy of solvation -75.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds