Wall clock time and date at job start Tue Mar 31 2020 17:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41382 * 126.57736 * 2 1 4 4 C 1.34521 * 106.83817 * 180.23449 * 3 2 1 5 5 O 1.34302 * 108.41861 * 359.77026 * 4 3 2 6 6 C 1.34303 * 109.48157 * 0.02562 * 5 4 3 7 7 C 1.50702 * 125.79578 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47091 * 270.02728 * 7 6 5 9 9 O 1.21277 * 120.00055 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99869 * 179.97438 * 8 7 6 11 11 C 1.46841 * 120.40569 * 359.97438 * 10 8 7 12 12 C 1.53374 * 109.25126 * 232.21300 * 11 10 8 13 13 C 1.52788 * 108.81310 * 306.17491 * 12 11 10 14 14 H 1.09001 * 109.34311 * 303.33549 * 13 12 11 15 15 O 1.42592 * 111.11560 * 182.55076 * 13 12 11 16 16 C 1.43153 * 113.64060 * 176.40792 * 15 13 12 17 17 C 1.53192 * 109.73828 * 61.68841 * 16 15 13 18 18 N 1.47353 * 108.79230 * 308.77972 * 17 16 15 19 19 C 1.36943 * 121.29939 * 230.22579 * 18 17 16 20 20 H 1.08001 * 119.99324 * 153.03441 * 19 18 17 21 21 C 1.38804 * 120.00158 * 333.03282 * 19 18 17 22 22 N 1.31623 * 119.99995 * 345.58824 * 21 19 18 23 23 Si 1.86799 * 120.00245 * 165.58345 * 21 19 18 24 24 H 1.48499 * 109.47417 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47033 * 300.00665 * 23 21 19 26 26 H 1.48498 * 109.46911 * 60.00200 * 23 21 19 27 27 C 1.46873 * 117.39827 * 50.49951 * 18 17 16 28 28 H 1.09006 * 109.65013 * 67.41012 * 27 18 17 29 29 C 1.47129 * 120.40763 * 179.97438 * 10 8 7 30 30 H 1.08993 * 109.47393 * 270.16195 * 1 2 3 31 31 H 1.09000 * 109.46829 * 30.16706 * 1 2 3 32 32 H 1.09002 * 109.47043 * 150.15845 * 1 2 3 33 33 H 1.07999 * 126.58479 * 359.97438 * 3 2 1 34 34 H 1.07998 * 125.79230 * 179.79336 * 4 3 2 35 35 H 1.08994 * 109.47116 * 150.02117 * 7 6 5 36 36 H 1.09002 * 109.46317 * 30.02493 * 7 6 5 37 37 H 1.09004 * 109.50343 * 112.27954 * 11 10 8 38 38 H 1.08997 * 109.54307 * 352.16800 * 11 10 8 39 39 H 1.09004 * 109.57509 * 186.38094 * 12 11 10 40 40 H 1.08997 * 109.57713 * 65.97801 * 12 11 10 41 41 H 1.09000 * 109.42023 * 301.60818 * 16 15 13 42 42 H 1.08998 * 109.38103 * 181.74438 * 16 15 13 43 43 H 1.08999 * 109.58436 * 188.98337 * 17 16 15 44 44 H 1.09001 * 109.69697 * 68.63439 * 17 16 15 45 45 H 0.97008 * 119.99718 * 180.02562 * 22 21 19 46 46 H 1.08995 * 109.72954 * 246.46347 * 29 10 8 47 47 H 1.08999 * 109.72432 * 7.08980 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6157 0.6810 -0.0053 5 8 3.5848 -0.6616 -0.0033 6 6 2.3086 -1.0802 0.0026 7 6 1.8521 -2.5164 0.0059 8 6 1.6944 -2.9967 -1.4138 9 8 1.9291 -2.2464 -2.3373 10 7 1.2926 -4.2599 -1.6572 11 6 1.0065 -5.1759 -0.5457 12 6 1.7934 -6.4769 -0.7473 13 6 1.4800 -7.0322 -2.1358 14 1 0.4037 -7.1746 -2.2332 15 8 2.1425 -8.2760 -2.3532 16 6 1.8216 -8.8857 -3.6080 17 6 2.2613 -7.9706 -4.7553 18 7 1.7221 -6.6199 -4.5184 19 6 1.0386 -5.9454 -5.4947 20 1 0.3014 -5.2041 -5.2237 21 6 1.2933 -6.2144 -6.8324 22 7 2.3681 -6.8930 -7.1742 23 14 0.1107 -5.6136 -8.1476 24 1 0.6053 -6.0283 -9.4850 25 1 -1.2321 -6.2027 -7.9124 26 1 0.0182 -4.1326 -8.0909 27 6 1.9518 -6.0227 -3.1963 28 1 3.0147 -5.8193 -3.0656 29 6 1.1351 -4.7380 -3.0397 30 1 -0.3634 0.0029 1.0276 31 1 -0.3633 0.8885 -0.5164 32 1 -0.3633 -0.8914 -0.5114 33 1 2.0367 2.1691 -0.0004 34 1 4.5060 1.2923 -0.0099 35 1 0.8960 -2.5925 0.5236 36 1 2.5923 -3.1317 0.5175 37 1 -0.0608 -5.3961 -0.5211 38 1 1.3044 -4.7123 0.3947 39 1 1.4997 -7.2026 0.0112 40 1 2.8613 -6.2739 -0.6675 41 1 0.7456 -9.0493 -3.6668 42 1 2.3388 -9.8418 -3.6883 43 1 1.8766 -8.3573 -5.6990 44 1 3.3498 -7.9277 -4.7945 45 1 2.5462 -7.0807 -8.1091 46 1 0.0832 -4.9402 -3.2415 47 1 1.5045 -3.9835 -3.7342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074334496.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:58 Heat of formation + Delta-G solvation = -31.299306 kcal Electronic energy + Delta-G solvation = -30067.746171 eV Core-core repulsion = 26025.361108 eV Total energy + Delta-G solvation = -4042.385063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.62025 -40.12891 -38.56041 -36.08893 -34.73815 -34.30701 -32.49752 -31.55279 -31.37100 -29.92033 -28.90437 -27.17954 -26.21922 -24.84471 -23.95277 -22.13045 -21.64559 -21.34889 -20.03929 -19.65742 -18.80037 -17.36187 -17.09751 -16.69827 -16.01771 -15.62996 -15.44980 -15.35247 -15.06475 -14.66181 -14.40111 -13.99278 -13.91441 -13.44849 -13.37613 -13.19770 -13.07487 -12.89301 -12.78874 -12.71455 -12.55508 -12.45524 -12.10757 -11.87548 -11.49647 -11.35967 -11.01267 -10.95766 -10.86370 -10.60680 -10.27670 -10.24723 -9.99403 -9.70739 -9.62050 -9.61465 -9.00145 -8.54351 -8.39411 -8.36178 -6.74438 -5.84203 -3.30210 1.67496 2.52475 2.73359 2.90248 3.23983 3.36680 3.41884 3.42851 4.21868 4.42053 4.48278 4.59428 4.80482 4.85068 4.86580 5.05086 5.14782 5.15350 5.26955 5.35341 5.37902 5.40123 5.49452 5.53489 5.66939 5.71366 5.72539 5.78361 5.86176 5.91711 5.97942 6.08583 6.12741 6.15343 6.23358 6.31817 6.44767 6.52273 6.62152 6.68161 6.85566 7.12541 7.13046 7.50885 7.54904 7.69775 7.88057 8.30658 8.33244 9.09357 9.72492 10.29811 11.23638 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012894 B = 0.003543 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.948688 B = 7901.311435 C = 9249.599709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.167 4.167 3 C -0.212 4.212 4 C -0.037 4.037 5 O -0.170 6.170 6 C 0.006 3.994 7 C -0.060 4.060 8 C 0.513 3.487 9 O -0.524 6.524 10 N -0.611 5.611 11 C 0.110 3.890 12 C -0.125 4.125 13 C 0.076 3.924 14 H 0.053 0.947 15 O -0.390 6.390 16 C 0.040 3.960 17 C 0.142 3.858 18 N -0.588 5.588 19 C -0.259 4.259 20 H 0.072 0.928 21 C 0.007 3.993 22 N -0.902 5.902 23 Si 0.904 3.096 24 H -0.289 1.289 25 H -0.283 1.283 26 H -0.281 1.281 27 C 0.137 3.863 28 H 0.038 0.962 29 C 0.125 3.875 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.146 0.854 34 H 0.201 0.799 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.027 0.973 45 H 0.256 0.744 46 H 0.073 0.927 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 6.991 18.647 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.168 4.168 3 C -0.231 4.231 4 C -0.105 4.105 5 O -0.066 6.066 6 C -0.044 4.044 7 C -0.100 4.100 8 C 0.299 3.701 9 O -0.399 6.399 10 N -0.346 5.346 11 C -0.013 4.013 12 C -0.164 4.164 13 C 0.016 3.984 14 H 0.071 0.929 15 O -0.309 6.309 16 C -0.038 4.038 17 C 0.016 3.984 18 N -0.313 5.313 19 C -0.388 4.388 20 H 0.089 0.911 21 C -0.192 4.192 22 N -0.546 5.546 23 Si 0.734 3.266 24 H -0.215 1.215 25 H -0.209 1.209 26 H -0.207 1.207 27 C 0.029 3.971 28 H 0.055 0.945 29 C 0.003 3.997 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.164 0.836 34 H 0.218 0.782 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.115 0.885 44 H 0.045 0.955 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.392 7.083 18.057 19.544 hybrid contribution -0.635 0.479 -1.060 1.325 sum -3.026 7.563 16.997 18.848 Atomic orbital electron populations 1.20167 0.89379 1.02844 1.01555 1.20134 0.96994 0.92000 1.07664 1.21659 0.92654 0.99658 1.09119 1.23926 0.99692 0.80595 1.06303 1.83989 1.28635 1.22786 1.71203 1.21291 0.81212 0.95003 1.06924 1.20146 1.03778 0.89626 0.96469 1.20294 0.77282 0.81824 0.90678 1.90762 1.49112 1.54245 1.45811 1.48262 1.67100 1.11084 1.08117 1.21739 1.00097 0.90061 0.89440 1.21853 1.01489 0.96032 0.97015 1.22513 0.95770 0.85795 0.94297 0.92934 1.87734 1.69999 1.35150 1.37996 1.23338 0.99068 0.96373 0.85042 1.21461 0.96756 0.83858 0.96297 1.44054 1.65017 1.13381 1.08840 1.19103 1.14194 1.20134 0.85367 0.91056 1.25070 0.96515 1.00101 0.97532 1.69998 1.24532 1.43475 1.16630 0.86338 0.80541 0.78817 0.80936 1.21513 1.20919 1.20666 1.21412 0.96856 0.91074 0.87794 0.94488 1.21770 1.00414 0.97082 0.80407 0.91631 0.91488 0.91761 0.83638 0.78219 0.86181 0.87119 0.90939 0.89586 0.90157 0.90777 0.94110 0.90080 0.88468 0.95457 0.93417 0.90833 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.99 36.01 0.36 -0.48 16 2 C -0.17 -2.11 6.16 -104.74 -0.65 -2.75 16 3 C -0.21 -2.45 10.87 -39.70 -0.43 -2.88 16 4 C -0.04 -0.43 12.09 29.42 0.36 -0.07 16 5 O -0.17 -2.41 10.65 5.71 0.06 -2.35 16 6 C 0.01 0.08 5.82 -35.62 -0.21 -0.12 16 7 C -0.06 -0.68 4.19 -29.03 -0.12 -0.80 16 8 C 0.51 8.09 7.69 -10.99 -0.08 8.00 16 9 O -0.52 -10.87 15.43 5.56 0.09 -10.78 16 10 N -0.61 -9.25 2.98 -172.66 -0.51 -9.76 16 11 C 0.11 1.19 6.32 -3.66 -0.02 1.17 16 12 C -0.13 -1.62 5.82 -26.65 -0.16 -1.77 16 13 C 0.08 1.34 2.48 -26.41 -0.07 1.28 16 14 H 0.05 0.94 8.13 -51.93 -0.42 0.52 16 15 O -0.39 -7.56 10.49 -35.23 -0.37 -7.93 16 16 C 0.04 0.77 6.96 37.26 0.26 1.03 16 17 C 0.14 3.38 5.42 -3.48 -0.02 3.36 16 18 N -0.59 -14.60 3.04 -164.07 -0.50 -15.10 16 19 C -0.26 -6.93 8.89 -15.06 -0.13 -7.06 16 20 H 0.07 1.85 6.26 -52.49 -0.33 1.53 16 21 C 0.01 0.19 5.01 -17.43 -0.09 0.10 16 22 N -0.90 -25.93 11.06 55.49 0.61 -25.32 16 23 Si 0.90 21.62 29.58 -169.99 -5.03 16.59 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.14 2.88 3.06 -67.28 -0.21 2.68 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 29 C 0.12 2.41 4.47 -3.68 -0.02 2.40 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.68 7.78 -51.93 -0.40 0.28 16 33 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.20 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.12 0.94 7.59 -51.93 -0.39 0.54 16 36 H 0.11 1.00 7.66 -51.93 -0.40 0.60 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.63 5.91 -51.93 -0.31 0.32 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 43 H 0.10 2.52 6.16 -51.93 -0.32 2.20 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.07 1.41 7.38 -51.93 -0.38 1.03 16 47 H 0.10 2.32 6.79 -51.93 -0.35 1.97 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -34.34 371.15 -8.37 -42.71 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.09 Total: 2.26 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -1.22 Total: 4.07 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.40 Total: -50.18 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.22 Total: -21.06 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.34 -8.37 -42.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074334496.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.415 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds