Wall clock time and date at job start Tue Mar 31 2020 19:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35963 * 120.56830 * 2 1 4 4 C 1.40845 * 119.33687 * 180.25267 * 3 2 1 5 5 O 1.21853 * 119.75471 * 179.71198 * 4 3 2 6 6 O 1.34378 * 120.48789 * 359.74060 * 4 3 2 7 7 C 1.33722 * 121.20861 * 359.97438 * 6 4 3 8 8 C 1.50695 * 119.69201 * 180.02562 * 7 6 4 9 9 C 1.37599 * 120.61956 * 0.02562 * 7 6 4 10 10 C 1.47514 * 120.25819 * 179.97438 * 9 7 6 11 11 O 1.21603 * 119.99890 * 90.00031 * 10 9 7 12 12 N 1.34777 * 120.00093 * 269.72593 * 10 9 7 13 13 C 1.46504 * 119.99854 * 180.27858 * 12 10 9 14 14 C 1.52996 * 109.46681 * 179.97438 * 13 12 10 15 15 H 1.08995 * 110.64723 * 54.29716 * 14 13 12 16 16 C 1.54330 * 110.72159 * 291.15087 * 14 13 12 17 17 N 1.47023 * 107.27422 * 219.45051 * 16 14 13 18 18 C 1.36930 * 125.64830 * 178.97865 * 17 16 14 19 19 H 1.08004 * 119.99842 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00027 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00210 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00190 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47033 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47357 * 120.00046 * 22 20 18 25 25 H 1.48500 * 109.47479 * 240.00847 * 22 20 18 26 26 C 1.47429 * 108.70145 * 358.93920 * 17 16 14 27 27 C 1.55125 * 104.94287 * 24.00457 * 26 17 16 28 28 H 1.08996 * 110.93273 * 81.21381 * 27 26 17 29 29 C 1.52999 * 111.16061 * 205.12900 * 27 26 17 30 30 H 1.09001 * 109.47222 * 270.25489 * 1 2 3 31 31 H 1.09002 * 109.47699 * 30.25911 * 1 2 3 32 32 H 1.09001 * 109.47350 * 150.26038 * 1 2 3 33 33 H 1.07996 * 120.33130 * 359.96544 * 3 2 1 34 34 H 1.09005 * 109.47324 * 269.98278 * 8 7 6 35 35 H 1.08998 * 109.46970 * 29.97748 * 8 7 6 36 36 H 1.08994 * 109.47235 * 149.98204 * 8 7 6 37 37 H 0.97000 * 119.99736 * 0.27132 * 12 10 9 38 38 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 39 39 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 40 40 H 1.08999 * 109.88053 * 338.86713 * 16 14 13 41 41 H 1.09004 * 109.87730 * 100.02757 * 16 14 13 42 42 H 0.96995 * 120.00565 * 179.97438 * 21 20 18 43 43 H 1.08997 * 110.36128 * 142.97181 * 26 17 16 44 44 H 1.08999 * 110.36447 * 265.29502 * 26 17 16 45 45 H 1.09004 * 109.46910 * 172.16998 * 29 27 26 46 46 H 1.09004 * 109.47049 * 292.17177 * 29 27 26 47 47 H 1.09000 * 109.46904 * 52.17257 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6065 1.1404 -0.0054 5 8 4.2338 2.1850 -0.0108 6 8 4.2632 -0.0319 -0.0053 7 6 3.6041 -1.1954 0.0004 8 6 4.3751 -2.4902 0.0010 9 6 2.2283 -1.2215 0.0059 10 6 1.5093 -2.5095 0.0116 11 8 1.2170 -3.0379 1.0671 12 7 1.1714 -3.0978 -1.1529 13 6 0.4519 -4.3740 -1.1471 14 6 0.1923 -4.8195 -2.5876 15 1 1.1229 -4.8495 -3.1542 16 6 -0.8330 -3.8898 -3.2704 17 7 -1.7111 -4.7363 -4.0913 18 6 -2.7673 -4.2969 -4.8438 19 1 -3.0141 -3.2456 -4.8661 20 6 -3.5209 -5.2025 -5.5779 21 7 -3.2204 -6.4836 -5.5503 22 14 -4.9623 -4.6032 -6.6038 23 1 -5.0900 -3.1301 -6.4652 24 1 -4.7320 -4.9475 -8.0298 25 1 -6.2105 -5.2551 -6.1324 26 6 -1.2654 -6.1364 -3.9709 27 6 -0.5126 -6.2014 -2.6161 28 1 -1.2123 -6.3003 -1.7862 29 6 0.5103 -7.3392 -2.6067 30 1 -0.3634 0.0046 1.0277 31 1 -0.3634 0.8876 -0.5178 32 1 -0.3634 -0.8923 -0.5098 33 1 1.6732 2.1143 -0.0006 34 1 4.5568 -2.8053 -1.0266 35 1 5.3278 -2.3455 0.5103 36 1 3.7985 -3.2562 0.5194 37 1 1.4045 -2.6762 -1.9948 38 1 1.0518 -5.1270 -0.6360 39 1 -0.4987 -4.2528 -0.6277 40 1 -1.4210 -3.3684 -2.5151 41 1 -0.3155 -3.1687 -3.9032 42 1 -3.7471 -7.1165 -6.0629 43 1 -2.1237 -6.8082 -3.9618 44 1 -0.5914 -6.3916 -4.7887 45 1 1.1170 -7.2748 -1.7034 46 1 -0.0107 -8.2964 -2.6271 47 1 1.1534 -7.2567 -3.4829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092805043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:29 Heat of formation + Delta-G solvation = -84.354921 kcal Electronic energy + Delta-G solvation = -29092.890426 eV Core-core repulsion = 25048.204699 eV Total energy + Delta-G solvation = -4044.685727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.27965 -41.00294 -39.59163 -39.05017 -37.06123 -36.07053 -34.66463 -33.86867 -32.52596 -30.88998 -29.91352 -29.01728 -27.79045 -26.63021 -25.50751 -24.38063 -23.10666 -22.45604 -21.45227 -20.95245 -19.60431 -19.32853 -18.75945 -18.17391 -17.84039 -17.24041 -17.00148 -16.42171 -16.18679 -15.73898 -15.54056 -15.20357 -14.96630 -14.81381 -14.66150 -14.52736 -14.40835 -14.36004 -14.01364 -13.77769 -13.49004 -13.45883 -13.40692 -13.36431 -12.97993 -12.80318 -12.75211 -12.65682 -12.43149 -11.93373 -11.85723 -11.68449 -11.54501 -11.52268 -11.37183 -11.29839 -10.97587 -10.72950 -10.15336 -9.54403 -8.84716 -7.75737 -5.19368 -0.71780 0.14778 1.02753 1.37512 1.47377 1.47721 1.57596 1.92347 2.12288 2.50251 2.99042 3.15891 3.33920 3.49804 3.62318 3.70781 3.85676 3.93928 3.97623 4.01534 4.18672 4.34965 4.43222 4.47298 4.54491 4.55889 4.58924 4.67462 4.69055 4.79989 4.84259 4.90502 4.96363 5.01743 5.02690 5.11147 5.14913 5.19724 5.34499 5.43819 5.45097 5.54254 5.76814 5.88178 5.88400 6.25431 6.34892 6.40853 7.05062 7.13845 7.82276 8.44892 9.25666 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.002756 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.775559 B =10157.360778 C =11322.775550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.069 3.931 3 C -0.284 4.284 4 C 0.495 3.505 5 O -0.517 6.517 6 O -0.259 6.259 7 C 0.201 3.799 8 C -0.123 4.123 9 C -0.274 4.274 10 C 0.590 3.410 11 O -0.560 6.560 12 N -0.703 5.703 13 C 0.143 3.857 14 C -0.089 4.089 15 H 0.098 0.902 16 C 0.136 3.864 17 N -0.629 5.629 18 C -0.235 4.235 19 H 0.080 0.920 20 C -0.067 4.067 21 N -0.947 5.947 22 Si 0.975 3.025 23 H -0.267 1.267 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.161 3.839 27 C -0.100 4.100 28 H 0.067 0.933 29 C -0.128 4.128 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.178 0.822 34 H 0.131 0.869 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.414 0.586 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.024 0.976 41 H 0.027 0.973 42 H 0.246 0.754 43 H 0.066 0.934 44 H -0.012 1.012 45 H 0.078 0.922 46 H 0.050 0.950 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.111 6.695 11.697 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.068 3.932 3 C -0.303 4.303 4 C 0.350 3.650 5 O -0.410 6.410 6 O -0.168 6.168 7 C 0.151 3.849 8 C -0.178 4.178 9 C -0.279 4.279 10 C 0.375 3.625 11 O -0.439 6.439 12 N -0.353 5.353 13 C 0.020 3.980 14 C -0.109 4.109 15 H 0.116 0.884 16 C 0.011 3.989 17 N -0.354 5.354 18 C -0.364 4.364 19 H 0.098 0.902 20 C -0.260 4.260 21 N -0.598 5.598 22 Si 0.804 3.196 23 H -0.191 1.191 24 H -0.221 1.221 25 H -0.220 1.220 26 C 0.036 3.964 27 C -0.120 4.120 28 H 0.085 0.915 29 C -0.185 4.185 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.090 0.910 33 H 0.196 0.804 34 H 0.149 0.851 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.250 0.750 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.006 0.994 45 H 0.097 0.903 46 H 0.069 0.931 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.240 6.766 12.296 19.993 hybrid contribution -1.157 0.538 -1.254 1.789 sum 13.083 7.303 11.041 18.612 Atomic orbital electron populations 1.21145 0.87907 1.05165 1.04735 1.20433 0.98236 0.90198 0.84364 1.22245 0.91368 1.01186 1.15490 1.19579 0.89059 0.80519 0.75825 1.90989 1.71682 1.27212 1.51144 1.83394 1.44990 1.14932 1.73454 1.23332 0.90398 0.85801 0.85333 1.21379 1.01847 0.87333 1.07260 1.19830 0.93176 0.95139 1.19738 1.17459 0.78226 0.82998 0.83794 1.90843 1.55616 1.65379 1.32091 1.46018 1.57227 1.23546 1.08557 1.21316 0.96533 0.84537 0.95646 1.22344 0.98549 0.95135 0.94830 0.88415 1.21545 0.91231 0.93333 0.92800 1.44802 1.32729 1.04203 1.53715 1.19463 1.04359 0.93137 1.19455 0.90247 1.25573 1.02393 0.95810 1.02186 1.70058 1.42174 1.01610 1.45910 0.85055 0.78910 0.77842 0.77812 1.19141 1.22092 1.22027 1.21802 0.96366 0.86573 0.91698 1.22456 0.97218 0.94310 0.98008 0.91482 1.21608 0.97817 0.96809 1.02288 0.88355 0.87672 0.90953 0.80424 0.85128 0.86765 0.87970 0.74974 0.89476 0.92413 0.95838 0.95538 0.94463 0.91603 0.99357 0.90312 0.93064 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.67 71.23 0.69 -1.25 16 2 C 0.07 1.18 5.93 -19.50 -0.12 1.06 16 3 C -0.28 -5.17 9.65 22.38 0.22 -4.95 16 4 C 0.49 11.57 7.93 68.46 0.54 12.12 16 5 O -0.52 -15.77 17.93 18.73 0.34 -15.43 16 6 O -0.26 -5.16 9.81 25.82 0.25 -4.91 16 7 C 0.20 3.09 7.03 25.53 0.18 3.27 16 8 C -0.12 -1.04 9.79 71.23 0.70 -0.34 16 9 C -0.27 -4.81 5.63 -20.09 -0.11 -4.92 16 10 C 0.59 11.78 4.23 86.69 0.37 12.15 16 11 O -0.56 -15.27 17.08 -4.04 -0.07 -15.34 16 12 N -0.70 -12.42 5.43 -466.28 -2.53 -14.95 16 13 C 0.14 3.07 5.00 86.38 0.43 3.50 16 14 C -0.09 -2.37 2.45 -9.60 -0.02 -2.39 16 15 H 0.10 2.27 8.04 -2.39 -0.02 2.25 16 16 C 0.14 4.83 6.64 86.73 0.58 5.41 16 17 N -0.63 -30.39 3.40 -691.53 -2.35 -32.74 16 18 C -0.23 -12.69 10.27 84.03 0.86 -11.82 16 19 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 20 C -0.07 -3.71 5.49 84.86 0.47 -3.24 16 21 N -0.95 -55.13 10.09 21.65 0.22 -54.92 16 22 Si 0.97 44.66 29.55 68.60 2.03 46.68 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 26 C 0.16 7.38 5.37 86.93 0.47 7.85 16 27 C -0.10 -3.20 3.10 -9.33 -0.03 -3.23 16 28 H 0.07 2.23 8.05 -2.39 -0.02 2.21 16 29 C -0.13 -3.20 9.31 71.98 0.67 -2.53 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.13 8.09 -2.39 -0.02 1.11 16 32 H 0.07 1.21 7.18 -2.39 -0.02 1.20 16 33 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.10 1.02 6.99 -2.39 -0.02 1.01 16 37 H 0.41 5.97 8.39 -92.71 -0.78 5.19 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 1.47 8.00 -2.39 -0.02 1.45 16 40 H 0.02 0.84 7.73 -2.39 -0.02 0.83 16 41 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 43 H 0.07 3.57 5.87 -2.39 -0.01 3.56 16 44 H -0.01 -0.57 7.99 -2.39 -0.02 -0.59 16 45 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 47 H 0.05 1.35 8.08 -2.39 -0.02 1.33 16 Total: -1.00 -74.05 387.68 3.98 -70.06 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.21 Total: 10.86 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 5.88 Total: 10.67 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -4.66 Total: -102.61 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: 0.52 Total: -35.67 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -74.05 3.98 -70.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092805043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.290 kcal (2) G-P(sol) polarization free energy of solvation -74.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds