Wall clock time and date at job start Tue Mar 31 2020 19:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35958 * 120.56517 * 2 1 4 4 C 1.40848 * 119.33770 * 180.02562 * 3 2 1 5 5 O 1.21857 * 119.75900 * 179.97438 * 4 3 2 6 6 O 1.34380 * 120.48365 * 0.02562 * 4 3 2 7 7 C 1.33719 * 121.20956 * 359.68870 * 6 4 3 8 8 C 1.50700 * 119.69565 * 180.28582 * 7 6 4 9 9 C 1.37594 * 120.61697 * 0.57116 * 7 6 4 10 10 C 1.47527 * 120.25667 * 179.73448 * 9 7 6 11 11 O 1.21590 * 120.00480 * 269.72281 * 10 9 7 12 12 N 1.34785 * 119.99681 * 89.72566 * 10 9 7 13 13 C 1.48146 * 127.83657 * 0.02562 * 12 10 9 14 14 C 1.54389 * 104.71947 * 219.64948 * 13 12 10 15 15 C 1.54289 * 104.96102 * 336.07694 * 14 13 12 16 16 C 1.53002 * 110.34304 * 118.86760 * 15 14 13 17 17 C 1.52997 * 110.34219 * 241.02302 * 15 14 13 18 18 N 1.46495 * 109.47487 * 298.54579 * 17 15 14 19 19 C 1.36935 * 120.00535 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99820 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99965 * 179.97438 * 19 18 17 22 22 N 1.31613 * 120.00397 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99462 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47673 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46913 * 120.00066 * 23 21 19 26 26 H 1.48497 * 109.47301 * 240.00025 * 23 21 19 27 27 C 1.48427 * 127.97962 * 180.11937 * 12 10 9 28 28 H 1.08993 * 109.47228 * 269.97654 * 1 2 3 29 29 H 1.09000 * 109.47100 * 29.98155 * 1 2 3 30 30 H 1.08999 * 109.46885 * 149.97586 * 1 2 3 31 31 H 1.08004 * 120.33547 * 0.04217 * 3 2 1 32 32 H 1.08994 * 109.47312 * 270.28957 * 8 7 6 33 33 H 1.09010 * 109.46627 * 30.28420 * 8 7 6 34 34 H 1.09001 * 109.47542 * 150.27972 * 8 7 6 35 35 H 1.09002 * 110.40776 * 100.80694 * 13 12 10 36 36 H 1.09002 * 110.40863 * 338.49103 * 13 12 10 37 37 H 1.08997 * 110.34484 * 94.94604 * 14 13 12 38 38 H 1.08998 * 110.34546 * 217.10012 * 14 13 12 39 39 H 1.08999 * 109.46612 * 61.45658 * 16 15 14 40 40 H 1.08995 * 109.46848 * 181.45419 * 16 15 14 41 41 H 1.08999 * 109.47340 * 301.45639 * 16 15 14 42 42 H 1.09000 * 109.47132 * 58.54685 * 17 15 14 43 43 H 1.08999 * 109.46751 * 178.54093 * 17 15 14 44 44 H 0.97002 * 119.99461 * 0.02562 * 18 17 15 45 45 H 0.96997 * 120.00177 * 179.97438 * 22 21 19 46 46 H 1.09004 * 110.39413 * 21.57126 * 27 12 10 47 47 H 1.09006 * 110.49084 * 259.21157 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6065 1.1405 -0.0005 5 8 4.2339 2.1852 -0.0010 6 8 4.2633 -0.0319 -0.0016 7 6 3.6041 -1.1953 0.0041 8 6 4.3751 -2.4902 0.0092 9 6 2.2284 -1.2214 -0.0006 10 6 1.5093 -2.5095 -0.0002 11 8 1.2122 -3.0403 -1.0530 12 7 1.1817 -3.0980 1.1673 13 6 1.4547 -2.6098 2.5391 14 6 1.8407 -3.8745 3.3360 15 6 1.1898 -5.0435 2.5677 16 6 2.2618 -6.0148 2.0694 17 6 0.1857 -5.7739 3.4617 18 7 0.8820 -6.3324 4.6233 19 6 0.1826 -7.0336 5.5690 20 1 -0.8824 -7.1753 5.4582 21 6 0.8425 -7.5632 6.6694 22 7 2.1403 -7.3909 6.8041 23 14 -0.1118 -8.5191 7.9597 24 1 -1.5460 -8.5699 7.5781 25 1 0.4251 -9.9008 8.0497 26 1 0.0269 -7.8473 9.2767 27 6 0.4675 -4.3826 1.3738 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6731 2.1144 0.0007 32 1 4.5647 -2.8043 -1.0171 33 1 5.3240 -2.3459 0.5262 34 1 3.7946 -3.2567 0.5226 35 1 0.5620 -2.1506 2.9638 36 1 2.2804 -1.8983 2.5321 37 1 2.9240 -3.9923 3.3584 38 1 1.4453 -3.8187 4.3502 39 1 2.7980 -6.4324 2.9215 40 1 1.7892 -6.8203 1.5073 41 1 2.9618 -5.4837 1.4244 42 1 -0.5781 -5.0730 3.7983 43 1 -0.2839 -6.5797 2.8975 44 1 1.8384 -6.2048 4.7230 45 1 2.6014 -7.7606 7.5733 46 1 0.5491 -5.0097 0.4859 47 1 -0.5799 -4.2023 1.6158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278519412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:28 Heat of formation + Delta-G solvation = -84.035674 kcal Electronic energy + Delta-G solvation = -29622.896659 eV Core-core repulsion = 25578.224775 eV Total energy + Delta-G solvation = -4044.671883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.31066 -41.33941 -39.52325 -39.00418 -37.04322 -36.43631 -34.40943 -33.80757 -32.00965 -30.63141 -29.92918 -29.30612 -27.82716 -27.11526 -25.48791 -24.36840 -24.06320 -23.12638 -21.42554 -20.14595 -19.50652 -19.21729 -18.69189 -18.18958 -17.81005 -17.30169 -16.92727 -16.53332 -15.94134 -15.50450 -15.44576 -15.21069 -15.06219 -14.90456 -14.78056 -14.56308 -14.51955 -14.37239 -14.01927 -13.86495 -13.69287 -13.50594 -13.46418 -13.37704 -13.00076 -12.83583 -12.82367 -12.77714 -12.38881 -12.05161 -12.04182 -11.75165 -11.60030 -11.56043 -11.52552 -11.31420 -11.17772 -10.89464 -9.85447 -9.55678 -8.91766 -7.90908 -5.17157 -0.73948 0.12783 0.99109 1.32650 1.49871 1.51233 1.59927 1.73831 2.02519 2.59475 2.95057 3.07287 3.31092 3.43821 3.52199 3.65034 3.69770 3.85893 3.95317 4.13875 4.20776 4.30472 4.31341 4.37422 4.40316 4.41807 4.53185 4.59317 4.64204 4.68071 4.76354 4.78074 4.82046 4.88989 4.99288 5.01931 5.05654 5.08666 5.11668 5.20800 5.36680 5.43890 5.48900 5.56370 5.86920 6.24575 6.32200 6.38197 6.89339 7.40188 8.17164 8.40366 9.32556 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020155 B = 0.002615 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.922077 B =10704.538910 C =10919.734325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.069 3.931 3 C -0.279 4.279 4 C 0.493 3.507 5 O -0.516 6.516 6 O -0.260 6.260 7 C 0.196 3.804 8 C -0.123 4.123 9 C -0.265 4.265 10 C 0.610 3.390 11 O -0.562 6.562 12 N -0.604 5.604 13 C 0.107 3.893 14 C -0.120 4.120 15 C -0.071 4.071 16 C -0.125 4.125 17 C 0.166 3.834 18 N -0.737 5.737 19 C -0.237 4.237 20 H 0.074 0.926 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.965 3.035 24 H -0.268 1.268 25 H -0.298 1.298 26 H -0.295 1.295 27 C 0.123 3.877 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.183 0.817 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.028 0.972 43 H 0.018 0.982 44 H 0.378 0.622 45 H 0.249 0.751 46 H 0.082 0.918 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 14.239 -14.744 20.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.067 3.933 3 C -0.298 4.298 4 C 0.348 3.652 5 O -0.409 6.409 6 O -0.169 6.169 7 C 0.146 3.854 8 C -0.179 4.179 9 C -0.270 4.270 10 C 0.398 3.602 11 O -0.441 6.441 12 N -0.336 5.336 13 C -0.015 4.015 14 C -0.159 4.159 15 C -0.072 4.072 16 C -0.182 4.182 17 C 0.039 3.961 18 N -0.381 5.381 19 C -0.369 4.369 20 H 0.092 0.908 21 C -0.265 4.265 22 N -0.618 5.618 23 Si 0.795 3.205 24 H -0.192 1.192 25 H -0.225 1.225 26 H -0.223 1.223 27 C 0.000 4.000 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.200 0.800 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.036 0.964 44 H 0.211 0.789 45 H 0.058 0.942 46 H 0.100 0.900 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.976 14.449 -15.339 21.095 hybrid contribution -0.011 -0.660 1.042 1.234 sum -0.987 13.789 -14.296 19.887 Atomic orbital electron populations 1.21145 0.87325 1.05002 1.05169 1.20460 0.98616 0.89750 0.84471 1.22268 0.91121 1.01268 1.15142 1.19673 0.89261 0.80396 0.75846 1.90992 1.71730 1.27125 1.51082 1.83391 1.45071 1.14910 1.73508 1.23165 0.90496 0.85648 0.86049 1.21323 1.02109 0.87779 1.06672 1.19748 0.92930 0.95122 1.19151 1.17034 0.78127 0.82984 0.82065 1.90836 1.56307 1.65447 1.31535 1.49002 1.56057 1.22850 1.05688 1.22552 1.02517 0.96655 0.79808 1.22551 1.01279 0.92875 0.99147 1.21519 0.95957 0.95343 0.94421 1.21721 0.97825 0.98338 1.00346 1.20778 0.93354 0.94710 0.87221 1.42508 1.08080 1.64339 1.23156 1.19620 0.92644 1.24621 0.99999 0.90833 1.25424 0.96585 1.03381 1.01113 1.69787 1.08504 1.52112 1.31369 0.85190 0.78335 0.77738 0.79203 1.19223 1.22507 1.22283 1.22429 0.96068 0.83866 0.97617 0.87330 0.87614 0.91346 0.79985 0.86354 0.86506 0.88209 0.88952 0.89310 0.90707 0.90764 0.93808 0.92930 0.91735 0.95425 0.96366 0.78904 0.94176 0.89974 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.67 71.24 0.69 -0.76 16 2 C 0.07 1.07 5.93 -19.50 -0.12 0.96 16 3 C -0.28 -4.72 9.64 22.38 0.22 -4.51 16 4 C 0.49 11.48 7.93 68.46 0.54 12.03 16 5 O -0.52 -15.67 17.93 18.71 0.34 -15.33 16 6 O -0.26 -5.49 9.81 25.83 0.25 -5.24 16 7 C 0.20 3.40 7.03 25.53 0.18 3.58 16 8 C -0.12 -1.55 9.80 71.24 0.70 -0.86 16 9 C -0.27 -4.83 4.53 -20.09 -0.09 -4.92 16 10 C 0.61 12.89 4.33 86.69 0.38 13.27 16 11 O -0.56 -15.82 17.39 -4.00 -0.07 -15.89 16 12 N -0.60 -11.57 3.30 -810.92 -2.67 -14.25 16 13 C 0.11 1.82 6.90 86.53 0.60 2.41 16 14 C -0.12 -2.80 5.78 31.50 0.18 -2.62 16 15 C -0.07 -1.82 0.74 -51.27 -0.04 -1.86 16 16 C -0.12 -3.35 8.06 71.98 0.58 -2.77 16 17 C 0.17 5.67 4.91 86.38 0.42 6.09 16 18 N -0.74 -33.53 4.93 -343.47 -1.69 -35.22 16 19 C -0.24 -12.34 9.99 84.03 0.84 -11.50 16 20 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 21 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 22 N -0.97 -56.26 13.06 21.65 0.28 -55.98 16 23 Si 0.97 44.38 29.55 68.60 2.03 46.41 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 27 C 0.12 2.62 6.16 86.48 0.53 3.16 16 28 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 0.76 8.09 -2.39 -0.02 0.74 16 30 H 0.07 0.99 7.18 -2.39 -0.02 0.97 16 31 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.10 1.37 6.99 -2.39 -0.02 1.35 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.28 7.44 -2.39 -0.02 1.26 16 37 H 0.07 1.72 7.71 -2.39 -0.02 1.70 16 38 H 0.07 2.11 7.49 -2.39 -0.02 2.09 16 39 H 0.04 1.42 6.99 -2.39 -0.02 1.40 16 40 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.03 0.93 8.13 -2.39 -0.02 0.91 16 43 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.38 18.22 6.27 -92.71 -0.58 17.63 16 45 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 46 H 0.08 1.87 7.61 -2.38 -0.02 1.85 16 47 H 0.09 1.74 7.85 -2.38 -0.02 1.73 16 Total: -1.00 -70.20 387.11 4.95 -65.25 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.41 Total: 22.06 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 6.08 Total: 8.20 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -4.08 Total: -105.45 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: 0.52 Total: -36.46 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -70.20 4.95 -65.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278519412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.786 kcal (2) G-P(sol) polarization free energy of solvation -70.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds