Wall clock time and date at job start Tue Mar 31 2020 19:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.77849 * 2 1 4 4 C 1.54320 * 110.72137 * 123.23828 * 2 1 3 5 5 N 1.47022 * 107.26616 * 96.16986 * 4 2 1 6 6 C 1.34786 * 125.64556 * 178.97477 * 5 4 2 7 7 O 1.21281 * 119.99634 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.99866 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.46915 * 174.42094 * 8 6 5 10 10 C 1.53002 * 115.55561 * 292.83954 * 9 8 6 11 11 F 1.39898 * 109.47049 * 68.71822 * 10 9 8 12 12 F 1.39899 * 109.47378 * 188.72140 * 10 9 8 13 13 F 1.39902 * 109.46582 * 308.72119 * 10 9 8 14 14 C 1.53004 * 117.49812 * 147.16352 * 9 8 6 15 15 C 1.52999 * 117.49538 * 78.50938 * 9 8 6 16 16 C 1.47416 * 108.70667 * 358.94239 * 5 4 2 17 17 C 1.54904 * 104.83410 * 24.12867 * 16 5 4 18 18 H 1.09000 * 111.00772 * 81.10094 * 17 16 5 19 19 N 1.46507 * 111.00569 * 204.91889 * 17 16 5 20 20 C 1.36932 * 119.99596 * 273.54419 * 19 17 16 21 21 H 1.08001 * 120.00529 * 359.97438 * 20 19 17 22 22 C 1.38817 * 120.00039 * 180.02562 * 20 19 17 23 23 N 1.31616 * 119.99410 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00140 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47671 * 59.99778 * 24 22 20 26 26 H 1.48510 * 109.47091 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47174 * 299.99473 * 24 22 20 28 28 H 1.08999 * 109.47198 * 298.21540 * 1 2 3 29 29 H 1.09007 * 109.47339 * 58.21430 * 1 2 3 30 30 H 1.09000 * 109.46781 * 178.21180 * 1 2 3 31 31 H 1.08995 * 109.47294 * 181.78397 * 3 2 1 32 32 H 1.08997 * 109.47330 * 301.78666 * 3 2 1 33 33 H 1.09002 * 109.46993 * 61.78347 * 3 2 1 34 34 H 1.08999 * 109.88281 * 336.75381 * 4 2 1 35 35 H 1.08999 * 109.88127 * 215.58854 * 4 2 1 36 36 H 1.08999 * 109.47547 * 294.42329 * 8 6 5 37 37 H 1.09007 * 109.47029 * 54.42905 * 8 6 5 38 38 H 1.08998 * 117.49894 * 0.02562 * 14 9 8 39 39 H 1.09001 * 117.49761 * 145.01964 * 14 9 8 40 40 H 1.09001 * 117.50048 * 214.97944 * 15 9 8 41 41 H 1.08999 * 117.50191 * 359.97317 * 15 9 8 42 42 H 1.09005 * 110.36796 * 142.96406 * 16 5 4 43 43 H 1.09005 * 110.36866 * 265.28601 * 16 5 4 44 44 H 0.96997 * 119.99731 * 93.54175 * 19 17 16 45 45 H 0.97007 * 119.99800 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0761 -0.7911 1.2072 5 7 2.3716 -2.1531 0.7389 6 6 2.8851 -3.1478 1.4896 7 8 3.1428 -2.9540 2.6588 8 6 3.1378 -4.5010 0.8765 9 6 3.8455 -5.3978 1.8943 10 6 5.2708 -4.9810 2.2628 11 9 5.2338 -3.7881 2.9928 12 9 5.8644 -5.9835 3.0373 13 9 6.0174 -4.7902 1.0952 14 6 3.5363 -6.8957 1.8514 15 6 2.9893 -6.0332 2.9916 16 6 2.0126 -2.2508 -0.6876 17 6 2.0790 -0.7954 -1.2138 18 1 3.1061 -0.5074 -1.4382 19 7 1.2196 -0.6217 -2.3876 20 6 1.7014 -0.9071 -3.6371 21 1 2.7150 -1.2600 -3.7575 22 6 0.8873 -0.7421 -4.7494 23 7 -0.3478 -0.3116 -4.6027 24 14 1.5444 -1.1322 -6.4539 25 1 1.9486 -2.5598 -6.5139 26 1 0.4862 -0.8738 -7.4634 27 1 2.7209 -0.2721 -6.7397 28 1 -0.3633 0.4859 0.9055 29 1 -0.3634 0.5413 -0.8736 30 1 -0.3633 -1.0272 -0.0321 31 1 3.1620 1.4058 -0.0320 32 1 1.6956 1.9622 -0.8735 33 1 1.7474 1.9425 0.9056 34 1 1.3264 -0.8255 1.9977 35 1 2.9869 -0.3206 1.5775 36 1 2.1883 -4.9539 0.5914 37 1 3.7663 -4.3879 -0.0069 38 1 2.8291 -7.2422 1.0979 39 1 4.3482 -7.5841 2.0860 40 1 3.4415 -6.1546 3.9759 41 1 1.9220 -5.8120 2.9887 42 1 2.7294 -2.8786 -1.2170 43 1 1.0039 -2.6488 -0.7985 44 1 0.3093 -0.3045 -2.2794 45 1 -0.9168 -0.1966 -5.3798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332386496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:06 Heat of formation + Delta-G solvation = -148.601714 kcal Electronic energy + Delta-G solvation = -30667.312174 eV Core-core repulsion = 26077.983757 eV Total energy + Delta-G solvation = -4589.328417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.03726 -47.64612 -47.37713 -40.18468 -38.63198 -37.19318 -34.15753 -33.23988 -30.86913 -30.02171 -27.55819 -27.04604 -26.88593 -25.62394 -23.98196 -22.90072 -21.64270 -20.82852 -19.19738 -18.66651 -18.36697 -18.20342 -17.43952 -17.28028 -16.70244 -15.82310 -15.35222 -14.97509 -14.71753 -14.39063 -14.27389 -14.10387 -13.99252 -13.92910 -13.75081 -13.68197 -13.57560 -13.47733 -13.03312 -12.91215 -12.75057 -12.27816 -12.02066 -12.00565 -11.89881 -11.66929 -11.54364 -11.33701 -11.06851 -10.94510 -10.91802 -10.66873 -10.58151 -10.49780 -10.28525 -9.89006 -9.74304 -9.59216 -9.04007 -8.33717 -7.12091 -5.89362 -3.19663 2.67008 2.80664 2.90565 3.29909 3.36907 3.42683 3.42733 3.72474 3.84280 4.21469 4.25634 4.46812 4.57651 4.67147 4.78836 5.02372 5.06130 5.13106 5.20301 5.25638 5.32988 5.44685 5.46761 5.54883 5.58717 5.66328 5.71958 5.76606 5.85855 5.96894 5.99359 6.11459 6.17709 6.29405 6.31786 6.39002 6.53967 6.63003 6.69074 6.86059 7.59396 7.76950 8.28576 8.34108 9.41260 9.95074 10.30470 11.32646 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.013975 B = 0.003393 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.085344 B = 8250.951763 C = 9287.058254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.123 3.877 5 N -0.611 5.611 6 C 0.518 3.482 7 O -0.533 6.533 8 C -0.099 4.099 9 C -0.182 4.182 10 C 0.487 3.513 11 F -0.156 7.156 12 F -0.188 7.188 13 F -0.184 7.184 14 C -0.148 4.148 15 C -0.130 4.130 16 C 0.071 3.929 17 C 0.181 3.819 18 H 0.065 0.935 19 N -0.710 5.710 20 C -0.249 4.249 21 H 0.071 0.929 22 C -0.006 4.006 23 N -0.930 5.930 24 Si 0.907 3.093 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.390 0.610 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.701 -9.193 13.902 17.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.088 4.088 3 C -0.187 4.187 4 C 0.000 4.000 5 N -0.345 5.345 6 C 0.306 3.694 7 O -0.411 6.411 8 C -0.139 4.139 9 C -0.184 4.184 10 C 0.432 3.568 11 F -0.137 7.137 12 F -0.169 7.169 13 F -0.165 7.165 14 C -0.185 4.185 15 C -0.166 4.166 16 C -0.055 4.055 17 C 0.068 3.932 18 H 0.082 0.918 19 N -0.352 5.352 20 C -0.380 4.380 21 H 0.089 0.911 22 C -0.203 4.203 23 N -0.577 5.577 24 Si 0.738 3.262 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.227 0.773 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.966 -9.149 14.386 18.063 hybrid contribution 0.278 -0.073 -1.083 1.120 sum 6.244 -9.222 13.304 17.350 Atomic orbital electron populations 1.21712 0.93496 1.02128 1.01706 1.21839 0.96490 0.95561 0.94861 1.21691 1.00464 0.94685 1.01841 1.22008 0.99844 0.81662 0.96510 1.48466 1.62322 1.11337 1.12392 1.20055 0.77799 0.85260 0.86301 1.90738 1.51672 1.82706 1.15957 1.21138 1.02584 0.92459 0.97677 1.22029 0.92612 0.98100 1.05688 1.19372 0.87318 0.75475 0.74596 1.93319 1.96539 1.46336 1.77550 1.93132 1.85974 1.61596 1.76199 1.93172 1.79134 1.95189 1.49001 1.23294 1.03892 0.89400 1.01906 1.23043 1.00077 0.99514 0.94012 1.23544 1.00339 1.03043 0.78589 1.21335 0.95318 0.89852 0.86674 0.91758 1.42443 1.13647 1.78615 1.00524 1.19202 0.97191 1.37872 0.83744 0.91104 1.24737 0.96004 1.01636 0.97935 1.69641 1.06741 1.51803 1.29547 0.86279 0.77674 0.78131 0.84133 1.21172 1.21658 1.21167 0.93252 0.91002 0.92571 0.92806 0.91413 0.93135 0.91889 0.91736 0.86998 0.87610 0.86796 0.87246 0.87572 0.87088 0.91319 0.91093 0.77309 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 7.61 37.16 0.28 -1.74 16 2 C -0.09 -1.32 0.85 -152.67 -0.13 -1.45 16 3 C -0.13 -1.83 8.49 37.16 0.32 -1.52 16 4 C 0.12 1.82 6.04 -3.07 -0.02 1.81 16 5 N -0.61 -9.32 3.33 -170.53 -0.57 -9.88 16 6 C 0.52 7.79 7.57 -10.98 -0.08 7.71 16 7 O -0.53 -9.30 13.50 5.56 0.08 -9.23 16 8 C -0.10 -1.15 4.56 -27.89 -0.13 -1.28 16 9 C -0.18 -2.02 1.34 -154.50 -0.21 -2.22 16 10 C 0.49 6.37 3.03 37.16 0.11 6.48 16 11 F -0.16 -2.48 14.25 2.25 0.03 -2.45 16 12 F -0.19 -2.28 15.92 2.25 0.04 -2.24 16 13 F -0.18 -2.49 16.84 2.25 0.04 -2.46 16 14 C -0.15 -1.17 9.63 -26.69 -0.26 -1.43 16 15 C -0.13 -1.20 9.53 -26.70 -0.25 -1.46 16 16 C 0.07 1.14 6.06 -2.54 -0.02 1.12 16 17 C 0.18 3.27 2.93 -65.78 -0.19 3.07 16 18 H 0.06 1.22 8.03 -51.93 -0.42 0.80 16 19 N -0.71 -15.96 5.17 -51.35 -0.27 -16.23 16 20 C -0.25 -6.35 9.98 -15.06 -0.15 -6.50 16 21 H 0.07 1.76 7.83 -52.49 -0.41 1.34 16 22 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 23 N -0.93 -26.28 13.06 55.49 0.72 -25.56 16 24 Si 0.91 21.18 29.55 -169.99 -5.02 16.15 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.23 6.64 -51.93 -0.34 0.89 16 30 H 0.06 0.88 7.44 -51.93 -0.39 0.50 16 31 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.92 7.84 -51.93 -0.41 0.51 16 35 H 0.06 0.97 7.82 -51.93 -0.41 0.56 16 36 H 0.11 1.08 8.08 -51.93 -0.42 0.66 16 37 H 0.11 1.21 7.27 -51.92 -0.38 0.83 16 38 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 0.80 7.54 -51.93 -0.39 0.40 16 40 H 0.11 0.97 8.04 -51.93 -0.42 0.56 16 41 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.07 7.31 -51.93 -0.38 0.69 16 43 H 0.07 1.19 7.71 -51.93 -0.40 0.79 16 44 H 0.39 9.25 5.37 -40.82 -0.22 9.03 16 45 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -29.45 370.15 -6.84 -36.29 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.65 Total: 7.69 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.82 Total: 2.33 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.11 Total: -51.67 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.23 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.11 Total: -7.15 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.45 -6.84 -36.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332386496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.311 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds