Wall clock time and date at job start Tue Mar 31 2020 19:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35963 * 120.56784 * 2 1 4 4 C 1.40848 * 119.33957 * 180.26871 * 3 2 1 5 5 O 1.21854 * 119.75979 * 179.73623 * 4 3 2 6 6 O 1.34381 * 120.48632 * 359.71498 * 4 3 2 7 7 C 1.33730 * 121.20263 * 359.97438 * 6 4 3 8 8 C 1.50699 * 119.68462 * 180.02562 * 7 6 4 9 9 C 1.37588 * 120.62154 * 0.02562 * 7 6 4 10 10 C 1.47523 * 120.25531 * 180.02562 * 9 7 6 11 11 O 1.21589 * 120.00520 * 89.99431 * 10 9 7 12 12 N 1.34787 * 119.99681 * 269.99404 * 10 9 7 13 13 C 1.46924 * 120.63033 * 359.72239 * 12 10 9 14 14 C 1.53194 * 108.77334 * 233.88527 * 13 12 10 15 15 C 1.53038 * 109.31101 * 305.36035 * 14 13 12 16 16 C 1.53045 * 109.53516 * 61.36880 * 15 14 13 17 17 H 1.09001 * 109.49668 * 58.58262 * 16 15 14 18 18 C 1.53002 * 109.52273 * 178.66339 * 16 15 14 19 19 N 1.46498 * 109.47021 * 184.85391 * 18 16 15 20 20 C 1.36942 * 119.99998 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99725 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99855 * 179.97438 * 20 19 18 23 23 N 1.31616 * 120.00204 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99530 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47183 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46693 * 120.00661 * 24 22 20 27 27 H 1.48503 * 109.46994 * 240.00149 * 24 22 20 28 28 C 1.46926 * 120.62918 * 180.02562 * 12 10 9 29 29 H 1.08989 * 109.47134 * 270.28426 * 1 2 3 30 30 H 1.09001 * 109.46678 * 30.28984 * 1 2 3 31 31 H 1.09003 * 109.46565 * 150.28490 * 1 2 3 32 32 H 1.07999 * 120.33155 * 359.96118 * 3 2 1 33 33 H 1.09001 * 109.47432 * 269.97473 * 8 7 6 34 34 H 1.08992 * 109.47604 * 29.97903 * 8 7 6 35 35 H 1.09001 * 109.47179 * 149.98458 * 8 7 6 36 36 H 1.09004 * 109.58777 * 353.67036 * 13 12 10 37 37 H 1.08994 * 109.58607 * 114.09373 * 13 12 10 38 38 H 1.09005 * 109.49558 * 185.41228 * 14 13 12 39 39 H 1.09001 * 109.49919 * 65.31913 * 14 13 12 40 40 H 1.08994 * 109.46487 * 301.34997 * 15 14 13 41 41 H 1.09003 * 109.44983 * 181.38025 * 15 14 13 42 42 H 1.08992 * 109.47238 * 304.85630 * 18 16 15 43 43 H 1.09006 * 109.46752 * 64.85600 * 18 16 15 44 44 H 0.96998 * 119.99826 * 0.02562 * 19 18 16 45 45 H 0.96998 * 119.99678 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.58178 * 245.90575 * 28 12 10 47 47 H 1.08998 * 109.58625 * 6.18591 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6066 1.1405 -0.0058 5 8 4.2339 2.1851 -0.0107 6 8 4.2634 -0.0319 -0.0054 7 6 3.6041 -1.1953 0.0008 8 6 4.3752 -2.4901 0.0015 9 6 2.2285 -1.2213 0.0066 10 6 1.5094 -2.5094 0.0140 11 8 1.2175 -3.0367 1.0700 12 7 1.1760 -3.1018 -1.1499 13 6 1.5165 -2.4740 -2.4338 14 6 0.2422 -2.3494 -3.2750 15 6 -0.4162 -3.7250 -3.4030 16 6 -0.8026 -4.2387 -2.0141 17 1 -1.4830 -3.5308 -1.5407 18 6 -1.4907 -5.5989 -2.1452 19 7 -1.9631 -6.0360 -0.8292 20 6 -2.6140 -7.2337 -0.6985 21 1 -2.7787 -7.8562 -1.5655 22 6 -3.0612 -7.6481 0.5486 23 7 -2.8600 -6.8897 1.6053 24 14 -3.9485 -9.2823 0.7269 25 1 -4.0461 -9.9400 -0.6008 26 1 -3.1916 -10.1574 1.6580 27 1 -5.3124 -9.0488 1.2658 28 6 0.4593 -4.3844 -1.1587 29 1 -0.3633 0.0051 1.0275 30 1 -0.3633 0.8874 -0.5183 31 1 -0.3632 -0.8926 -0.5094 32 1 1.6732 2.1143 -0.0006 33 1 4.5565 -2.8057 -1.0259 34 1 5.3280 -2.3453 0.5106 35 1 3.7987 -3.2560 0.5203 36 1 1.9356 -1.4835 -2.2565 37 1 2.2435 -3.0915 -2.9611 38 1 0.4960 -1.9739 -4.2663 39 1 -0.4480 -1.6593 -2.7898 40 1 0.2835 -4.4209 -3.8658 41 1 -1.3099 -3.6434 -4.0217 42 1 -2.3380 -5.5133 -2.8254 43 1 -0.7820 -6.3283 -2.5376 44 1 -1.8149 -5.4770 -0.0505 45 1 -3.1729 -7.1792 2.4766 46 1 1.1001 -5.1580 -1.5818 47 1 0.1831 -4.6556 -0.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491162546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:10 Heat of formation + Delta-G solvation = -73.181745 kcal Electronic energy + Delta-G solvation = -29812.256251 eV Core-core repulsion = 25768.055029 eV Total energy + Delta-G solvation = -4044.201222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.44590 -40.34311 -38.21961 -37.73609 -36.23100 -34.97558 -33.31133 -32.73105 -31.79950 -29.88769 -29.15738 -28.43360 -25.75520 -25.59589 -24.26869 -23.22806 -22.34221 -21.61240 -20.82207 -19.62955 -18.64321 -18.00606 -17.29207 -17.09199 -16.83953 -16.32276 -15.47928 -15.08577 -14.78686 -14.67596 -14.45177 -14.31893 -14.08094 -13.91235 -13.75806 -13.62625 -13.50210 -13.37826 -13.02091 -12.90369 -12.74409 -12.67187 -12.53851 -12.42288 -12.09416 -11.65545 -11.22690 -11.08959 -10.90113 -10.79194 -10.72972 -10.60249 -10.46266 -10.39294 -10.05592 -9.92677 -9.65549 -8.90288 -8.70129 -8.68517 -6.93158 -5.75566 -3.05504 0.05283 1.02169 1.87709 2.37745 2.75209 2.93671 3.43167 3.48432 3.51076 3.74200 3.88953 4.18607 4.37796 4.54166 4.63268 4.67090 4.75733 4.82657 4.87261 4.91327 5.03843 5.11699 5.20989 5.23575 5.28062 5.31449 5.36354 5.48404 5.52878 5.57839 5.66961 5.73926 5.77020 5.81450 5.85809 5.99973 6.02929 6.12040 6.29761 6.43945 6.49181 6.69972 6.74063 6.80009 7.15375 7.26547 7.70111 8.00968 8.42125 9.53471 10.10463 10.44493 11.46686 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018508 B = 0.002866 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.536195 B = 9767.180986 C =10219.451093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 C -0.280 4.280 4 C 0.499 3.501 5 O -0.476 6.476 6 O -0.256 6.256 7 C 0.184 3.816 8 C -0.121 4.121 9 C -0.251 4.251 10 C 0.574 3.426 11 O -0.512 6.512 12 N -0.601 5.601 13 C 0.106 3.894 14 C -0.133 4.133 15 C -0.113 4.113 16 C -0.107 4.107 17 H 0.074 0.926 18 C 0.161 3.839 19 N -0.733 5.733 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.929 5.929 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.119 3.881 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.164 0.836 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.022 0.978 43 H 0.020 0.980 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.070 0.930 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.600 14.042 -9.859 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 C -0.299 4.299 4 C 0.352 3.648 5 O -0.366 6.366 6 O -0.165 6.165 7 C 0.134 3.866 8 C -0.177 4.177 9 C -0.255 4.255 10 C 0.360 3.640 11 O -0.387 6.387 12 N -0.334 5.334 13 C -0.017 4.017 14 C -0.172 4.172 15 C -0.151 4.151 16 C -0.127 4.127 17 H 0.092 0.908 18 C 0.033 3.967 19 N -0.378 5.378 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.002 4.002 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.181 0.819 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.038 0.962 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.879 14.103 -9.324 21.254 hybrid contribution -0.702 -0.548 0.380 0.969 sum 12.177 13.555 -8.944 20.298 Atomic orbital electron populations 1.21104 0.88844 1.04410 1.04610 1.20318 0.97646 0.90512 0.85549 1.22234 0.92551 1.00267 1.14860 1.19282 0.88424 0.80718 0.76423 1.91010 1.70885 1.25753 1.48928 1.83403 1.44626 1.14598 1.73873 1.22782 0.90325 0.85540 0.87979 1.21168 1.01637 0.89472 1.05399 1.19880 0.92711 0.95760 1.17173 1.17552 0.79194 0.83142 0.84150 1.90922 1.53393 1.64086 1.30268 1.48207 1.56930 1.23140 1.05106 1.21750 0.97584 0.98133 0.84268 1.21919 0.96860 0.98560 0.99815 1.21531 1.00745 0.95624 0.97170 1.21686 0.96501 0.99389 0.95078 0.90753 1.20628 0.95246 0.91062 0.89807 1.42416 1.68922 1.22596 1.03874 1.19235 1.28786 0.95818 0.93494 0.91182 1.24755 1.01752 0.98686 0.95672 1.69677 1.51642 1.37715 0.98684 0.86146 0.79188 0.83591 0.77414 1.20596 1.21862 1.21891 1.21819 0.92294 0.82423 1.03689 0.88631 0.89679 0.90033 0.81872 0.87798 0.88403 0.87598 0.90552 0.90967 0.90739 0.91452 0.91630 0.91369 0.96021 0.96210 0.78114 0.93509 0.91175 0.87577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.67 36.00 0.35 -0.83 16 2 C 0.06 0.61 5.78 -104.06 -0.60 0.01 16 3 C -0.28 -2.77 9.65 -39.41 -0.38 -3.15 16 4 C 0.50 6.09 7.93 31.72 0.25 6.34 16 5 O -0.48 -7.23 17.93 -19.60 -0.35 -7.58 16 6 O -0.26 -2.84 9.81 -17.64 -0.17 -3.01 16 7 C 0.18 1.78 7.03 -34.55 -0.24 1.54 16 8 C -0.12 -0.86 9.80 36.01 0.35 -0.51 16 9 C -0.25 -2.73 3.63 -104.97 -0.38 -3.12 16 10 C 0.57 7.63 4.12 -12.47 -0.05 7.58 16 11 O -0.51 -9.24 16.49 5.29 0.09 -9.16 16 12 N -0.60 -7.03 2.97 -174.03 -0.52 -7.55 16 13 C 0.11 0.88 6.34 -3.71 -0.02 0.86 16 14 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 15 C -0.11 -1.17 5.17 -26.69 -0.14 -1.31 16 16 C -0.11 -1.54 2.37 -90.52 -0.21 -1.75 16 17 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 18 C 0.16 2.99 5.66 -4.04 -0.02 2.97 16 19 N -0.73 -18.01 5.38 -59.91 -0.32 -18.33 16 20 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 24 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 C 0.12 1.73 5.51 -3.73 -0.02 1.71 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.55 8.09 -51.93 -0.42 0.12 16 31 H 0.08 0.82 7.18 -51.93 -0.37 0.45 16 32 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.11 0.92 6.99 -51.93 -0.36 0.56 16 36 H 0.08 0.57 6.22 -51.93 -0.32 0.25 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 10.10 6.89 -40.82 -0.28 9.82 16 45 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.11 2.00 6.20 -51.93 -0.32 1.68 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -34.59 384.21 -8.44 -43.03 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -7.12 Total: 5.18 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.53 Total: 1.81 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.11 Total: -53.32 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.44 Total: -19.75 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.59 -8.44 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491162546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.152 kcal (2) G-P(sol) polarization free energy of solvation -34.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds