Wall clock time and date at job start Tue Mar 31 2020 19:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 110.83296 * 2 1 4 4 C 1.54701 * 110.94240 * 236.28234 * 2 1 3 5 5 O 1.43849 * 102.76506 * 267.18170 * 4 2 1 6 6 C 1.35997 * 109.30516 * 332.14872 * 5 4 2 7 7 C 1.39591 * 129.72019 * 198.40226 * 6 5 4 8 8 C 1.37470 * 120.42681 * 181.01899 * 7 6 5 9 9 C 1.39758 * 120.20216 * 0.04597 * 8 7 6 10 10 C 1.47601 * 120.26442 * 179.78516 * 9 8 7 11 11 O 1.21587 * 119.99553 * 180.02562 * 10 9 8 12 12 N 1.34776 * 120.00034 * 0.02562 * 10 9 8 13 13 C 1.46503 * 119.99787 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.46908 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.47562 * 59.99964 * 14 13 12 16 16 O 1.42897 * 109.47122 * 299.99912 * 14 13 12 17 17 C 1.53003 * 109.47194 * 179.97438 * 14 13 12 18 18 N 1.46499 * 109.47391 * 184.99697 * 17 14 13 19 19 C 1.36937 * 119.99822 * 180.02562 * 18 17 14 20 20 H 1.07996 * 120.00463 * 0.02562 * 19 18 17 21 21 C 1.38821 * 119.99706 * 180.02562 * 19 18 17 22 22 N 1.31613 * 119.99754 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99857 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47261 * 90.00143 * 23 21 19 25 25 H 1.48503 * 109.46814 * 209.99837 * 23 21 19 26 26 H 1.48499 * 109.47471 * 329.99997 * 23 21 19 27 27 C 1.39809 * 119.46654 * 359.80887 * 9 8 7 28 28 C 1.37311 * 119.86006 * 359.97438 * 27 9 8 29 29 H 1.08996 * 109.47351 * 59.30035 * 1 2 3 30 30 H 1.08999 * 109.46680 * 179.29733 * 1 2 3 31 31 H 1.08998 * 109.47007 * 299.29594 * 1 2 3 32 32 H 1.09004 * 109.46632 * 60.70448 * 3 2 1 33 33 H 1.08992 * 109.46925 * 180.70115 * 3 2 1 34 34 H 1.09003 * 109.47470 * 300.70428 * 3 2 1 35 35 H 1.09001 * 110.74793 * 25.52331 * 4 2 1 36 36 H 1.09000 * 110.74395 * 148.86642 * 4 2 1 37 37 H 1.07999 * 119.78623 * 1.04992 * 7 6 5 38 38 H 1.08001 * 119.89807 * 180.02562 * 8 7 6 39 39 H 0.96991 * 120.00230 * 0.02562 * 12 10 9 40 40 H 1.09002 * 109.47270 * 299.99995 * 13 12 10 41 41 H 1.09001 * 109.47039 * 60.00096 * 13 12 10 42 42 H 0.96700 * 114.00161 * 299.99954 * 16 14 13 43 43 H 1.09000 * 109.47146 * 305.00498 * 17 14 13 44 44 H 1.09002 * 109.46999 * 64.99785 * 17 14 13 45 45 H 0.96993 * 120.00014 * 0.02562 * 18 17 14 46 46 H 0.96998 * 120.00035 * 179.97438 * 22 21 19 47 47 H 1.07998 * 120.07076 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0742 1.4300 0.0000 4 6 2.0830 -0.8020 -1.2018 5 8 2.2610 -2.1186 -0.6503 6 6 2.4919 -2.0189 0.6862 7 6 3.0495 -2.9474 1.5668 8 6 3.1767 -2.6503 2.9030 9 6 2.7470 -1.4137 3.3923 10 6 2.8786 -1.0951 4.8275 11 8 2.5027 -0.0180 5.2480 12 7 3.4154 -1.9982 5.6718 13 6 3.5454 -1.6821 7.0964 14 6 4.1807 -2.8675 7.8258 15 1 5.1669 -3.0662 7.4062 16 8 3.3543 -4.0225 7.6676 17 6 4.3172 -2.5373 9.3135 18 7 5.0326 -3.6215 9.9909 19 6 5.2739 -3.5466 11.3367 20 1 4.9364 -2.6885 11.8989 21 6 5.9523 -4.5737 11.9784 22 7 6.1846 -4.5015 13.2719 23 14 6.5366 -6.0577 11.0059 24 1 7.9079 -5.8058 10.4947 25 1 6.5485 -7.2533 11.8866 26 1 5.6180 -6.2937 9.8632 27 6 2.1910 -0.4811 2.5115 28 6 2.0727 -0.7863 1.1780 29 1 -0.3634 0.5246 -0.8836 30 1 -0.3632 -1.0276 -0.0126 31 1 -0.3633 0.5028 0.8962 32 1 1.7334 1.9484 0.8963 33 1 3.1637 1.4041 -0.0126 34 1 1.7130 1.9563 -0.8836 35 1 1.3620 -0.8194 -2.0190 36 1 3.0359 -0.3907 -1.5348 37 1 3.3836 -3.9051 1.1960 38 1 3.6098 -3.3748 3.5767 39 1 3.7156 -2.8573 5.3363 40 1 4.1761 -0.8014 7.2171 41 1 2.5592 -1.4831 7.5159 42 1 2.4598 -3.9173 8.0194 43 1 4.8730 -1.6069 9.4297 44 1 3.3261 -2.4256 9.7533 45 1 5.3354 -4.3924 9.4860 46 1 6.6583 -5.2194 13.7204 47 1 1.8561 0.4776 2.8790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497016521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:15 Heat of formation + Delta-G solvation = -82.087848 kcal Electronic energy + Delta-G solvation = -27903.057512 eV Core-core repulsion = 23858.470093 eV Total energy + Delta-G solvation = -4044.587419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.90983 -40.02075 -37.98144 -37.23408 -35.69211 -34.56958 -34.16142 -31.56605 -30.95522 -30.70488 -29.19409 -27.90510 -27.08570 -25.87490 -23.79413 -23.30228 -22.15128 -21.54031 -20.73163 -20.07148 -18.09574 -17.73210 -17.63934 -17.00486 -16.52598 -16.12960 -15.98540 -15.69928 -14.95179 -14.77008 -14.63914 -14.51390 -14.14782 -14.06684 -13.76838 -13.74528 -13.43317 -13.29729 -13.24057 -13.15675 -12.75534 -12.45681 -12.39251 -12.17455 -12.02503 -11.95345 -11.49084 -11.32267 -11.24671 -10.97748 -10.88031 -10.82741 -10.24844 -10.16159 -9.77259 -9.57207 -9.40167 -9.24004 -8.94056 -8.59973 -7.27241 -5.78701 -3.15055 0.48209 0.89235 2.53135 2.77976 2.96373 3.38608 3.44140 3.46070 3.47773 3.71139 3.97872 4.28798 4.34319 4.45318 4.53981 4.57054 4.59223 4.67085 4.75644 4.83015 4.85946 4.95826 5.08358 5.10487 5.12414 5.25503 5.29770 5.33223 5.44430 5.50243 5.57729 5.59031 5.66879 5.70112 5.74610 5.76748 5.84831 5.90213 5.94833 6.03044 6.26948 6.40667 6.53148 6.65386 7.35448 7.75034 7.96882 8.06422 8.39676 9.19033 9.90959 10.10458 11.39287 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028007 B = 0.001926 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.510019 B =14530.977261 C =15219.475716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 C -0.138 4.138 4 C 0.057 3.943 5 O -0.300 6.300 6 C 0.133 3.867 7 C -0.146 4.146 8 C -0.047 4.047 9 C -0.163 4.163 10 C 0.561 3.439 11 O -0.542 6.542 12 N -0.717 5.717 13 C 0.090 3.910 14 C 0.084 3.916 15 H 0.105 0.895 16 O -0.557 6.557 17 C 0.131 3.869 18 N -0.749 5.749 19 C -0.249 4.249 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.933 5.933 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.273 1.273 27 C -0.005 4.005 28 C -0.175 4.175 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.404 0.596 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.376 0.624 43 H 0.038 0.962 44 H 0.032 0.968 45 H 0.366 0.634 46 H 0.260 0.740 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.453 8.624 -33.259 35.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.018 4.018 5 O -0.213 6.213 6 C 0.087 3.913 7 C -0.164 4.164 8 C -0.066 4.066 9 C -0.167 4.167 10 C 0.349 3.651 11 O -0.421 6.421 12 N -0.369 5.369 13 C -0.034 4.034 14 C 0.025 3.975 15 H 0.123 0.877 16 O -0.362 6.362 17 C 0.003 3.997 18 N -0.396 5.396 19 C -0.378 4.378 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.580 5.580 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.199 1.199 27 C -0.024 4.024 28 C -0.176 4.176 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.240 0.760 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.224 0.776 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.199 0.801 46 H 0.070 0.930 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.186 9.051 -33.117 35.811 hybrid contribution 0.148 -1.147 -0.372 1.215 sum -10.038 7.904 -33.489 35.844 Atomic orbital electron populations 1.21806 0.92103 1.02659 1.02748 1.20814 0.96991 0.96135 0.91288 1.21790 1.01281 0.93538 1.02890 1.24080 1.01755 0.79829 0.96125 1.86822 1.86014 1.30080 1.18383 1.19849 0.93044 0.94402 0.84053 1.20180 1.04008 1.00307 0.91950 1.21071 0.95645 0.95316 0.94532 1.19758 1.07347 0.96006 0.93553 1.18060 0.77520 0.84028 0.85509 1.90785 1.49496 1.23473 1.78300 1.45803 1.63254 1.19286 1.08588 1.22100 1.02318 0.99109 0.79877 1.22462 0.94543 0.84379 0.96166 0.87734 1.86542 1.27724 1.38148 1.83797 1.21176 0.96674 0.92804 0.89048 1.42568 1.68891 1.21007 1.07088 1.19044 1.30727 1.05219 0.82831 0.89246 1.24680 1.00542 0.98308 0.95520 1.69703 1.46360 1.34043 1.07926 0.86534 0.78891 0.83539 0.79595 1.21106 1.21736 1.19857 1.20297 0.93169 0.98840 0.90063 1.20596 1.05399 0.96630 0.94973 0.91642 0.92043 0.91553 0.91438 0.91969 0.91697 0.87315 0.90072 0.84629 0.84446 0.76021 0.90071 0.90698 0.77609 0.94403 0.95003 0.80114 0.93009 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 8.61 37.16 0.32 -0.44 16 2 C -0.05 -0.33 1.03 -154.28 -0.16 -0.49 16 3 C -0.14 -0.70 8.53 37.16 0.32 -0.39 16 4 C 0.06 0.32 7.10 38.05 0.27 0.59 16 5 O -0.30 -2.64 11.10 -19.73 -0.22 -2.86 16 6 C 0.13 1.22 7.04 -38.73 -0.27 0.95 16 7 C -0.15 -1.24 10.05 -39.36 -0.40 -1.63 16 8 C -0.05 -0.40 9.52 -39.29 -0.37 -0.78 16 9 C -0.16 -1.72 5.88 -104.92 -0.62 -2.33 16 10 C 0.56 7.06 7.77 -12.44 -0.10 6.97 16 11 O -0.54 -8.64 16.36 5.29 0.09 -8.55 16 12 N -0.72 -7.93 5.40 -61.33 -0.33 -8.26 16 13 C 0.09 1.10 5.34 -4.04 -0.02 1.07 16 14 C 0.08 1.16 3.08 -26.73 -0.08 1.08 16 15 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 16 O -0.56 -7.77 13.03 -35.23 -0.46 -8.23 16 17 C 0.13 2.37 5.90 -4.04 -0.02 2.35 16 18 N -0.75 -17.56 5.35 -59.91 -0.32 -17.88 16 19 C -0.25 -7.04 10.47 -15.06 -0.16 -7.19 16 20 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 21 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -29.37 13.97 55.49 0.78 -28.59 16 23 Si 0.88 22.20 27.74 -169.99 -4.71 17.49 16 24 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.27 -6.52 6.52 56.52 0.37 -6.15 16 27 C 0.00 -0.05 9.47 -39.33 -0.37 -0.42 16 28 C -0.18 -1.54 5.03 -104.13 -0.52 -2.06 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.11 0.39 7.92 -51.93 -0.41 -0.02 16 36 H 0.08 0.38 7.91 -51.93 -0.41 -0.03 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.14 0.89 6.40 -52.49 -0.34 0.56 16 39 H 0.40 3.74 6.38 -40.82 -0.26 3.48 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.38 4.31 9.05 45.56 0.41 4.73 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.37 8.51 5.53 -40.82 -0.23 8.29 16 46 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 47 H 0.14 1.39 7.66 -52.49 -0.40 0.98 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -35.41 388.81 -7.91 -43.32 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.30 Total: 10.34 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -2.29 Total: -2.64 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.12 Total: -54.73 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.59 Total: -19.64 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.41 -7.91 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497016521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.768 kcal (2) G-P(sol) polarization free energy of solvation -35.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds