Wall clock time and date at job start Tue Mar 31 2020 18:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50695 * 109.39597 * 2 1 4 4 O 1.21287 * 119.99799 * 120.11181 * 3 2 1 5 5 N 1.34774 * 120.00330 * 300.11084 * 3 2 1 6 6 C 1.46500 * 120.00036 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47097 * 179.97438 * 6 5 3 8 8 H 1.08996 * 109.47614 * 304.99983 * 7 6 5 9 9 O 1.42901 * 109.46960 * 65.00003 * 7 6 5 10 10 C 1.52997 * 109.47217 * 184.99717 * 7 6 5 11 11 N 1.46501 * 109.47444 * 180.02562 * 10 7 6 12 12 C 1.36928 * 120.00525 * 180.02562 * 11 10 7 13 13 H 1.08007 * 120.00181 * 359.97438 * 12 11 10 14 14 C 1.38816 * 120.00351 * 180.02562 * 12 11 10 15 15 N 1.31618 * 119.99893 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99846 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47090 * 90.00043 * 16 14 12 18 18 H 1.48505 * 109.47129 * 209.99954 * 16 14 12 19 19 H 1.48499 * 109.47454 * 329.99752 * 16 14 12 20 20 C 1.53062 * 109.43355 * 119.88921 * 2 1 3 21 21 C 1.53404 * 108.31278 * 168.22746 * 20 2 1 22 22 O 1.42829 * 108.37608 * 295.30465 * 21 20 2 23 23 C 1.35844 * 117.83817 * 49.27065 * 22 21 20 24 24 C 1.39141 * 118.49589 * 162.69290 * 23 22 21 25 25 C 1.37970 * 120.21682 * 179.76587 * 24 23 22 26 26 C 1.38295 * 119.95254 * 359.96192 * 25 24 23 27 27 C 1.38105 * 119.98853 * 0.09035 * 26 25 24 28 28 C 1.38369 * 121.80372 * 342.59873 * 23 22 21 29 29 H 1.09001 * 109.47074 * 179.88750 * 1 2 3 30 30 H 1.08995 * 109.46828 * 299.88762 * 1 2 3 31 31 H 1.09000 * 109.47261 * 59.88790 * 1 2 3 32 32 H 0.96998 * 120.00164 * 0.02562 * 5 3 2 33 33 H 1.09002 * 109.47211 * 299.99699 * 6 5 3 34 34 H 1.08994 * 109.47308 * 60.00307 * 6 5 3 35 35 H 0.96696 * 114.00040 * 60.00332 * 9 7 6 36 36 H 1.09001 * 109.47626 * 300.00234 * 10 7 6 37 37 H 1.09008 * 109.46806 * 60.00386 * 10 7 6 38 38 H 0.97002 * 119.99830 * 0.02562 * 11 10 7 39 39 H 0.97002 * 119.99754 * 180.02562 * 15 14 12 40 40 H 1.09006 * 109.69010 * 48.52479 * 20 2 1 41 41 H 1.08994 * 109.73063 * 287.95567 * 20 2 1 42 42 H 1.09007 * 109.67844 * 175.58563 * 21 20 2 43 43 H 1.08999 * 109.68421 * 55.03004 * 21 20 2 44 44 H 1.08003 * 119.89489 * 359.77348 * 24 23 22 45 45 H 1.07997 * 120.02201 * 180.23750 * 25 24 23 46 46 H 1.07996 * 120.00133 * 180.02562 * 26 25 24 47 47 H 1.07998 * 119.84107 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0305 1.4214 0.0000 4 8 2.7290 1.8184 0.9086 5 7 1.7020 2.2516 -1.0096 6 6 2.1891 3.6332 -1.0099 7 6 1.6763 4.3545 -2.2580 8 1 1.9637 3.7923 -3.1464 9 8 0.2521 4.4557 -2.1983 10 6 2.2848 5.7568 -2.3228 11 7 1.7934 6.4477 -3.5175 12 6 2.2050 7.7254 -3.7876 13 1 2.8917 8.2242 -3.1196 14 6 1.7389 8.3803 -4.9194 15 7 0.9017 7.7728 -5.7332 16 14 2.3000 10.1236 -5.2873 17 1 3.5286 10.0828 -6.1204 18 1 1.2284 10.8442 -6.0206 19 1 2.5890 10.8299 -4.0134 20 6 2.0393 -0.7193 1.2514 21 6 3.5442 -0.9670 1.0862 22 8 3.7352 -1.8654 -0.0076 23 6 3.0983 -1.5881 -1.1750 24 6 3.5394 -2.2139 -2.3368 25 6 2.9152 -1.9618 -3.5412 26 6 1.8470 -1.0851 -3.5951 27 6 1.4072 -0.4613 -2.4441 28 6 2.0317 -0.7085 -1.2327 29 1 -0.3633 -1.0277 -0.0020 30 1 -0.3633 0.5121 0.8910 31 1 -0.3634 0.5156 -0.8890 32 1 1.1432 1.9342 -1.7362 33 1 1.8271 4.1463 -0.1188 34 1 3.2790 3.6343 -1.0122 35 1 -0.0756 4.9448 -1.4312 36 1 1.9974 6.3191 -1.4344 37 1 3.3712 5.6796 -2.3684 38 1 1.1764 6.0000 -4.1173 39 1 0.5763 8.2302 -6.5243 40 1 1.5205 -1.6713 1.3646 41 1 1.8635 -0.0985 2.1299 42 1 3.9459 -1.4085 1.9983 43 1 4.0510 -0.0243 0.8799 44 1 4.3730 -2.8994 -2.2958 45 1 3.2577 -2.4522 -4.4403 46 1 1.3576 -0.8875 -4.5373 47 1 0.5726 0.2227 -2.4888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497092987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:59 Heat of formation + Delta-G solvation = -117.219433 kcal Electronic energy + Delta-G solvation = -29321.889533 eV Core-core repulsion = 25275.778694 eV Total energy + Delta-G solvation = -4046.110839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.47624 -40.43774 -39.00663 -38.50420 -36.29900 -36.09918 -35.35860 -33.20351 -31.73592 -31.26374 -30.64945 -29.58753 -27.26659 -25.53765 -24.97023 -24.25910 -23.15256 -22.77153 -22.31842 -20.52168 -19.23839 -18.86502 -18.46109 -17.81978 -17.48778 -17.22679 -16.68467 -16.52038 -16.35846 -16.05174 -15.86699 -15.50011 -15.18727 -14.99160 -14.92050 -14.62985 -14.42667 -14.20963 -14.13153 -13.79550 -13.59269 -13.32871 -13.22755 -12.97617 -12.95731 -12.79462 -12.75997 -12.60295 -12.17376 -12.06500 -11.98878 -11.82532 -11.66718 -11.39327 -11.19158 -10.99206 -10.84035 -10.19954 -9.79138 -9.18047 -9.02134 -7.95561 -5.25109 0.24707 0.43110 1.47461 1.48999 1.50114 1.57441 2.02237 2.30863 2.55294 2.79521 3.34155 3.34689 3.41976 3.48974 3.54782 3.63568 3.78410 3.80059 3.99530 4.17207 4.21430 4.25382 4.28477 4.38267 4.45002 4.46293 4.50728 4.57031 4.58485 4.65816 4.74998 4.78374 4.90720 4.92934 4.96696 5.02546 5.13453 5.17752 5.30573 5.32462 5.44382 5.47394 5.57433 5.82727 6.25487 6.40118 6.42135 6.77415 7.08867 7.32975 8.07695 8.31507 9.27518 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017417 B = 0.002541 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.247365 B =11017.451372 C =11663.805563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.031 4.031 3 C 0.522 3.478 4 O -0.571 6.571 5 N -0.708 5.708 6 C 0.101 3.899 7 C 0.110 3.890 8 H 0.098 0.902 9 O -0.560 6.560 10 C 0.123 3.877 11 N -0.739 5.739 12 C -0.250 4.250 13 H 0.075 0.925 14 C -0.074 4.074 15 N -0.966 5.966 16 Si 0.974 3.026 17 H -0.287 1.287 18 H -0.295 1.295 19 H -0.270 1.270 20 C -0.132 4.132 21 C 0.056 3.944 22 O -0.329 6.329 23 C 0.118 3.882 24 C -0.163 4.163 25 C -0.082 4.082 26 C -0.154 4.154 27 C -0.088 4.088 28 C -0.165 4.165 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.410 0.590 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.385 0.615 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.378 0.622 39 H 0.252 0.748 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.131 0.869 43 H 0.052 0.948 44 H 0.139 0.861 45 H 0.154 0.846 46 H 0.146 0.854 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -24.058 12.056 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.034 4.034 3 C 0.309 3.691 4 O -0.451 6.451 5 N -0.360 5.360 6 C -0.024 4.024 7 C 0.050 3.950 8 H 0.116 0.884 9 O -0.367 6.367 10 C -0.005 4.005 11 N -0.382 5.382 12 C -0.381 4.381 13 H 0.093 0.907 14 C -0.266 4.266 15 N -0.617 5.617 16 Si 0.803 3.197 17 H -0.214 1.214 18 H -0.221 1.221 19 H -0.194 1.194 20 C -0.170 4.170 21 C -0.019 4.019 22 O -0.243 6.243 23 C 0.073 3.927 24 C -0.181 4.181 25 C -0.099 4.099 26 C -0.172 4.172 27 C -0.105 4.105 28 C -0.166 4.166 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.247 0.753 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.234 0.766 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.210 0.790 39 H 0.060 0.940 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.149 0.851 43 H 0.071 0.929 44 H 0.157 0.843 45 H 0.171 0.829 46 H 0.163 0.837 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.738 -24.088 12.249 27.033 hybrid contribution -0.136 1.409 -0.336 1.455 sum 0.602 -22.679 11.913 25.624 Atomic orbital electron populations 1.21935 0.89252 1.04490 1.03607 1.19661 0.99177 0.89953 0.94633 1.20785 0.79393 0.87737 0.81177 1.90663 1.39283 1.77901 1.37214 1.45875 1.53033 1.11552 1.25507 1.21888 0.99810 0.82066 0.98624 1.22052 0.81301 0.94508 0.97177 0.88368 1.86549 1.19781 1.78396 1.51971 1.21386 0.97013 0.92089 0.90004 1.42389 1.55392 1.14145 1.26272 1.19629 1.21361 0.91585 1.05573 0.90682 1.25582 1.00516 1.02608 0.97916 1.69830 1.37390 1.38823 1.15619 0.85141 0.76891 0.79798 0.77908 1.21389 1.22106 1.19437 1.22152 0.95905 1.01911 0.97014 1.23175 0.96868 0.93260 0.88585 1.85965 1.67954 1.50727 1.19649 1.19005 0.91490 0.95831 0.86407 1.20879 1.02977 1.03947 0.90334 1.21321 0.94611 0.96593 0.97420 1.21385 0.98384 0.98367 0.99070 1.21177 0.99171 0.98919 0.91281 1.19532 0.98873 1.02727 0.95447 0.89603 0.90970 0.90837 0.75276 0.90415 0.91039 0.76564 0.95048 0.95137 0.78988 0.93952 0.88224 0.88583 0.85124 0.92923 0.84324 0.82863 0.83659 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.89 71.98 0.57 -1.29 16 2 C -0.03 -0.58 0.55 -53.63 -0.03 -0.61 16 3 C 0.52 12.59 6.13 87.66 0.54 13.13 16 4 O -0.57 -17.23 14.37 -3.05 -0.04 -17.27 16 5 N -0.71 -15.93 5.23 -463.06 -2.42 -18.36 16 6 C 0.10 2.53 5.31 86.38 0.46 2.99 16 7 C 0.11 3.21 3.09 30.59 0.09 3.30 16 8 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 9 O -0.56 -16.55 13.03 -148.98 -1.94 -18.50 16 10 C 0.12 4.61 5.92 86.38 0.51 5.12 16 11 N -0.74 -36.99 5.49 -343.44 -1.89 -38.87 16 12 C -0.25 -13.88 9.99 84.04 0.84 -13.04 16 13 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 14 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 15 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 16 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 17 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 18 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 C -0.13 -2.27 4.60 30.75 0.14 -2.13 16 21 C 0.06 1.09 6.87 72.12 0.50 1.59 16 22 O -0.33 -7.41 10.27 -91.80 -0.94 -8.35 16 23 C 0.12 2.59 6.47 22.52 0.15 2.74 16 24 C -0.16 -3.11 9.94 22.42 0.22 -2.89 16 25 C -0.08 -1.30 10.04 22.22 0.22 -1.08 16 26 C -0.15 -2.50 10.04 22.25 0.22 -2.28 16 27 C -0.09 -1.53 8.09 22.30 0.18 -1.35 16 28 C -0.16 -3.28 4.68 -19.75 -0.09 -3.37 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.92 5.95 -2.39 -0.01 0.91 16 32 H 0.41 8.17 5.67 -92.71 -0.53 7.64 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.39 9.32 9.04 -74.06 -0.67 8.65 16 36 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.38 20.42 7.54 -92.71 -0.70 19.72 16 39 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 40 H 0.10 1.39 8.10 -2.38 -0.02 1.37 16 41 H 0.10 1.64 7.69 -2.39 -0.02 1.62 16 42 H 0.13 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.05 1.30 6.45 -2.39 -0.02 1.28 16 44 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 45 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 46 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 47 H 0.14 1.97 5.31 -2.91 -0.02 1.95 16 Total: -1.00 -71.82 378.66 -0.82 -72.64 By element: Atomic # 1 Polarization: 43.37 SS G_CDS: -0.88 Total: 42.49 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 4.99 Total: -2.92 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -4.03 Total: -116.04 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -2.93 Total: -44.12 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -71.82 -0.82 -72.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497092987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.579 kcal (2) G-P(sol) polarization free energy of solvation -71.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds