Wall clock time and date at job start Tue Mar 31 2020 18:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35124 * 125.61879 * 2 1 4 4 C 1.40372 * 107.11466 * 179.77957 * 3 2 1 5 5 C 1.50700 * 126.64593 * 180.22098 * 4 3 2 6 6 C 1.36548 * 106.70499 * 0.34991 * 4 3 2 7 7 C 1.46654 * 125.98143 * 179.91180 * 6 4 3 8 8 O 1.21687 * 120.00489 * 359.71362 * 7 6 4 9 9 N 1.34779 * 119.99686 * 179.71349 * 7 6 4 10 10 C 1.46495 * 120.00270 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47277 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.82420 * 59.43784 * 11 10 9 13 13 C 1.54473 * 109.90712 * 180.37627 * 11 10 9 14 14 C 1.55510 * 102.38818 * 140.92125 * 13 11 10 15 15 C 1.53881 * 100.75539 * 327.03171 * 14 13 11 16 16 C 1.52377 * 115.67709 * 263.23108 * 15 14 13 17 17 N 1.47275 * 87.70343 * 218.74807 * 16 15 14 18 18 C 1.36935 * 135.93442 * 206.17406 * 17 16 15 19 19 H 1.08006 * 120.00018 * 7.56890 * 18 17 16 20 20 C 1.38818 * 120.00126 * 187.55930 * 18 17 16 21 21 N 1.31612 * 119.99984 * 174.51404 * 20 18 17 22 22 Si 1.86797 * 119.99618 * 354.51503 * 20 18 17 23 23 H 1.48497 * 109.46833 * 174.94589 * 22 20 18 24 24 H 1.48497 * 109.47523 * 294.94736 * 22 20 18 25 25 H 1.48508 * 109.47271 * 54.94852 * 22 20 18 26 26 C 1.47274 * 88.12736 * 26.43491 * 17 16 15 27 27 O 1.42402 * 106.67424 * 34.97284 * 15 14 13 28 28 O 1.33935 * 125.61073 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47590 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47252 * 299.98124 * 1 2 3 31 31 H 1.09000 * 109.47347 * 59.97692 * 1 2 3 32 32 H 1.07996 * 126.44013 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.46948 * 270.15478 * 5 4 3 34 34 H 1.09004 * 109.46917 * 30.15178 * 5 4 3 35 35 H 1.09001 * 109.46848 * 150.14887 * 5 4 3 36 36 H 0.97008 * 120.00033 * 359.97438 * 9 7 6 37 37 H 1.09008 * 109.47139 * 60.00048 * 10 9 7 38 38 H 1.08997 * 109.47169 * 300.00072 * 10 9 7 39 39 H 1.09001 * 110.82679 * 259.14259 * 13 11 10 40 40 H 1.09004 * 110.82915 * 22.50098 * 13 11 10 41 41 H 1.09002 * 111.16142 * 209.15506 * 14 13 11 42 42 H 1.09003 * 111.15706 * 84.90239 * 14 13 11 43 43 H 1.08996 * 113.51643 * 104.03947 * 16 15 14 44 44 H 1.09006 * 113.51474 * 333.45290 * 16 15 14 45 45 H 0.96998 * 120.00657 * 354.90781 * 21 20 18 46 46 H 1.08999 * 113.51507 * 88.27374 * 26 17 16 47 47 H 1.08997 * 113.50859 * 218.85232 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0984 0.0000 4 6 3.6251 0.6529 0.0052 5 6 4.8618 1.5141 0.0118 6 6 3.5822 -0.7119 0.0001 7 6 4.7413 -1.6103 0.0010 8 8 5.8679 -1.1502 0.0013 9 7 4.5588 -2.9457 0.0013 10 6 5.7166 -3.8433 0.0016 11 6 5.2359 -5.2958 0.0014 12 1 4.6250 -5.4828 -0.8817 13 6 6.4494 -6.2515 0.0112 14 6 5.9758 -7.3823 0.9679 15 6 5.1000 -6.5816 1.9476 16 6 5.7785 -6.1570 3.2442 17 7 4.5105 -6.4492 3.9341 18 6 3.8890 -6.0172 5.0752 19 1 4.3013 -5.1906 5.6349 20 6 2.7287 -6.6415 5.5124 21 7 2.1912 -6.2991 6.6640 22 14 1.9306 -7.9674 4.4664 23 1 0.7849 -8.5572 5.2045 24 1 1.4464 -7.3709 3.1957 25 1 2.9259 -9.0283 4.1676 26 6 4.2064 -7.4140 2.8637 27 8 4.4699 -5.5555 1.1874 28 8 2.2869 -1.0889 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5136 0.8902 31 1 -0.3634 0.5142 -0.8898 32 1 1.9613 2.1259 0.0004 33 1 5.1628 1.7254 -1.0143 34 1 4.6499 2.4502 0.5284 35 1 5.6670 0.9895 0.5261 36 1 3.6608 -3.3125 0.0014 37 1 6.3186 -3.6595 0.8916 38 1 6.3186 -3.6601 -0.8884 39 1 6.6417 -6.6440 -0.9873 40 1 7.3337 -5.7510 0.4059 41 1 6.8200 -7.8429 1.4810 42 1 5.3875 -8.1286 0.4340 43 1 6.0526 -5.1023 3.2664 44 1 6.5967 -6.8128 3.5419 45 1 2.6442 -5.6647 7.2412 46 1 4.5937 -8.4144 3.0570 47 1 3.1580 -7.4168 2.5659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645000058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:44 Heat of formation + Delta-G solvation = -31.869991 kcal Electronic energy + Delta-G solvation = -29274.219014 eV Core-core repulsion = 25231.809204 eV Total energy + Delta-G solvation = -4042.409810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.80268 -41.68992 -40.53698 -38.39520 -36.02423 -35.02854 -34.50614 -33.46565 -33.16768 -31.17297 -29.21870 -28.94070 -27.77367 -27.15862 -25.17986 -23.09849 -22.67219 -22.52635 -22.22288 -20.83525 -20.67669 -19.56222 -19.24432 -17.88312 -17.60307 -17.47821 -17.14084 -16.54052 -16.15758 -16.03226 -15.65309 -15.52795 -15.34621 -15.05096 -14.67253 -14.52757 -14.28383 -14.10988 -14.07378 -13.80574 -13.71707 -13.66681 -13.43165 -13.32969 -13.28745 -12.66687 -12.65273 -12.55269 -12.47120 -12.27363 -12.14119 -11.56394 -11.35923 -11.28259 -11.10737 -11.01074 -10.70836 -10.37566 -10.31483 -9.46736 -9.25628 -8.65938 -5.49806 -0.07926 1.26045 1.34911 1.46855 1.56052 1.66267 1.98157 2.10456 2.52639 2.63457 2.98853 3.17595 3.40667 3.54106 3.61657 3.73001 3.73156 3.79589 3.84999 4.14939 4.34886 4.39722 4.42628 4.43213 4.49265 4.52009 4.56325 4.60604 4.67514 4.68256 4.70824 4.71712 4.79396 4.85767 4.91880 4.93463 5.02185 5.09892 5.12840 5.15963 5.17787 5.24042 5.32396 5.46921 5.81144 5.90574 6.21855 6.32013 6.66053 6.90082 7.29109 8.23949 8.85945 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010339 B = 0.003596 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.579114 B = 7783.665581 C = 9369.457708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.024 3.976 3 C -0.232 4.232 4 C -0.088 4.088 5 C -0.091 4.091 6 C -0.128 4.128 7 C 0.598 3.402 8 O -0.553 6.553 9 N -0.709 5.709 10 C 0.113 3.887 11 C 0.060 3.940 12 H 0.110 0.890 13 C -0.132 4.132 14 C -0.127 4.127 15 C 0.087 3.913 16 C 0.104 3.896 17 N -0.659 5.659 18 C -0.291 4.291 19 H 0.039 0.961 20 C -0.086 4.086 21 N -0.971 5.971 22 Si 1.112 2.888 23 H -0.302 1.302 24 H -0.279 1.279 25 H -0.250 1.250 26 C 0.092 3.908 27 O -0.367 6.367 28 O -0.177 6.177 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.186 0.814 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.411 0.589 37 H 0.052 0.948 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.029 0.971 44 H 0.073 0.927 45 H 0.243 0.757 46 H 0.083 0.917 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 7.659 -23.869 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.028 4.028 3 C -0.250 4.250 4 C -0.091 4.091 5 C -0.148 4.148 6 C -0.179 4.179 7 C 0.386 3.614 8 O -0.434 6.434 9 N -0.358 5.358 10 C -0.010 4.010 11 C 0.003 3.997 12 H 0.127 0.873 13 C -0.170 4.170 14 C -0.165 4.165 15 C 0.046 3.954 16 C -0.021 4.021 17 N -0.388 5.388 18 C -0.419 4.419 19 H 0.057 0.943 20 C -0.277 4.277 21 N -0.616 5.616 22 Si 0.937 3.063 23 H -0.230 1.230 24 H -0.206 1.206 25 H -0.174 1.174 26 C -0.032 4.032 27 O -0.286 6.286 28 O -0.074 6.074 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.136 0.864 32 H 0.203 0.797 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.246 0.754 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.140 0.860 40 H 0.104 0.896 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.047 0.953 44 H 0.091 0.909 45 H 0.052 0.948 46 H 0.100 0.900 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.637 6.840 -23.697 24.805 hybrid contribution 1.061 1.478 1.293 2.232 sum 3.698 8.318 -22.405 24.183 Atomic orbital electron populations 1.20678 0.81600 1.05317 1.05975 1.23712 0.95967 0.83552 0.99555 1.21804 0.90684 1.01252 1.11305 1.21031 0.97936 0.91901 0.98252 1.20434 0.92621 0.98293 1.03415 1.21771 0.82243 0.94727 1.19123 1.16706 0.86167 0.81979 0.76529 1.90785 1.23053 1.76530 1.53040 1.45834 1.11591 1.05066 1.73305 1.21969 0.87718 0.88544 1.02765 1.23394 0.94681 0.92904 0.88766 0.87255 1.23108 0.96479 0.94684 1.02735 1.23020 0.99763 0.97926 0.95838 1.22867 0.93189 0.88350 0.90985 1.22998 0.89876 0.98743 0.90525 1.46012 1.19725 1.47454 1.25574 1.19967 1.08928 1.13000 0.99991 0.94270 1.27177 0.96769 1.04362 0.99377 1.71013 1.42011 1.37344 1.11251 0.83248 0.75661 0.74394 0.72948 1.22972 1.20594 1.17439 1.23143 0.99274 0.94474 0.86324 1.88352 1.48710 1.56727 1.34852 1.84017 1.15822 1.36091 1.71465 0.90190 0.87533 0.86427 0.79673 0.89735 0.89216 0.91801 0.75382 0.92970 0.88055 0.85996 0.89600 0.87620 0.87909 0.95298 0.90943 0.94771 0.89975 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.41 71.24 0.74 -0.26 16 2 C 0.02 0.53 7.31 24.97 0.18 0.72 16 3 C -0.23 -4.85 10.73 22.07 0.24 -4.61 16 4 C -0.09 -2.33 6.20 -19.74 -0.12 -2.45 16 5 C -0.09 -2.07 9.81 71.24 0.70 -1.37 16 6 C -0.13 -3.90 7.13 24.07 0.17 -3.73 16 7 C 0.60 19.45 7.79 86.44 0.67 20.12 16 8 O -0.55 -19.83 14.74 -4.31 -0.06 -19.90 16 9 N -0.71 -20.57 5.47 -467.11 -2.55 -23.12 16 10 C 0.11 2.82 5.24 86.38 0.45 3.28 16 11 C 0.06 1.33 3.61 31.10 0.11 1.45 16 12 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 13 C -0.13 -2.08 6.56 31.96 0.21 -1.87 16 14 C -0.13 -2.50 6.49 31.76 0.21 -2.30 16 15 C 0.09 2.87 1.56 -10.81 -0.02 2.85 16 16 C 0.10 4.18 8.24 83.47 0.69 4.87 16 17 N -0.66 -34.00 3.70 -740.00 -2.74 -36.73 16 18 C -0.29 -18.27 11.08 84.04 0.93 -17.34 16 19 H 0.04 2.69 8.06 -2.91 -0.02 2.67 16 20 C -0.09 -5.41 5.50 84.86 0.47 -4.95 16 21 N -0.97 -65.74 13.70 21.65 0.30 -65.44 16 22 Si 1.11 55.55 25.17 68.60 1.73 57.27 16 23 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 24 H -0.28 -13.20 6.49 99.48 0.65 -12.55 16 25 H -0.25 -10.79 6.18 99.48 0.61 -10.18 16 26 C 0.09 3.77 5.25 83.57 0.44 4.21 16 27 O -0.37 -12.52 10.69 -148.98 -1.59 -14.12 16 28 O -0.18 -5.06 10.40 -5.06 -0.05 -5.11 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.76 6.45 -2.39 -0.02 1.75 16 36 H 0.41 11.69 8.16 -92.70 -0.76 10.94 16 37 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.32 7.85 -2.38 -0.02 1.30 16 41 H 0.11 1.75 7.93 -2.39 -0.02 1.73 16 42 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 2.54 7.99 -2.38 -0.02 2.52 16 45 H 0.24 16.64 8.73 -92.71 -0.81 15.83 16 46 H 0.08 2.98 7.59 -2.39 -0.02 2.96 16 47 H 0.05 2.10 4.80 -2.39 -0.01 2.09 16 Total: -1.00 -87.09 381.71 1.13 -85.96 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.04 Total: 22.56 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 6.07 Total: -1.37 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -4.99 Total: -125.30 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -1.71 Total: -39.12 kcal Atomic # 14 Polarization: 55.55 SS G_CDS: 1.73 Total: 57.27 kcal Total: -87.09 1.13 -85.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645000058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.089 kcal (2) G-P(sol) polarization free energy of solvation -87.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds