Wall clock time and date at job start Tue Mar 31 2020 19:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.35961 * 120.56877 * 2 1 4 4 C 1.40840 * 119.33474 * 180.27118 * 3 2 1 5 5 O 1.21863 * 119.75510 * 179.73390 * 4 3 2 6 6 O 1.34375 * 120.48983 * 359.76329 * 4 3 2 7 7 C 1.33729 * 121.20540 * 359.97428 * 6 4 3 8 8 C 1.50707 * 119.68631 * 180.02562 * 7 6 4 9 9 C 1.37591 * 120.62098 * 0.02562 * 7 6 4 10 10 C 1.47514 * 120.25472 * 180.02562 * 9 7 6 11 11 O 1.21601 * 120.00001 * 90.00258 * 10 9 7 12 12 N 1.34772 * 120.00139 * 269.99718 * 10 9 7 13 13 C 1.46507 * 120.00207 * 180.02562 * 12 10 9 14 14 H 1.09004 * 110.01469 * 33.61313 * 13 12 10 15 15 C 1.54265 * 110.03211 * 272.17084 * 13 12 10 16 16 C 1.54890 * 104.19358 * 264.32248 * 15 13 12 17 17 C 1.54894 * 102.74813 * 322.05537 * 16 15 13 18 18 C 1.53870 * 110.03466 * 154.99775 * 13 12 10 19 19 H 1.09000 * 110.03284 * 359.95793 * 18 13 12 20 20 C 1.52997 * 110.03686 * 238.57216 * 18 13 12 21 21 N 1.46505 * 109.47212 * 175.00000 * 20 18 13 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 18 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00265 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46951 * 89.99797 * 26 24 22 28 28 H 1.48500 * 109.47313 * 210.00112 * 26 24 22 29 29 H 1.48501 * 109.46991 * 330.00153 * 26 24 22 30 30 H 1.09000 * 109.47060 * 270.23599 * 1 2 3 31 31 H 1.09004 * 109.46791 * 30.23512 * 1 2 3 32 32 H 1.08999 * 109.47204 * 150.23445 * 1 2 3 33 33 H 1.07998 * 120.32890 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47053 * 269.97421 * 8 7 6 35 35 H 1.08991 * 109.47068 * 29.98050 * 8 7 6 36 36 H 1.09002 * 109.46639 * 149.97826 * 8 7 6 37 37 H 0.97001 * 120.00331 * 0.02562 * 12 10 9 38 38 H 1.09000 * 110.48786 * 23.00041 * 15 13 12 39 39 H 1.09005 * 110.48342 * 145.64470 * 15 13 12 40 40 H 1.08998 * 110.75426 * 80.37434 * 16 15 13 41 41 H 1.09001 * 110.75430 * 203.55756 * 16 15 13 42 42 H 1.08994 * 110.48714 * 279.26294 * 17 16 15 43 43 H 1.08998 * 110.48108 * 156.61627 * 17 16 15 44 44 H 1.09002 * 109.47153 * 54.99992 * 20 18 13 45 45 H 1.09001 * 109.46832 * 295.00183 * 20 18 13 46 46 H 0.96996 * 119.99606 * 0.02562 * 21 20 18 47 47 H 0.97001 * 120.00803 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1986 1.1706 0.0000 4 6 3.6066 1.1403 -0.0058 5 8 4.2340 2.1850 -0.0108 6 8 4.2633 -0.0320 -0.0065 7 6 3.6041 -1.1955 -0.0013 8 6 4.3752 -2.4903 -0.0017 9 6 2.2284 -1.2215 0.0045 10 6 1.5094 -2.5095 0.0109 11 8 1.2174 -3.0376 1.0666 12 7 1.1760 -3.1009 -1.1533 13 6 0.4614 -4.3799 -1.1471 14 1 -0.2121 -4.4267 -0.2913 15 6 1.4682 -5.5475 -1.0930 16 6 1.6470 -5.9636 -2.5743 17 6 0.2167 -5.8081 -3.1480 18 6 -0.3343 -4.5456 -2.4536 19 1 -0.1895 -3.6741 -3.0920 20 6 -1.8215 -4.7254 -2.1424 21 7 -2.5814 -4.7623 -3.3944 22 6 -3.9417 -4.9174 -3.3653 23 1 -4.4543 -5.0120 -2.4194 24 6 -4.6616 -4.9528 -4.5515 25 7 -4.0369 -4.8379 -5.7042 26 14 -6.5173 -5.1636 -4.5119 27 1 -7.1658 -3.8293 -4.4478 28 1 -6.9614 -5.8714 -5.7395 29 1 -6.8999 -5.9578 -3.3168 30 1 -0.3633 0.0042 1.0277 31 1 -0.3633 0.8879 -0.5175 32 1 -0.3633 -0.8921 -0.5102 33 1 1.6733 2.1143 -0.0004 34 1 4.5564 -2.8049 -1.0294 35 1 5.3279 -2.3459 0.5075 36 1 3.7987 -3.2566 0.5166 37 1 1.4092 -2.6799 -1.9955 38 1 2.4172 -5.2138 -0.6733 39 1 1.0621 -6.3747 -0.5107 40 1 2.3418 -5.2948 -3.0822 41 1 1.9852 -6.9972 -2.6470 42 1 -0.3913 -6.6774 -2.8976 43 1 0.2525 -5.6646 -4.2279 44 1 -2.1682 -3.8920 -1.5313 45 1 -1.9688 -5.6595 -1.6002 46 1 -2.1209 -4.6776 -4.2438 47 1 -4.5399 -4.8631 -6.5333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699026318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:55 Heat of formation + Delta-G solvation = -83.395537 kcal Electronic energy + Delta-G solvation = -29117.199176 eV Core-core repulsion = 25072.555051 eV Total energy + Delta-G solvation = -4044.644125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.46657 -40.30415 -38.42235 -37.99708 -36.23537 -34.60376 -33.64073 -33.07608 -31.44673 -29.21161 -28.86099 -28.61654 -27.41433 -24.94874 -24.34953 -22.40152 -22.36307 -21.69663 -20.19036 -20.12937 -18.70317 -18.36977 -17.35123 -17.14342 -16.87487 -16.54964 -15.76886 -15.30718 -14.80633 -14.61311 -14.51617 -14.33404 -14.14294 -14.02535 -13.84111 -13.69789 -13.57198 -13.24154 -13.16393 -12.86733 -12.79891 -12.74370 -12.16013 -12.13859 -11.69667 -11.47835 -11.05279 -10.91863 -10.89447 -10.80927 -10.71844 -10.64931 -10.51035 -10.37985 -10.19192 -10.02206 -9.76381 -9.20014 -8.91811 -8.77597 -6.97281 -5.81427 -3.10092 0.00459 0.96314 1.80981 2.23880 2.74955 2.95940 3.40384 3.46064 3.47342 3.67186 3.89704 4.21739 4.41031 4.49143 4.61595 4.65687 4.69450 4.73568 4.81418 4.95280 5.04915 5.19301 5.21812 5.31645 5.35088 5.40747 5.48050 5.51353 5.58045 5.70313 5.72180 5.73626 5.77320 5.78918 5.93681 6.01669 6.13904 6.18207 6.37507 6.44915 6.52551 6.68581 6.68910 6.81017 7.11421 7.24366 7.65966 7.90863 8.37491 9.49072 10.05890 10.40718 11.41360 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.002752 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.692804 B =10170.232000 C =11320.346483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 C -0.278 4.278 4 C 0.499 3.501 5 O -0.474 6.474 6 O -0.257 6.257 7 C 0.188 3.812 8 C -0.122 4.122 9 C -0.259 4.259 10 C 0.579 3.421 11 O -0.524 6.524 12 N -0.707 5.707 13 C 0.143 3.857 14 H 0.096 0.904 15 C -0.130 4.130 16 C -0.126 4.126 17 C -0.112 4.112 18 C -0.103 4.103 19 H 0.078 0.922 20 C 0.162 3.838 21 N -0.731 5.731 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.165 0.835 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.402 0.598 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.017 0.983 45 H 0.022 0.978 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.589 4.330 10.183 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.059 3.941 3 C -0.297 4.297 4 C 0.352 3.648 5 O -0.364 6.364 6 O -0.165 6.165 7 C 0.138 3.862 8 C -0.178 4.178 9 C -0.263 4.263 10 C 0.363 3.637 11 O -0.400 6.400 12 N -0.358 5.358 13 C 0.039 3.961 14 H 0.114 0.886 15 C -0.168 4.168 16 C -0.163 4.163 17 C -0.150 4.150 18 C -0.122 4.122 19 H 0.096 0.904 20 C 0.034 3.966 21 N -0.375 5.375 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.582 5.582 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.182 0.818 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.237 0.763 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.035 0.965 45 H 0.040 0.960 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.695 4.434 11.000 21.301 hybrid contribution -1.039 0.337 -0.769 1.336 sum 16.655 4.770 10.231 20.120 Atomic orbital electron populations 1.21103 0.88693 1.04835 1.04366 1.20321 0.97680 0.90508 0.85576 1.22252 0.92510 1.00398 1.14577 1.19295 0.88439 0.80683 0.76410 1.91019 1.70863 1.25712 1.48762 1.83403 1.44658 1.14628 1.73845 1.22771 0.90308 0.85600 0.87546 1.21179 1.01614 0.89431 1.05528 1.19892 0.92697 0.95678 1.18061 1.17487 0.78771 0.82938 0.84469 1.90851 1.53724 1.64586 1.30841 1.46292 1.58103 1.23377 1.08057 1.21784 0.93036 0.81397 0.99880 0.88592 1.22744 0.98859 0.97890 0.97324 1.22548 0.97631 1.00967 0.95198 1.22372 0.94698 0.97826 1.00097 1.22234 0.96393 0.99127 0.94481 0.90361 1.20729 0.87638 0.97846 0.90406 1.42316 1.04304 1.88348 1.02508 1.19218 0.83383 1.41862 0.92616 0.91232 1.24723 0.97970 1.02908 0.95294 1.69649 1.34529 1.57429 0.96616 0.86203 0.85592 0.77632 0.76850 1.21723 1.21759 1.20747 0.88819 0.89482 0.89906 0.81794 0.87624 0.88401 0.87759 0.76322 0.91745 0.90547 0.91957 0.91653 0.90705 0.91200 0.96498 0.96007 0.78259 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.67 36.01 0.35 -0.78 16 2 C 0.06 0.57 5.93 -104.05 -0.62 -0.05 16 3 C -0.28 -2.70 9.65 -39.42 -0.38 -3.08 16 4 C 0.50 5.94 7.93 31.72 0.25 6.19 16 5 O -0.47 -7.13 17.93 -19.61 -0.35 -7.48 16 6 O -0.26 -2.68 9.81 -17.62 -0.17 -2.85 16 7 C 0.19 1.60 7.03 -34.54 -0.24 1.36 16 8 C -0.12 -0.67 9.80 36.01 0.35 -0.31 16 9 C -0.26 -2.47 5.63 -104.97 -0.59 -3.06 16 10 C 0.58 6.24 4.23 -12.48 -0.05 6.18 16 11 O -0.52 -7.46 16.73 5.28 0.09 -7.37 16 12 N -0.71 -6.82 5.03 -53.76 -0.27 -7.09 16 13 C 0.14 1.64 2.90 -66.81 -0.19 1.45 16 14 H 0.10 1.29 7.09 -51.93 -0.37 0.92 16 15 C -0.13 -1.29 6.54 -25.07 -0.16 -1.45 16 16 C -0.13 -1.24 6.91 -24.74 -0.17 -1.41 16 17 C -0.11 -1.47 6.08 -25.07 -0.15 -1.62 16 18 C -0.10 -1.41 2.73 -89.50 -0.24 -1.66 16 19 H 0.08 1.08 7.62 -51.93 -0.40 0.68 16 20 C 0.16 3.00 5.31 -4.04 -0.02 2.98 16 21 N -0.73 -17.46 5.45 -59.91 -0.33 -17.78 16 22 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 23 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 26 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.08 0.79 7.18 -51.93 -0.37 0.42 16 33 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.65 6.99 -51.93 -0.36 0.28 16 37 H 0.40 3.20 8.31 -40.82 -0.34 2.86 16 38 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.11 7.76 -51.93 -0.40 0.71 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.02 0.42 8.00 -51.93 -0.42 0.00 16 46 H 0.38 9.58 7.55 -40.82 -0.31 9.27 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -33.52 390.67 -8.72 -42.24 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.15 Total: 6.59 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.12 Total: -2.39 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.13 Total: -51.57 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.44 Total: -17.70 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.52 -8.72 -42.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699026318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.156 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds