Wall clock time and date at job start Tue Mar 31 2020 18:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 116.99805 * 2 1 4 4 O 1.20822 * 120.00229 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99964 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47446 * 205.00004 * 5 3 2 7 7 N 1.46504 * 109.46736 * 324.99586 * 5 3 2 8 8 C 1.34770 * 120.00232 * 301.91413 * 7 5 3 9 9 O 1.21285 * 120.00199 * 359.97438 * 8 7 5 10 10 C 1.50706 * 120.00117 * 179.97438 * 8 7 5 11 11 H 1.08995 * 109.47471 * 320.00040 * 10 8 7 12 12 N 1.46897 * 109.46883 * 199.99517 * 10 8 7 13 13 C 1.53006 * 109.47045 * 79.99937 * 10 8 7 14 14 C 1.52994 * 109.46936 * 184.99978 * 13 10 8 15 15 C 1.50707 * 109.46911 * 179.97438 * 14 13 10 16 16 H 1.07996 * 120.00193 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99876 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00048 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99888 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47275 * 59.99750 * 19 17 15 21 21 H 1.48498 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46911 * 299.99978 * 19 17 15 23 23 C 1.50694 * 109.47177 * 84.99415 * 5 3 2 24 24 C 1.38233 * 120.00127 * 34.01456 * 23 5 3 25 25 C 1.38235 * 120.00189 * 179.76190 * 24 23 5 26 26 C 1.38239 * 119.99899 * 0.51345 * 25 24 23 27 27 C 1.38230 * 119.99779 * 359.74167 * 26 25 24 28 28 C 1.38235 * 120.00309 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46900 * 300.00238 * 1 2 3 30 30 H 1.08993 * 109.47093 * 60.00101 * 1 2 3 31 31 H 1.09000 * 109.47304 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47285 * 179.97438 * 6 5 3 33 33 H 1.09002 * 109.47006 * 299.99707 * 6 5 3 34 34 H 1.09000 * 109.46879 * 59.99514 * 6 5 3 35 35 H 0.97002 * 120.00150 * 121.91415 * 7 5 3 36 36 H 1.00906 * 110.99559 * 176.04506 * 12 10 8 37 37 H 1.00898 * 111.00758 * 299.99966 * 12 10 8 38 38 H 1.09001 * 109.47061 * 304.99973 * 13 10 8 39 39 H 1.08997 * 109.47177 * 64.99975 * 13 10 8 40 40 H 1.09001 * 109.47699 * 299.99612 * 14 13 10 41 41 H 1.08997 * 109.47190 * 60.00005 * 14 13 10 42 42 H 0.97001 * 120.00215 * 179.97438 * 18 17 15 43 43 H 1.08005 * 120.00038 * 0.02562 * 24 23 5 44 44 H 1.08005 * 119.99949 * 180.23191 * 25 24 23 45 45 H 1.07998 * 119.99803 * 179.72224 * 26 25 24 46 46 H 1.08004 * 120.00106 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00185 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0075 2.6070 0.6091 7 7 4.1135 0.1704 0.7913 8 6 3.7637 0.0311 2.0853 9 8 2.9962 0.8202 2.5945 10 6 4.3261 -1.1054 2.8998 11 1 4.3576 -2.0085 2.2903 12 7 3.4729 -1.3360 4.0731 13 6 5.7416 -0.7513 3.3602 14 6 6.3591 -1.9519 4.0799 15 6 7.7535 -1.6033 4.5329 16 1 8.1589 -0.6236 4.3276 17 6 8.5121 -2.5355 5.2085 18 7 8.0187 -3.7287 5.4581 19 14 10.2403 -2.1031 5.7706 20 1 10.1839 -0.9456 6.6990 21 1 10.8402 -3.2689 6.4679 22 1 11.0710 -1.7514 4.5910 23 6 4.0739 1.1777 -1.4161 24 6 3.3389 1.7216 -2.4528 25 6 3.8069 1.6367 -3.7508 26 6 5.0048 0.9986 -4.0133 27 6 5.7372 0.4501 -2.9772 28 6 5.2716 0.5392 -1.6787 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 5.0960 2.6638 0.6091 33 1 3.6004 3.4287 0.0200 34 1 3.6403 2.6772 1.6330 35 1 4.7276 -0.4606 0.3843 36 1 3.7922 -2.1345 4.6010 37 1 3.4274 -0.5128 4.6547 38 1 6.3515 -0.4936 2.4944 39 1 5.7001 0.0987 4.0413 40 1 5.7492 -2.2096 4.9458 41 1 6.4005 -2.8019 3.3988 42 1 8.5525 -4.3847 5.9331 43 1 2.4010 2.2166 -2.2483 44 1 3.2344 2.0650 -4.5603 45 1 5.3682 0.9284 -5.0279 46 1 6.6729 -0.0487 -3.1823 47 1 5.8436 0.1103 -0.8693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118122809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:35 Heat of formation + Delta-G solvation = -97.837386 kcal Electronic energy + Delta-G solvation = -29633.388389 eV Core-core repulsion = 25588.118018 eV Total energy + Delta-G solvation = -4045.270371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.41345 -39.55787 -39.23043 -36.69516 -35.94479 -35.24188 -32.88596 -32.00807 -31.15367 -29.91426 -29.62787 -28.06873 -26.58807 -24.92669 -23.95109 -23.09345 -22.33286 -20.96233 -20.15397 -19.76215 -18.16413 -17.91394 -16.95315 -16.86384 -16.25228 -16.13755 -15.84471 -15.04076 -14.97327 -14.71726 -14.47974 -14.42659 -14.05794 -13.85563 -13.80665 -13.49647 -13.19409 -13.07878 -12.90758 -12.58142 -12.33522 -12.26114 -12.17303 -12.08324 -11.70639 -11.52233 -11.39933 -11.10561 -10.93115 -10.82136 -10.72863 -10.61763 -10.01901 -9.94757 -9.39757 -9.32819 -9.26551 -9.23372 -9.03244 -8.45784 -8.21535 -6.10356 -4.13724 0.91732 1.05768 2.05836 2.49584 2.87240 3.03187 3.27046 3.32248 3.34445 3.44359 4.10682 4.37574 4.47538 4.65527 4.69021 4.78908 4.80967 5.00648 5.02101 5.12873 5.14155 5.16056 5.24391 5.25852 5.43583 5.52315 5.54827 5.57403 5.63242 5.69368 5.71279 6.02193 6.09168 6.13217 6.18145 6.24500 6.30217 6.33691 6.47910 6.61478 6.83794 7.33247 7.48553 7.55691 7.61594 7.66162 7.86208 7.88391 8.28133 8.32239 8.92019 9.51310 11.00455 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.003178 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.934563 B = 8807.293502 C =10232.535632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.345 6.345 3 C 0.477 3.523 4 O -0.502 6.502 5 C 0.237 3.763 6 C -0.150 4.150 7 N -0.723 5.723 8 C 0.532 3.468 9 O -0.528 6.528 10 C 0.078 3.922 11 H 0.099 0.901 12 N -0.829 5.829 13 C -0.138 4.138 14 C 0.025 3.975 15 C -0.525 4.525 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.089 4.089 24 C -0.109 4.109 25 C -0.113 4.113 26 C -0.114 4.114 27 C -0.111 4.111 28 C -0.103 4.103 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.408 0.592 36 H 0.355 0.645 37 H 0.346 0.654 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.130 0.870 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.583 7.749 -18.802 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.260 6.260 3 C 0.318 3.682 4 O -0.389 6.389 5 C 0.149 3.851 6 C -0.208 4.208 7 N -0.380 5.380 8 C 0.320 3.680 9 O -0.403 6.403 10 C -0.037 4.037 11 H 0.117 0.883 12 N -0.362 5.362 13 C -0.178 4.178 14 C -0.012 4.012 15 C -0.563 4.563 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.089 4.089 24 C -0.127 4.127 25 C -0.131 4.131 26 C -0.132 4.132 27 C -0.129 4.129 28 C -0.122 4.122 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.246 0.754 36 H 0.171 0.829 37 H 0.159 0.841 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.148 0.852 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.950 8.304 -18.838 23.318 hybrid contribution 1.956 0.058 0.679 2.071 sum -8.994 8.362 -18.159 21.922 Atomic orbital electron populations 1.23260 0.76445 1.03707 1.02301 1.86533 1.23240 1.32878 1.83381 1.23610 0.91357 0.81737 0.71493 1.90636 1.66447 1.36393 1.45382 1.18848 0.85676 0.90721 0.89876 1.22150 1.02270 0.92897 1.03459 1.46224 1.50215 1.30266 1.11325 1.21019 0.79714 0.86348 0.80963 1.90643 1.34730 1.44207 1.70713 1.21448 0.92810 0.95882 0.93547 0.88334 1.58723 1.54756 1.10853 1.11843 1.22402 0.92633 1.01911 1.00818 1.19096 0.95404 0.91616 0.95117 1.21136 0.99334 0.99210 1.36643 0.92753 1.25004 0.98366 0.95002 0.95880 1.69934 1.37371 1.04802 1.41049 0.86649 0.84491 0.77885 0.78941 1.20221 1.21223 1.20211 1.19406 0.96467 1.00932 0.92143 1.21051 0.99853 0.99279 0.92566 1.21117 0.96488 0.99273 0.96228 1.21259 0.94912 0.97616 0.99418 1.21188 1.00061 0.99326 0.92290 1.20965 0.95143 0.98456 0.97607 0.91725 0.92212 0.88091 0.90508 0.90429 0.89328 0.75427 0.82913 0.84125 0.92489 0.92563 0.96375 0.96277 0.92804 0.85761 0.85608 0.85667 0.85197 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.34 -4.98 10.11 -39.24 -0.40 -5.38 16 3 C 0.48 7.17 4.10 36.01 0.15 7.32 16 4 O -0.50 -8.29 15.25 -18.75 -0.29 -8.58 16 5 C 0.24 3.12 0.86 -134.12 -0.12 3.00 16 6 C -0.15 -1.98 7.94 37.16 0.30 -1.69 16 7 N -0.72 -9.57 4.69 -49.77 -0.23 -9.81 16 8 C 0.53 8.62 6.35 -10.99 -0.07 8.55 16 9 O -0.53 -10.01 13.50 5.55 0.07 -9.93 16 10 C 0.08 1.29 3.21 -68.86 -0.22 1.07 16 11 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 12 N -0.83 -13.99 8.94 -5.65 -0.05 -14.04 16 13 C -0.14 -2.59 4.78 -26.73 -0.13 -2.72 16 14 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 15 C -0.53 -14.07 9.11 -34.44 -0.31 -14.39 16 16 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 19 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.09 -0.98 4.81 -104.63 -0.50 -1.49 16 24 C -0.11 -1.14 9.15 -39.58 -0.36 -1.50 16 25 C -0.11 -0.95 10.05 -39.58 -0.40 -1.35 16 26 C -0.11 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.11 -0.91 10.05 -39.59 -0.40 -1.31 16 28 C -0.10 -0.99 9.03 -39.58 -0.36 -1.35 16 29 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.96 7.87 -51.93 -0.41 0.55 16 34 H 0.09 1.39 6.31 -51.93 -0.33 1.06 16 35 H 0.41 4.52 6.37 -40.82 -0.26 4.26 16 36 H 0.36 5.99 7.55 -39.29 -0.30 5.70 16 37 H 0.35 5.92 8.58 -39.29 -0.34 5.58 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.12 1.36 6.74 -52.48 -0.35 1.00 16 44 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 45 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 47 H 0.13 1.12 6.42 -52.49 -0.34 0.79 16 LS Contribution 388.90 15.07 5.86 5.86 Total: -1.00 -32.87 388.90 -8.17 -41.04 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -6.87 Total: 13.46 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.98 Total: -3.65 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.45 Total: -48.74 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.61 Total: -23.90 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.87 -8.17 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118122809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.798 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds