Wall clock time and date at job start Tue Mar 31 2020 18:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 116.99805 * 2 1 4 4 O 1.20822 * 120.00229 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99964 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47446 * 205.00004 * 5 3 2 7 7 N 1.46504 * 109.46736 * 324.99586 * 5 3 2 8 8 C 1.34770 * 120.00232 * 301.91413 * 7 5 3 9 9 O 1.21285 * 120.00199 * 359.97438 * 8 7 5 10 10 C 1.50706 * 120.00117 * 179.97438 * 8 7 5 11 11 H 1.08995 * 109.47471 * 320.00040 * 10 8 7 12 12 N 1.46897 * 109.46883 * 199.99517 * 10 8 7 13 13 C 1.53006 * 109.47045 * 79.99937 * 10 8 7 14 14 C 1.52994 * 109.46936 * 184.99978 * 13 10 8 15 15 C 1.50707 * 109.46911 * 179.97438 * 14 13 10 16 16 H 1.07996 * 120.00193 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99876 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00048 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99888 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47275 * 59.99750 * 19 17 15 21 21 H 1.48498 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46911 * 299.99978 * 19 17 15 23 23 C 1.50694 * 109.47177 * 84.99415 * 5 3 2 24 24 C 1.38233 * 120.00127 * 34.01456 * 23 5 3 25 25 C 1.38235 * 120.00189 * 179.76190 * 24 23 5 26 26 C 1.38239 * 119.99899 * 0.51345 * 25 24 23 27 27 C 1.38230 * 119.99779 * 359.74167 * 26 25 24 28 28 C 1.38235 * 120.00309 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46900 * 300.00238 * 1 2 3 30 30 H 1.08993 * 109.47093 * 60.00101 * 1 2 3 31 31 H 1.09000 * 109.47304 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47285 * 179.97438 * 6 5 3 33 33 H 1.09002 * 109.47006 * 299.99707 * 6 5 3 34 34 H 1.09000 * 109.46879 * 59.99514 * 6 5 3 35 35 H 0.97002 * 120.00150 * 121.91415 * 7 5 3 36 36 H 1.00906 * 110.99559 * 176.04506 * 12 10 8 37 37 H 1.00898 * 111.00758 * 299.99966 * 12 10 8 38 38 H 1.09001 * 109.47061 * 304.99973 * 13 10 8 39 39 H 1.08997 * 109.47177 * 64.99975 * 13 10 8 40 40 H 1.09001 * 109.47699 * 299.99612 * 14 13 10 41 41 H 1.08997 * 109.47190 * 60.00005 * 14 13 10 42 42 H 0.97001 * 120.00215 * 179.97438 * 18 17 15 43 43 H 1.08005 * 120.00038 * 0.02562 * 24 23 5 44 44 H 1.08005 * 119.99949 * 180.23191 * 25 24 23 45 45 H 1.07998 * 119.99803 * 179.72224 * 26 25 24 46 46 H 1.08004 * 120.00106 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.00185 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0075 2.6070 0.6091 7 7 4.1135 0.1704 0.7913 8 6 3.7637 0.0311 2.0853 9 8 2.9962 0.8202 2.5945 10 6 4.3261 -1.1054 2.8998 11 1 4.3576 -2.0085 2.2903 12 7 3.4729 -1.3360 4.0731 13 6 5.7416 -0.7513 3.3602 14 6 6.3591 -1.9519 4.0799 15 6 7.7535 -1.6033 4.5329 16 1 8.1589 -0.6236 4.3276 17 6 8.5121 -2.5355 5.2085 18 7 8.0187 -3.7287 5.4581 19 14 10.2403 -2.1031 5.7706 20 1 10.1839 -0.9456 6.6990 21 1 10.8402 -3.2689 6.4679 22 1 11.0710 -1.7514 4.5910 23 6 4.0739 1.1777 -1.4161 24 6 3.3389 1.7216 -2.4528 25 6 3.8069 1.6367 -3.7508 26 6 5.0048 0.9986 -4.0133 27 6 5.7372 0.4501 -2.9772 28 6 5.2716 0.5392 -1.6787 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 5.0960 2.6638 0.6091 33 1 3.6004 3.4287 0.0200 34 1 3.6403 2.6772 1.6330 35 1 4.7276 -0.4606 0.3843 36 1 3.7922 -2.1345 4.6010 37 1 3.4274 -0.5128 4.6547 38 1 6.3515 -0.4936 2.4944 39 1 5.7001 0.0987 4.0413 40 1 5.7492 -2.2096 4.9458 41 1 6.4005 -2.8019 3.3988 42 1 8.5525 -4.3847 5.9331 43 1 2.4010 2.2166 -2.2483 44 1 3.2344 2.0650 -4.5603 45 1 5.3682 0.9284 -5.0279 46 1 6.6729 -0.0487 -3.1823 47 1 5.8436 0.1103 -0.8693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118122809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:34 Heat of formation + Delta-G solvation = -119.311037 kcal Electronic energy + Delta-G solvation = -29634.319556 eV Core-core repulsion = 25588.118018 eV Total energy + Delta-G solvation = -4046.201538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.49079 -40.75854 -40.10555 -37.79298 -37.27596 -36.56184 -34.82569 -33.00438 -31.85343 -31.66713 -30.50681 -29.03504 -28.16567 -26.18222 -25.36513 -24.00513 -23.15097 -22.44988 -21.37023 -20.94946 -19.30615 -19.06958 -18.39740 -18.03252 -17.71084 -17.15748 -16.76079 -16.56683 -16.13792 -15.90023 -15.72692 -15.64406 -15.24723 -14.95711 -14.73091 -14.64798 -14.56508 -14.26988 -14.03754 -13.80545 -13.56984 -13.41118 -13.29411 -13.24107 -13.04207 -12.89491 -12.63214 -12.53162 -12.36332 -12.07088 -11.88791 -11.77263 -11.71343 -11.65542 -11.28946 -10.77952 -10.53053 -10.47329 -9.92813 -9.82557 -9.63789 -8.18767 -6.28755 0.21271 0.38943 0.92872 1.38009 1.42499 1.43445 1.51352 1.66165 1.91526 2.42134 2.75241 3.15213 3.21444 3.50162 3.64135 3.74868 3.86390 3.97113 4.03456 4.14174 4.18236 4.22886 4.24195 4.25098 4.47726 4.50939 4.56042 4.57542 4.63517 4.68682 4.85167 4.88601 4.99769 5.03225 5.11179 5.12165 5.23603 5.44705 5.48243 5.49952 5.55251 5.68945 5.83665 5.97744 6.05258 6.23867 6.35564 6.48227 6.54051 6.86844 7.07268 7.40301 8.91727 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.003178 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.934563 B = 8807.293502 C =10232.535632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.473 3.527 4 O -0.526 6.526 5 C 0.238 3.762 6 C -0.146 4.146 7 N -0.707 5.707 8 C 0.535 3.465 9 O -0.558 6.558 10 C 0.085 3.915 11 H 0.112 0.888 12 N -0.830 5.830 13 C -0.121 4.121 14 C 0.030 3.970 15 C -0.544 4.544 16 H 0.056 0.944 17 C 0.006 3.994 18 N -0.927 5.927 19 Si 0.956 3.044 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.103 4.103 24 C -0.124 4.124 25 C -0.114 4.114 26 C -0.109 4.109 27 C -0.111 4.111 28 C -0.111 4.111 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.419 0.581 36 H 0.354 0.646 37 H 0.344 0.656 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.001 0.999 41 H 0.004 0.996 42 H 0.263 0.737 43 H 0.111 0.889 44 H 0.147 0.853 45 H 0.154 0.846 46 H 0.153 0.847 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 7.804 -20.928 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.315 3.685 4 O -0.414 6.414 5 C 0.149 3.851 6 C -0.204 4.204 7 N -0.365 5.365 8 C 0.322 3.678 9 O -0.435 6.435 10 C -0.030 4.030 11 H 0.130 0.870 12 N -0.361 5.361 13 C -0.161 4.161 14 C -0.007 4.007 15 C -0.582 4.582 16 H 0.074 0.926 17 C -0.192 4.192 18 N -0.567 5.567 19 Si 0.782 3.218 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.191 1.191 23 C -0.103 4.103 24 C -0.142 4.142 25 C -0.132 4.132 26 C -0.127 4.127 27 C -0.129 4.129 28 C -0.129 4.129 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.147 0.853 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.260 0.740 36 H 0.169 0.831 37 H 0.157 0.843 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.020 0.980 41 H 0.022 0.978 42 H 0.072 0.928 43 H 0.129 0.871 44 H 0.165 0.835 45 H 0.172 0.828 46 H 0.170 0.830 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.628 8.350 -20.999 24.564 hybrid contribution 1.493 0.026 1.270 1.960 sum -8.136 8.376 -19.729 22.926 Atomic orbital electron populations 1.23525 0.74933 1.05611 1.02288 1.86514 1.24909 1.32652 1.83119 1.24006 0.92151 0.81591 0.70734 1.90611 1.67126 1.37074 1.46607 1.18898 0.84688 0.90184 0.91291 1.22098 1.03090 0.93415 1.01783 1.46061 1.49601 1.30432 1.10364 1.20866 0.79461 0.85707 0.81753 1.90643 1.36184 1.45062 1.71584 1.21377 0.91321 0.96623 0.93674 0.87021 1.58734 1.54703 1.10711 1.11983 1.22150 0.94025 0.99302 1.00601 1.18962 0.94305 0.92882 0.94529 1.21598 1.00822 0.99273 1.36483 0.92564 1.25837 1.02387 0.94923 0.96086 1.70049 1.38895 1.05770 1.41945 0.85630 0.79848 0.77611 0.78746 1.19788 1.21027 1.19063 1.19283 0.97529 1.02781 0.90743 1.21065 0.99676 0.99959 0.93533 1.21396 0.97000 0.98938 0.95820 1.21636 0.94165 0.96162 1.00743 1.21514 1.00833 0.98878 0.91686 1.21108 0.94660 0.98446 0.98728 0.93039 0.90967 0.85272 0.89026 0.90059 0.92086 0.74032 0.83053 0.84342 0.91031 0.93582 0.98041 0.97755 0.92791 0.87080 0.83517 0.82819 0.82950 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.56 113.37 1.20 1.84 16 2 O -0.36 -10.25 10.11 -51.37 -0.52 -10.77 16 3 C 0.47 14.37 4.10 71.24 0.29 14.66 16 4 O -0.53 -17.86 15.25 21.98 0.34 -17.53 16 5 C 0.24 6.18 0.86 2.11 0.00 6.18 16 6 C -0.15 -3.88 7.94 71.98 0.57 -3.31 16 7 N -0.71 -18.19 4.69 -429.75 -2.02 -20.21 16 8 C 0.53 17.17 6.35 87.66 0.56 17.72 16 9 O -0.56 -21.42 13.50 -3.05 -0.04 -21.46 16 10 C 0.09 2.77 3.21 44.17 0.14 2.91 16 11 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 12 N -0.83 -28.10 8.94 -171.80 -1.54 -29.64 16 13 C -0.12 -4.48 4.78 30.59 0.15 -4.34 16 14 C 0.03 1.44 4.74 29.85 0.14 1.58 16 15 C -0.54 -29.02 9.11 25.60 0.23 -28.79 16 16 H 0.06 2.91 7.74 -2.91 -0.02 2.89 16 17 C 0.01 0.34 5.46 84.66 0.46 0.80 16 18 N -0.93 -53.47 13.29 21.45 0.28 -53.19 16 19 Si 0.96 42.52 29.54 68.60 2.03 44.55 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 C -0.10 -2.16 4.81 -19.87 -0.10 -2.26 16 24 C -0.12 -2.46 9.15 22.27 0.20 -2.26 16 25 C -0.11 -1.65 10.05 22.27 0.22 -1.42 16 26 C -0.11 -1.31 10.05 22.27 0.22 -1.09 16 27 C -0.11 -1.48 10.05 22.27 0.22 -1.26 16 28 C -0.11 -1.90 9.03 22.27 0.20 -1.70 16 29 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 30 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 31 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 2.05 7.87 -2.39 -0.02 2.03 16 34 H 0.06 1.97 6.31 -2.39 -0.02 1.95 16 35 H 0.42 8.68 6.37 -92.71 -0.59 8.09 16 36 H 0.35 12.10 7.55 -89.69 -0.68 11.42 16 37 H 0.34 11.93 8.58 -89.70 -0.77 11.16 16 38 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.00 0.07 6.87 -2.39 -0.02 0.05 16 41 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 42 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.11 2.45 6.74 -2.91 -0.02 2.43 16 44 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 45 H 0.15 0.97 8.06 -2.91 -0.02 0.94 16 46 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 47 H 0.14 2.06 6.42 -2.91 -0.02 2.04 16 Total: -1.00 -70.92 388.90 2.24 -68.68 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: -1.02 Total: 40.27 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 4.72 Total: -0.71 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -3.27 Total: -103.03 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.23 Total: -49.75 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -70.92 2.24 -68.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118122809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.628 kcal (2) G-P(sol) polarization free energy of solvation -70.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds