Wall clock time and date at job start Tue Mar 31 2020 18:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47217 * 2 1 4 4 C 1.53006 * 109.46736 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.46788 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00023 * 269.99935 * 5 4 3 7 7 C 1.50695 * 109.47268 * 270.00124 * 6 5 4 8 8 N 1.34779 * 120.00228 * 179.97438 * 7 6 5 9 9 O 1.21287 * 120.00049 * 359.97438 * 7 6 5 10 10 C 1.34775 * 120.00172 * 89.99959 * 5 4 3 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 5 4 12 12 C 1.50705 * 120.00246 * 179.97438 * 10 5 4 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 5 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47517 * 59.99414 * 22 20 18 24 24 H 1.48505 * 109.47332 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46989 * 299.99567 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.08995 * 109.47410 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46828 * 299.99971 * 1 2 3 30 30 H 1.09005 * 109.47229 * 59.99665 * 1 2 3 31 31 H 1.09003 * 109.46689 * 239.99493 * 2 1 3 32 32 H 1.09005 * 109.46794 * 120.00022 * 2 1 3 33 33 H 1.08997 * 109.47109 * 59.99799 * 3 2 1 34 34 H 1.08999 * 109.46852 * 299.99787 * 3 2 1 35 35 H 1.09002 * 109.47115 * 60.00148 * 4 3 2 36 36 H 1.08991 * 109.47058 * 299.99802 * 4 3 2 37 37 H 1.09003 * 109.47210 * 30.00112 * 6 5 4 38 38 H 1.09004 * 109.47392 * 150.00165 * 6 5 4 39 39 H 0.97001 * 120.00254 * 0.02562 * 8 7 6 40 40 H 0.97000 * 120.00345 * 179.97438 * 8 7 6 41 41 H 1.08998 * 109.46621 * 60.00483 * 12 10 5 42 42 H 1.08996 * 109.47266 * 300.00146 * 12 10 5 43 43 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 44 44 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 45 45 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 47 47 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8235 -0.0013 6 6 4.3021 3.5137 -1.2703 7 6 5.7251 3.2768 -1.7059 8 7 6.1776 3.8186 -2.8540 9 8 6.4634 2.5985 -1.0232 10 6 4.2836 3.4592 1.1656 11 8 4.0823 2.8877 2.2162 12 6 4.7865 4.8799 1.1650 13 6 4.9550 5.3537 2.5856 14 6 6.1620 5.1707 3.2355 15 6 6.3198 5.6042 4.5371 16 6 5.2645 6.2241 5.1937 17 8 5.4167 6.6518 6.4731 18 6 6.6491 6.5492 7.0103 19 1 7.4411 6.0669 6.4568 20 6 6.8996 7.0628 8.2737 21 7 5.9349 7.6507 8.9480 22 14 8.6071 6.9212 9.0178 23 1 9.5863 7.6188 8.1462 24 1 8.6129 7.5443 10.3658 25 1 8.9797 5.4883 9.1327 26 6 4.0518 6.4007 4.5406 27 6 3.9021 5.9701 3.2370 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9287 -0.8909 36 1 3.9337 0.9284 0.8891 37 1 3.6210 3.1294 -2.0296 38 1 4.1352 4.5831 -1.1402 39 1 5.5874 4.3613 -3.3999 40 1 7.0937 3.6663 -3.1342 41 1 4.0686 5.5191 0.6512 42 1 5.7466 4.9252 0.6510 43 1 6.9823 4.6890 2.7242 44 1 7.2627 5.4614 5.0439 45 1 6.1101 8.0096 9.8319 46 1 3.2280 6.8784 5.0500 47 1 2.9607 6.1111 2.7270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110215519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:58 Heat of formation + Delta-G solvation = -85.782349 kcal Electronic energy + Delta-G solvation = -28307.982951 eV Core-core repulsion = 24263.235326 eV Total energy + Delta-G solvation = -4044.747625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.53997 -39.24646 -38.68296 -36.69870 -36.01030 -34.57274 -34.02870 -32.41595 -31.45184 -30.07236 -29.72586 -27.76516 -26.53601 -25.12307 -23.59317 -21.89400 -21.62085 -21.41361 -20.58143 -19.15802 -17.91325 -17.73309 -17.35453 -17.08150 -16.82665 -16.10826 -15.43094 -15.25460 -15.05994 -14.60317 -14.51297 -14.21881 -13.97665 -13.79567 -13.64809 -13.37578 -13.33514 -13.11132 -12.83143 -12.61358 -12.47719 -12.40098 -11.88795 -11.61747 -11.46201 -11.39928 -11.30593 -11.18848 -10.79745 -10.74329 -10.67159 -10.56926 -10.51927 -10.37566 -10.07728 -9.62166 -9.25137 -8.81597 -8.74958 -8.06294 -7.08333 -6.38015 -3.96335 2.24884 2.30600 2.34245 2.63305 2.86620 3.18397 3.19430 3.21962 3.31528 4.03241 4.41618 4.48037 4.57756 4.68040 4.70095 4.79384 4.87069 4.87886 5.09908 5.17262 5.29437 5.29949 5.36227 5.38521 5.45607 5.54351 5.60785 5.68336 5.77688 5.83464 5.90608 5.92326 6.03778 6.09603 6.29708 6.34061 6.40622 6.50391 6.78193 6.88198 6.99791 7.12861 7.27831 7.32883 7.46433 7.53048 7.88289 7.92321 8.07601 8.31600 9.07766 9.78923 10.80171 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013782 B = 0.002473 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.158960 B =11320.693277 C =12436.911279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.134 4.134 4 C 0.119 3.881 5 N -0.605 5.605 6 C 0.091 3.909 7 C 0.490 3.510 8 N -0.857 5.857 9 O -0.524 6.524 10 C 0.518 3.482 11 O -0.509 6.509 12 C -0.080 4.080 13 C -0.170 4.170 14 C -0.055 4.055 15 C -0.232 4.232 16 C 0.157 3.843 17 O -0.178 6.178 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.192 4.192 27 C -0.059 4.059 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.401 0.599 40 H 0.402 0.598 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.270 0.730 46 H 0.116 0.884 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.151 -8.232 -27.724 29.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.173 4.173 4 C -0.003 4.003 5 N -0.340 5.340 6 C -0.037 4.037 7 C 0.273 3.727 8 N -0.422 5.422 9 O -0.398 6.398 10 C 0.307 3.693 11 O -0.382 6.382 12 C -0.120 4.120 13 C -0.171 4.171 14 C -0.073 4.073 15 C -0.251 4.251 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.211 4.211 27 C -0.078 4.078 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.229 0.771 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.121 0.879 44 H 0.144 0.856 45 H 0.080 0.920 46 H 0.134 0.866 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.118 -8.809 -26.101 28.219 hybrid contribution 1.091 0.092 -0.294 1.134 sum -5.027 -8.717 -26.395 28.248 Atomic orbital electron populations 1.21755 0.95711 1.01541 1.01859 1.21447 0.96011 0.96417 1.02153 1.21992 0.95513 0.97247 1.02561 1.21443 0.93404 0.82141 1.03332 1.47639 1.67172 1.14470 1.04687 1.21422 0.93394 1.00438 0.88492 1.21462 0.90997 0.79349 0.80893 1.43895 1.17491 1.55723 1.25124 1.90824 1.57978 1.37830 1.53208 1.20994 0.76577 0.88999 0.82726 1.90741 1.49459 1.67554 1.30423 1.20457 1.01951 0.92217 0.97328 1.18611 0.95567 1.08283 0.94634 1.20527 0.95929 0.96743 0.94111 1.21103 1.00568 1.07443 0.95972 1.19386 0.93331 0.91665 0.85292 1.83973 1.32365 1.71528 1.20316 1.21284 0.85704 1.39068 1.00631 0.89157 1.25275 0.99626 0.95967 0.95654 1.70031 1.32103 1.35321 1.12512 0.85792 0.80438 0.78917 0.78348 1.19540 1.20310 1.19510 1.20135 0.96866 1.09021 0.95079 1.20372 0.96669 0.96986 0.93747 0.92801 0.92563 0.92912 0.92130 0.91639 0.91160 0.92136 0.91155 0.89609 0.87293 0.86964 0.77060 0.76708 0.89171 0.89354 0.87857 0.85609 0.92048 0.86555 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.72 16 2 C -0.12 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.13 -1.19 5.54 -26.73 -0.15 -1.33 16 4 C 0.12 1.25 5.41 -4.04 -0.02 1.23 16 5 N -0.61 -6.68 1.96 -175.06 -0.34 -7.03 16 6 C 0.09 0.58 5.69 -5.20 -0.03 0.55 16 7 C 0.49 4.09 8.06 -10.99 -0.09 4.00 16 8 N -0.86 -3.44 8.87 31.22 0.28 -3.16 16 9 O -0.52 -7.37 17.27 5.55 0.10 -7.27 16 10 C 0.52 7.84 7.67 -10.98 -0.08 7.76 16 11 O -0.51 -10.16 15.61 5.55 0.09 -10.07 16 12 C -0.08 -1.09 4.38 -29.04 -0.13 -1.22 16 13 C -0.17 -3.13 4.38 -104.58 -0.46 -3.59 16 14 C -0.05 -1.12 9.69 -39.61 -0.38 -1.51 16 15 C -0.23 -5.45 9.17 -39.39 -0.36 -5.82 16 16 C 0.16 4.03 6.65 -39.11 -0.26 3.77 16 17 O -0.18 -5.32 9.76 0.05 0.00 -5.32 16 18 C -0.39 -11.37 9.49 30.89 0.29 -11.07 16 19 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -26.07 13.67 55.48 0.76 -25.31 16 22 Si 0.94 21.26 29.55 -169.99 -5.02 16.24 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 C -0.19 -4.31 9.99 -39.39 -0.39 -4.70 16 27 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 36 H 0.09 1.14 7.42 -51.93 -0.39 0.76 16 37 H 0.11 0.34 8.07 -51.93 -0.42 -0.08 16 38 H 0.11 0.47 6.44 -51.93 -0.33 0.13 16 39 H 0.40 0.17 8.83 -40.82 -0.36 -0.19 16 40 H 0.40 1.57 8.93 -40.82 -0.36 1.21 16 41 H 0.09 0.91 7.34 -51.93 -0.38 0.53 16 42 H 0.09 1.12 7.94 -51.93 -0.41 0.70 16 43 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 44 H 0.13 2.96 5.64 -52.49 -0.30 2.66 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 47 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 398.53 15.07 6.01 6.01 Total: -1.00 -39.06 398.53 -7.48 -46.54 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.01 Total: 3.65 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -2.33 Total: -14.28 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.69 Total: -35.50 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.18 Total: -22.66 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -39.06 -7.48 -46.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110215519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.242 kcal (2) G-P(sol) polarization free energy of solvation -39.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds