Wall clock time and date at job start Tue Mar 31 2020 18:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47259 * 2 1 4 4 C 1.53002 * 109.47498 * 179.97438 * 3 2 1 5 5 O 1.42906 * 109.47002 * 180.02562 * 4 3 2 6 6 C 1.35895 * 116.99727 * 180.02562 * 5 4 3 7 7 C 1.38817 * 120.02091 * 359.72567 * 6 5 4 8 8 C 1.38181 * 120.09664 * 179.70043 * 7 6 5 9 9 C 1.38148 * 120.13182 * 0.59445 * 8 7 6 10 10 C 1.38946 * 120.03149 * 359.68571 * 9 8 7 11 11 N 1.39721 * 120.04723 * 180.02562 * 10 9 8 12 12 C 1.34776 * 120.00178 * 144.57812 * 11 10 9 13 13 O 1.21380 * 120.00069 * 5.10896 * 12 11 10 14 14 C 1.49349 * 120.00480 * 185.11342 * 12 11 10 15 15 O 1.21365 * 119.99425 * 359.86385 * 14 12 11 16 16 N 1.34769 * 120.00499 * 179.86215 * 14 12 11 17 17 C 1.46502 * 119.99948 * 354.35281 * 16 14 12 18 18 C 1.46501 * 120.00359 * 174.34248 * 16 14 12 19 19 C 1.50703 * 109.46814 * 90.00347 * 18 16 14 20 20 H 1.07999 * 120.00223 * 0.02562 * 19 18 16 21 21 C 1.37873 * 119.99886 * 180.02562 * 19 18 16 22 22 N 1.31520 * 120.00164 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99977 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47221 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47496 * 119.99931 * 23 21 19 26 26 H 1.48502 * 109.47115 * 239.99854 * 23 21 19 27 27 C 1.38573 * 120.01809 * 180.02562 * 6 5 4 28 28 H 1.09007 * 109.46815 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47644 * 299.99469 * 1 2 3 30 30 H 1.08997 * 109.47291 * 60.00319 * 1 2 3 31 31 H 1.09009 * 109.47506 * 239.99862 * 2 1 3 32 32 H 1.09002 * 109.47709 * 120.00270 * 2 1 3 33 33 H 1.09009 * 109.46974 * 59.99536 * 3 2 1 34 34 H 1.09002 * 109.47468 * 300.00509 * 3 2 1 35 35 H 1.08998 * 109.47032 * 60.00209 * 4 3 2 36 36 H 1.08997 * 109.47212 * 299.99780 * 4 3 2 37 37 H 1.07999 * 119.95015 * 359.97438 * 7 6 5 38 38 H 1.08005 * 119.93154 * 180.30376 * 8 7 6 39 39 H 1.08002 * 119.98457 * 179.69985 * 9 8 7 40 40 H 0.96998 * 120.00298 * 324.57643 * 11 10 9 41 41 H 1.08997 * 109.47300 * 84.05717 * 17 16 14 42 42 H 1.09006 * 109.46841 * 204.05663 * 17 16 14 43 43 H 1.09006 * 109.46569 * 324.05185 * 17 16 14 44 44 H 1.08997 * 109.47766 * 210.00500 * 18 16 14 45 45 H 1.09005 * 109.47097 * 330.01030 * 18 16 14 46 46 H 0.97003 * 119.99666 * 180.02562 * 22 21 19 47 47 H 1.07999 * 120.06303 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0462 2.7899 0.0012 6 6 5.3935 2.9679 0.0013 7 6 6.2395 1.8674 0.0066 8 6 7.6096 2.0466 0.0004 9 6 8.1423 3.3213 0.0014 10 6 7.3005 4.4267 0.0020 11 7 7.8389 5.7160 0.0025 12 6 7.2208 6.7047 -0.6735 13 8 6.1493 6.4986 -1.2052 14 6 7.8542 8.0538 -0.7685 15 8 8.9245 8.2606 -0.2349 16 7 7.2374 9.0417 -1.4468 17 6 6.0090 8.7609 -2.1941 18 6 7.7952 10.3963 -1.4367 19 6 8.7582 10.5515 -2.5855 20 1 8.9366 9.7241 -3.2563 21 6 9.4116 11.7499 -2.7802 22 7 9.1940 12.7578 -1.9637 23 14 10.6047 11.9426 -4.2046 24 1 10.6716 10.6716 -4.9697 25 1 10.1383 13.0341 -5.0969 26 1 11.9533 12.2750 -3.6791 27 6 5.9235 4.2483 0.0024 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6765 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9337 0.9286 -0.8891 36 1 3.9330 0.9289 0.8908 37 1 5.8262 0.8696 0.0110 38 1 8.2654 1.1884 -0.0004 39 1 9.2136 3.4586 0.0015 40 1 8.6575 5.8996 0.4893 41 1 5.1540 8.8120 -1.5201 42 1 5.8903 9.4982 -2.9882 43 1 6.0690 7.7637 -2.6302 44 1 6.9885 11.1223 -1.5383 45 1 8.3206 10.5659 -0.4968 46 1 9.6534 13.6010 -2.1010 47 1 5.2668 5.1057 0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283250963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:36 Heat of formation + Delta-G solvation = -78.845953 kcal Electronic energy + Delta-G solvation = -27814.356625 eV Core-core repulsion = 23769.909785 eV Total energy + Delta-G solvation = -4044.446840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95491 -39.98811 -38.45217 -37.41315 -35.69333 -35.29909 -34.19476 -32.58458 -31.01004 -29.73702 -29.12654 -28.04971 -26.24574 -24.88849 -24.17937 -23.20090 -22.33738 -21.62629 -21.01147 -19.55908 -18.53362 -17.25453 -16.71405 -16.69046 -16.50976 -16.24052 -15.95293 -15.57670 -15.32845 -15.09597 -14.89588 -14.36961 -14.16884 -13.93554 -13.65666 -13.47644 -13.19796 -13.10653 -12.79541 -12.41798 -12.31883 -12.12508 -12.08247 -11.97658 -11.69896 -11.56647 -11.37996 -11.34869 -11.13163 -10.96883 -10.93549 -10.75030 -10.58994 -10.28967 -10.21227 -9.67308 -8.85004 -8.53651 -8.49272 -8.21152 -7.81408 -6.10381 -4.15491 1.02384 1.30620 1.91411 2.59826 2.97772 3.28004 3.35395 3.40248 3.55445 3.76977 4.02964 4.40498 4.42449 4.43701 4.59767 4.67352 4.77034 4.79672 4.82979 4.94731 5.05639 5.07579 5.20215 5.24537 5.31353 5.33429 5.39158 5.44328 5.64738 5.69033 5.75398 5.84879 5.93875 6.06259 6.11204 6.13531 6.23166 6.29529 6.45114 6.69018 6.81606 7.17317 7.26018 7.27376 7.35484 7.81398 7.89611 8.12259 8.18170 8.60567 8.89339 9.49538 10.97874 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.002067 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.363243 B =13545.778708 C =14378.293726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.059 3.941 5 O -0.312 6.312 6 C 0.147 3.853 7 C -0.227 4.227 8 C -0.062 4.062 9 C -0.180 4.180 10 C 0.188 3.812 11 N -0.652 5.652 12 C 0.508 3.492 13 O -0.497 6.497 14 C 0.494 3.506 15 O -0.522 6.522 16 N -0.561 5.561 17 C 0.078 3.922 18 C 0.242 3.758 19 C -0.528 4.528 20 H 0.060 0.940 21 C 0.062 3.938 22 N -0.893 5.893 23 Si 0.901 3.099 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 C -0.156 4.156 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.425 0.575 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.047 0.953 46 H 0.264 0.736 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.902 -25.993 5.423 29.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.159 4.159 4 C -0.016 4.016 5 O -0.226 6.226 6 C 0.101 3.899 7 C -0.247 4.247 8 C -0.081 4.081 9 C -0.200 4.200 10 C 0.093 3.907 11 N -0.299 5.299 12 C 0.292 3.708 13 O -0.371 6.371 14 C 0.275 3.725 15 O -0.399 6.399 16 N -0.293 5.293 17 C -0.065 4.065 18 C 0.123 3.877 19 C -0.567 4.567 20 H 0.078 0.922 21 C -0.140 4.140 22 N -0.532 5.532 23 Si 0.729 3.271 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.176 4.176 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.263 0.737 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.216 -25.562 5.310 28.825 hybrid contribution 1.177 0.064 -0.606 1.325 sum -11.040 -25.498 4.704 28.181 Atomic orbital electron populations 1.21751 0.95152 1.01846 1.02220 1.21430 0.96483 0.95605 1.02347 1.21595 0.92532 0.97737 1.04003 1.22841 0.95406 0.81982 1.01357 1.86076 1.18965 1.29054 1.88487 1.18707 0.82281 0.93470 0.95411 1.21194 0.94372 0.97888 1.11200 1.20672 0.94229 0.96474 0.96700 1.20879 0.99749 0.91395 1.07988 1.17414 0.91600 0.83967 0.97703 1.43265 1.29277 1.06730 1.50637 1.21031 0.85220 0.86493 0.78089 1.90698 1.20314 1.82356 1.43715 1.19501 0.85944 0.84597 0.82507 1.90749 1.20176 1.81567 1.47411 1.48127 1.24948 1.10968 1.45233 1.22058 0.85526 1.02706 0.96227 1.19536 0.94464 0.74662 0.98993 1.21417 1.24924 0.98228 1.12142 0.92159 1.24935 0.96782 0.95584 0.96742 1.69941 1.42888 1.03183 1.37201 0.86393 0.80778 0.78062 0.81907 1.19743 1.20883 1.20807 1.20473 0.93986 0.96151 1.07035 0.92504 0.92498 0.92461 0.91682 0.91720 0.90722 0.90634 0.92020 0.92065 0.85602 0.85353 0.85217 0.73675 0.93063 0.91022 0.89996 0.94058 0.93495 0.92639 0.83340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.15 0.37 -0.36 16 2 C -0.12 -0.61 5.93 -26.74 -0.16 -0.77 16 3 C -0.12 -0.82 5.58 -26.73 -0.15 -0.97 16 4 C 0.06 0.47 4.74 37.16 0.18 0.65 16 5 O -0.31 -3.73 10.13 -19.41 -0.20 -3.92 16 6 C 0.15 1.84 6.68 -39.24 -0.26 1.58 16 7 C -0.23 -2.30 9.04 -39.39 -0.36 -2.66 16 8 C -0.06 -0.59 10.03 -39.64 -0.40 -0.99 16 9 C -0.18 -1.98 9.96 -39.35 -0.39 -2.38 16 10 C 0.19 2.55 6.29 -83.77 -0.53 2.02 16 11 N -0.65 -9.51 5.32 -10.31 -0.05 -9.57 16 12 C 0.51 8.94 7.61 -11.63 -0.09 8.86 16 13 O -0.50 -9.00 10.71 5.47 0.06 -8.94 16 14 C 0.49 10.45 7.72 -11.64 -0.09 10.36 16 15 O -0.52 -12.30 16.12 5.48 0.09 -12.21 16 16 N -0.56 -12.37 2.86 -183.50 -0.52 -12.90 16 17 C 0.08 1.43 9.27 59.85 0.55 1.98 16 18 C 0.24 6.28 5.09 -5.19 -0.03 6.25 16 19 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 16 20 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 23 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C -0.16 -2.23 8.63 -39.23 -0.34 -2.56 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 36 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 37 H 0.13 0.96 6.29 -52.49 -0.33 0.63 16 38 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.42 5.54 8.30 -40.82 -0.34 5.20 16 41 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 42 H 0.07 1.28 8.03 -51.93 -0.42 0.87 16 43 H 0.08 1.46 5.84 -51.93 -0.30 1.16 16 44 H 0.04 1.08 8.07 -51.93 -0.42 0.66 16 45 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 46 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.15 2.37 6.23 -52.49 -0.33 2.04 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -32.50 393.57 -8.18 -40.68 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.09 Total: 2.17 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -2.11 Total: 7.45 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.16 Total: -47.87 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.05 Total: -25.07 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.50 -8.18 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283250963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.161 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds