Wall clock time and date at job start Tue Mar 31 2020 18:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47259 * 2 1 4 4 C 1.53002 * 109.47498 * 179.97438 * 3 2 1 5 5 O 1.42906 * 109.47002 * 180.02562 * 4 3 2 6 6 C 1.35895 * 116.99727 * 180.02562 * 5 4 3 7 7 C 1.38817 * 120.02091 * 359.72567 * 6 5 4 8 8 C 1.38181 * 120.09664 * 179.70043 * 7 6 5 9 9 C 1.38148 * 120.13182 * 0.59445 * 8 7 6 10 10 C 1.38946 * 120.03149 * 359.68571 * 9 8 7 11 11 N 1.39721 * 120.04723 * 180.02562 * 10 9 8 12 12 C 1.34776 * 120.00178 * 144.57812 * 11 10 9 13 13 O 1.21380 * 120.00069 * 5.10896 * 12 11 10 14 14 C 1.49349 * 120.00480 * 185.11342 * 12 11 10 15 15 O 1.21365 * 119.99425 * 359.86385 * 14 12 11 16 16 N 1.34769 * 120.00499 * 179.86215 * 14 12 11 17 17 C 1.46502 * 119.99948 * 354.35281 * 16 14 12 18 18 C 1.46501 * 120.00359 * 174.34248 * 16 14 12 19 19 C 1.50703 * 109.46814 * 90.00347 * 18 16 14 20 20 H 1.07999 * 120.00223 * 0.02562 * 19 18 16 21 21 C 1.37873 * 119.99886 * 180.02562 * 19 18 16 22 22 N 1.31520 * 120.00164 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99977 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47221 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47496 * 119.99931 * 23 21 19 26 26 H 1.48502 * 109.47115 * 239.99854 * 23 21 19 27 27 C 1.38573 * 120.01809 * 180.02562 * 6 5 4 28 28 H 1.09007 * 109.46815 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47644 * 299.99469 * 1 2 3 30 30 H 1.08997 * 109.47291 * 60.00319 * 1 2 3 31 31 H 1.09009 * 109.47506 * 239.99862 * 2 1 3 32 32 H 1.09002 * 109.47709 * 120.00270 * 2 1 3 33 33 H 1.09009 * 109.46974 * 59.99536 * 3 2 1 34 34 H 1.09002 * 109.47468 * 300.00509 * 3 2 1 35 35 H 1.08998 * 109.47032 * 60.00209 * 4 3 2 36 36 H 1.08997 * 109.47212 * 299.99780 * 4 3 2 37 37 H 1.07999 * 119.95015 * 359.97438 * 7 6 5 38 38 H 1.08005 * 119.93154 * 180.30376 * 8 7 6 39 39 H 1.08002 * 119.98457 * 179.69985 * 9 8 7 40 40 H 0.96998 * 120.00298 * 324.57643 * 11 10 9 41 41 H 1.08997 * 109.47300 * 84.05717 * 17 16 14 42 42 H 1.09006 * 109.46841 * 204.05663 * 17 16 14 43 43 H 1.09006 * 109.46569 * 324.05185 * 17 16 14 44 44 H 1.08997 * 109.47766 * 210.00500 * 18 16 14 45 45 H 1.09005 * 109.47097 * 330.01030 * 18 16 14 46 46 H 0.97003 * 119.99666 * 180.02562 * 22 21 19 47 47 H 1.07999 * 120.06303 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0462 2.7899 0.0012 6 6 5.3935 2.9679 0.0013 7 6 6.2395 1.8674 0.0066 8 6 7.6096 2.0466 0.0004 9 6 8.1423 3.3213 0.0014 10 6 7.3005 4.4267 0.0020 11 7 7.8389 5.7160 0.0025 12 6 7.2208 6.7047 -0.6735 13 8 6.1493 6.4986 -1.2052 14 6 7.8542 8.0538 -0.7685 15 8 8.9245 8.2606 -0.2349 16 7 7.2374 9.0417 -1.4468 17 6 6.0090 8.7609 -2.1941 18 6 7.7952 10.3963 -1.4367 19 6 8.7582 10.5515 -2.5855 20 1 8.9366 9.7241 -3.2563 21 6 9.4116 11.7499 -2.7802 22 7 9.1940 12.7578 -1.9637 23 14 10.6047 11.9426 -4.2046 24 1 10.6716 10.6716 -4.9697 25 1 10.1383 13.0341 -5.0969 26 1 11.9533 12.2750 -3.6791 27 6 5.9235 4.2483 0.0024 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6765 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9337 0.9286 -0.8891 36 1 3.9330 0.9289 0.8908 37 1 5.8262 0.8696 0.0110 38 1 8.2654 1.1884 -0.0004 39 1 9.2136 3.4586 0.0015 40 1 8.6575 5.8996 0.4893 41 1 5.1540 8.8120 -1.5201 42 1 5.8903 9.4982 -2.9882 43 1 6.0690 7.7637 -2.6302 44 1 6.9885 11.1223 -1.5383 45 1 8.3206 10.5659 -0.4968 46 1 9.6534 13.6010 -2.1010 47 1 5.2668 5.1057 0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283250963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:35 Heat of formation + Delta-G solvation = -98.803408 kcal Electronic energy + Delta-G solvation = -27815.222046 eV Core-core repulsion = 23769.909785 eV Total energy + Delta-G solvation = -4045.312260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23706 -41.04344 -39.83663 -38.54718 -37.10629 -36.09712 -35.47063 -34.65871 -31.80235 -30.71651 -30.01043 -29.80244 -27.80535 -26.43945 -25.11789 -24.38185 -23.55242 -22.34900 -21.89115 -20.99132 -19.55723 -18.78437 -18.70124 -17.90157 -17.36935 -17.28228 -17.01249 -16.89402 -16.85199 -16.39387 -16.05982 -15.65685 -15.33907 -14.95326 -14.64953 -14.53781 -14.34771 -14.23778 -13.93102 -13.88952 -13.65864 -13.44635 -13.22352 -13.08229 -12.93221 -12.73197 -12.66738 -12.40860 -12.27921 -12.22383 -12.03312 -11.94930 -11.78251 -11.73062 -11.49156 -11.28267 -10.66786 -10.40430 -9.68983 -9.50444 -9.10931 -8.25942 -6.40457 -0.07613 0.43013 0.57066 1.25048 1.38185 1.39769 1.52428 2.05965 2.16841 2.36733 2.59973 2.76306 3.04718 3.25646 3.82799 3.92813 3.94586 4.10595 4.13354 4.23015 4.27377 4.36052 4.37209 4.42530 4.51338 4.58828 4.64879 4.67228 4.83968 4.85921 4.92082 4.96593 5.03198 5.11447 5.19650 5.20954 5.23595 5.30488 5.32358 5.40371 5.44022 5.44533 5.66956 5.76052 5.94012 5.97604 6.34764 6.46399 6.61976 6.68288 6.93974 7.29852 8.81969 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.002067 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.363243 B =13545.778708 C =14378.293726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.119 4.119 4 C 0.053 3.947 5 O -0.336 6.336 6 C 0.136 3.864 7 C -0.216 4.216 8 C -0.053 4.053 9 C -0.177 4.177 10 C 0.164 3.836 11 N -0.637 5.637 12 C 0.518 3.482 13 O -0.505 6.505 14 C 0.489 3.511 15 O -0.553 6.553 16 N -0.571 5.571 17 C 0.082 3.918 18 C 0.255 3.745 19 C -0.547 4.547 20 H 0.053 0.947 21 C 0.012 3.988 22 N -0.924 5.924 23 Si 0.970 3.030 24 H -0.269 1.269 25 H -0.270 1.270 26 H -0.278 1.278 27 C -0.181 4.181 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.157 0.843 38 H 0.168 0.832 39 H 0.150 0.850 40 H 0.431 0.569 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.035 0.965 45 H 0.014 0.986 46 H 0.269 0.731 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.399 -29.161 4.743 31.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.157 4.157 4 C -0.022 4.022 5 O -0.250 6.250 6 C 0.090 3.910 7 C -0.236 4.236 8 C -0.072 4.072 9 C -0.197 4.197 10 C 0.070 3.930 11 N -0.284 5.284 12 C 0.300 3.700 13 O -0.379 6.379 14 C 0.271 3.729 15 O -0.432 6.432 16 N -0.302 5.302 17 C -0.060 4.060 18 C 0.135 3.865 19 C -0.585 4.585 20 H 0.071 0.929 21 C -0.188 4.188 22 N -0.563 5.563 23 Si 0.794 3.206 24 H -0.194 1.194 25 H -0.195 1.195 26 H -0.204 1.204 27 C -0.202 4.202 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.174 0.826 38 H 0.185 0.815 39 H 0.168 0.832 40 H 0.271 0.729 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.053 0.947 45 H 0.032 0.968 46 H 0.078 0.922 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.741 -28.779 4.640 31.427 hybrid contribution 0.951 0.926 -0.319 1.366 sum -10.789 -27.853 4.321 30.181 Atomic orbital electron populations 1.21772 0.95132 1.02342 1.01931 1.21411 0.96462 0.94305 1.03179 1.21603 0.92035 0.98895 1.03159 1.23120 0.95869 0.80498 1.02678 1.86057 1.18891 1.31550 1.88494 1.18825 0.82976 0.93502 0.95741 1.21572 0.94468 0.98427 1.09084 1.21149 0.94511 0.96950 0.94541 1.21179 1.00514 0.91135 1.06847 1.17605 0.91810 0.83682 0.99883 1.43078 1.29000 1.06787 1.49538 1.20176 0.85153 0.85595 0.79069 1.90699 1.20437 1.82201 1.44596 1.20113 0.85533 0.85838 0.81394 1.90713 1.21602 1.82509 1.48409 1.48111 1.26054 1.09978 1.46077 1.22167 0.84481 1.03014 0.96316 1.19081 0.93769 0.76833 0.96795 1.21642 1.25841 0.98344 1.12687 0.92854 1.25821 0.98396 0.95145 0.99409 1.70043 1.43809 1.03723 1.38760 0.85332 0.78299 0.78335 0.78621 1.19365 1.19480 1.20364 1.20393 0.94201 0.96459 1.09123 0.91598 0.92743 0.92878 0.90928 0.90741 0.91452 0.91689 0.90768 0.90411 0.82576 0.81455 0.83235 0.72934 0.91412 0.90811 0.89312 0.94660 0.96840 0.92187 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.57 16 2 C -0.12 -0.95 5.93 30.59 0.18 -0.76 16 3 C -0.12 -1.49 5.58 30.59 0.17 -1.32 16 4 C 0.05 0.74 4.74 71.98 0.34 1.08 16 5 O -0.34 -7.81 10.13 -92.37 -0.94 -8.75 16 6 C 0.14 3.24 6.68 22.49 0.15 3.39 16 7 C -0.22 -3.66 9.04 22.39 0.20 -3.46 16 8 C -0.05 -0.80 10.03 22.23 0.22 -0.58 16 9 C -0.18 -3.44 9.96 22.42 0.22 -3.22 16 10 C 0.16 4.33 6.29 38.20 0.24 4.57 16 11 N -0.64 -18.66 5.32 -304.88 -1.62 -20.28 16 12 C 0.52 18.61 7.61 87.24 0.66 19.27 16 13 O -0.50 -18.62 10.71 -3.34 -0.04 -18.66 16 14 C 0.49 21.37 7.72 87.24 0.67 22.04 16 15 O -0.55 -27.05 16.12 -3.29 -0.05 -27.11 16 16 N -0.57 -25.99 2.86 -852.82 -2.44 -28.42 16 17 C 0.08 3.04 9.27 127.77 1.18 4.23 16 18 C 0.26 13.80 5.09 85.63 0.44 14.23 16 19 C -0.55 -31.50 9.39 25.60 0.24 -31.26 16 20 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 21 C 0.01 0.68 5.46 84.65 0.46 1.14 16 22 N -0.92 -54.91 13.29 21.45 0.28 -54.62 16 23 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 C -0.18 -5.21 8.63 22.50 0.19 -5.02 16 28 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.85 7.67 -2.39 -0.02 0.83 16 36 H 0.08 0.82 7.65 -2.39 -0.02 0.80 16 37 H 0.16 1.65 6.29 -2.91 -0.02 1.64 16 38 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 39 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.43 11.27 8.30 -92.71 -0.77 10.50 16 41 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 42 H 0.07 2.67 8.03 -2.38 -0.02 2.65 16 43 H 0.09 3.19 5.84 -2.38 -0.01 3.18 16 44 H 0.04 1.92 8.07 -2.39 -0.02 1.90 16 45 H 0.01 0.81 7.51 -2.38 -0.02 0.79 16 46 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 47 H 0.12 4.09 6.23 -2.91 -0.02 4.07 16 Total: -1.00 -72.10 393.57 3.74 -68.36 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.21 Total: 19.06 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 6.30 Total: 23.77 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -3.77 Total: -103.33 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -1.03 Total: -54.51 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -72.10 3.74 -68.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283250963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.444 kcal (2) G-P(sol) polarization free energy of solvation -72.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds