Wall clock time and date at job start Tue Mar 31 2020 19:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47310 * 2 1 4 4 C 1.53003 * 109.47109 * 240.00013 * 2 1 3 5 5 O 1.45199 * 109.47133 * 120.00025 * 2 1 3 6 6 C 1.34765 * 116.99932 * 60.00226 * 5 2 1 7 7 O 1.21527 * 120.00280 * 359.97438 * 6 5 2 8 8 C 1.47289 * 119.99913 * 180.02562 * 6 5 2 9 9 C 1.40045 * 120.61499 * 354.88470 * 8 6 5 10 10 C 1.38298 * 118.35988 * 179.97438 * 9 8 6 11 11 C 1.38393 * 119.52343 * 0.02562 * 10 9 8 12 12 N 1.31845 * 121.22738 * 0.02562 * 11 10 9 13 13 C 1.32433 * 121.78182 * 359.72317 * 12 11 10 14 14 N 1.38221 * 119.83307 * 180.29394 * 13 12 11 15 15 C 1.47904 * 111.00259 * 37.65791 * 14 13 12 16 16 C 1.53994 * 107.05586 * 214.16043 * 15 14 13 17 17 C 1.54597 * 105.14490 * 1.22072 * 16 15 14 18 18 O 1.42902 * 110.72619 * 263.60545 * 17 16 15 19 19 C 1.50695 * 110.72362 * 140.49578 * 17 16 15 20 20 H 1.08002 * 120.00130 * 241.45723 * 19 17 16 21 21 C 1.37872 * 120.00197 * 61.45402 * 19 17 16 22 22 N 1.31515 * 119.99852 * 0.02562 * 21 19 17 23 23 Si 1.86805 * 120.00225 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46708 * 90.00312 * 23 21 19 25 25 H 1.48497 * 109.47327 * 210.00091 * 23 21 19 26 26 H 1.48499 * 109.46982 * 330.00705 * 23 21 19 27 27 C 1.48533 * 110.99798 * 280.25979 * 14 13 12 28 28 H 1.09000 * 109.46865 * 299.99930 * 1 2 3 29 29 H 1.08997 * 109.46992 * 59.99868 * 1 2 3 30 30 H 1.08999 * 109.47045 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47041 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47215 * 299.99982 * 3 2 1 33 33 H 1.08996 * 109.47365 * 59.99774 * 3 2 1 34 34 H 1.08999 * 109.47276 * 299.99992 * 4 2 1 35 35 H 1.08997 * 109.47096 * 60.00183 * 4 2 1 36 36 H 1.09006 * 109.47009 * 180.02562 * 4 2 1 37 37 H 1.07999 * 120.81329 * 359.96421 * 9 8 6 38 38 H 1.08003 * 120.24139 * 179.97438 * 10 9 8 39 39 H 1.07994 * 119.39116 * 179.97438 * 11 10 9 40 40 H 1.08992 * 109.91480 * 333.50780 * 15 14 13 41 41 H 1.09001 * 109.91455 * 94.60722 * 15 14 13 42 42 H 1.08998 * 110.30834 * 120.14387 * 16 15 14 43 43 H 1.09006 * 110.30642 * 242.21198 * 16 15 14 44 44 H 0.96701 * 113.99610 * 298.54567 * 18 17 16 45 45 H 0.97006 * 119.99978 * 179.97438 * 22 21 19 46 46 H 1.08997 * 110.67434 * 278.15848 * 27 14 13 47 47 H 1.08998 * 110.66761 * 41.28956 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6519 -1.9735 1.3384 7 8 0.9504 -2.5108 0.5040 8 6 2.1054 -2.7310 2.5174 9 6 2.9985 -2.1593 3.4321 10 6 3.3932 -2.9122 4.5231 11 6 2.9010 -4.1961 4.6797 12 7 2.0614 -4.7174 3.8069 13 6 1.6467 -4.0398 2.7474 14 7 0.7611 -4.6236 1.8612 15 6 -0.2333 -5.4538 2.5750 16 6 -0.5594 -6.6515 1.6637 17 6 0.3308 -6.4624 0.4140 18 8 -0.3986 -5.8209 -0.6341 19 6 0.8810 -7.7849 -0.0539 20 1 1.9482 -7.9498 -0.0721 21 6 0.0221 -8.7846 -0.4587 22 7 -1.2774 -8.5837 -0.4370 23 14 0.7042 -10.4238 -1.0395 24 1 0.8327 -11.3446 0.1186 25 1 -0.2168 -11.0157 -2.0427 26 1 2.0389 -10.2142 -1.6556 27 6 1.4660 -5.5445 0.9332 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 3.3700 -1.1554 3.2890 38 1 4.0812 -2.5014 5.2472 39 1 3.2109 -4.7822 5.5321 40 1 0.1859 -5.8073 3.5170 41 1 -1.1350 -4.8717 2.7652 42 1 -0.3129 -7.5871 2.1658 43 1 -1.6131 -6.6388 1.3848 44 1 -1.1674 -6.3206 -0.9411 45 1 -1.8818 -9.2868 -0.7221 46 1 1.9188 -4.9902 0.1111 47 1 2.2178 -6.1266 1.4662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591975310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:35 Heat of formation + Delta-G solvation = -71.840094 kcal Electronic energy + Delta-G solvation = -30518.184847 eV Core-core repulsion = 26474.041804 eV Total energy + Delta-G solvation = -4044.143043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.92259 -39.91001 -37.91961 -36.56403 -34.76589 -33.99076 -32.41702 -32.04733 -31.21244 -28.43002 -27.99958 -27.42380 -27.31781 -25.07482 -24.53557 -23.13368 -21.69391 -20.30688 -19.53208 -19.46305 -17.61872 -17.21631 -16.74843 -16.34709 -16.05096 -15.71844 -14.89315 -14.82598 -14.61616 -14.37840 -14.19065 -13.92568 -13.61642 -13.54461 -13.25693 -12.76074 -12.62475 -12.49775 -12.27718 -12.16552 -11.91437 -11.85125 -11.76949 -11.53667 -11.34815 -11.23984 -11.12044 -11.00272 -10.64017 -10.41565 -10.33899 -10.22426 -9.92847 -9.82410 -9.67592 -9.51879 -9.23198 -8.86508 -8.53943 -8.05028 -7.76704 -6.15661 -4.23778 0.67495 1.21014 2.77393 2.88174 3.25538 3.32633 3.36672 3.82301 4.10857 4.35952 4.52821 4.73048 4.75878 4.77196 4.84228 4.92401 5.01885 5.11897 5.32917 5.38017 5.44174 5.52894 5.68810 5.72484 5.76033 5.82506 5.89726 5.91566 5.97912 5.98697 6.01824 6.13992 6.27681 6.36922 6.38369 6.43524 6.56676 6.63937 6.75865 6.89880 7.10606 7.31768 7.54024 7.56804 7.78899 7.86689 7.98417 8.22224 8.23820 8.77941 9.44763 9.64852 10.91331 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012909 B = 0.004011 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.571369 B = 6979.922407 C = 8356.864932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.121 3.879 3 C -0.138 4.138 4 C -0.184 4.184 5 O -0.360 6.360 6 C 0.500 3.500 7 O -0.437 6.437 8 C -0.166 4.166 9 C -0.017 4.017 10 C -0.210 4.210 11 C 0.145 3.855 12 N -0.517 5.517 13 C 0.366 3.634 14 N -0.451 5.451 15 C 0.033 3.967 16 C -0.125 4.125 17 C 0.262 3.738 18 O -0.574 6.574 19 C -0.536 4.536 20 H 0.060 0.940 21 C 0.073 3.927 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.075 3.925 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.376 0.624 45 H 0.266 0.734 46 H 0.076 0.924 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.264 16.714 7.232 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.085 3.915 3 C -0.195 4.195 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.341 3.659 7 O -0.320 6.320 8 C -0.172 4.172 9 C -0.043 4.043 10 C -0.230 4.230 11 C -0.015 4.015 12 N -0.230 5.230 13 C 0.136 3.864 14 N -0.173 5.173 15 C -0.094 4.094 16 C -0.164 4.164 17 C 0.222 3.778 18 O -0.381 6.381 19 C -0.575 4.575 20 H 0.078 0.922 21 C -0.130 4.130 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.049 4.049 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.164 0.836 38 H 0.157 0.843 39 H 0.175 0.825 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.225 0.775 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.728 16.496 6.765 19.057 hybrid contribution 0.506 -1.058 0.051 1.174 sum 7.234 15.438 6.816 18.361 Atomic orbital electron populations 1.22494 0.94041 1.05400 1.02153 1.22071 0.94436 0.91773 0.83178 1.21832 1.01945 0.92996 1.02765 1.22501 1.01334 1.03887 0.96426 1.86536 1.70692 1.25452 1.45270 1.20538 0.79203 0.80216 0.85992 1.90958 1.31679 1.68848 1.40557 1.19853 1.04960 0.94813 0.97544 1.21823 0.91704 0.99616 0.91181 1.21996 1.04340 0.96594 1.00085 1.22884 0.90118 0.92663 0.95803 1.68069 1.13289 1.36682 1.04972 1.20400 0.87723 0.89226 0.89018 1.62632 1.10204 1.31499 1.12935 1.23050 0.94123 0.94835 0.97405 1.22912 1.01613 0.94648 0.97220 1.19266 0.86396 0.87936 0.84231 1.86201 1.45656 1.50628 1.55628 1.21559 0.93598 0.97672 1.44671 0.92198 1.24968 0.94811 0.98741 0.94466 1.69742 1.01716 1.34265 1.47521 0.86486 0.79007 0.83301 0.78553 1.20579 1.21059 1.19809 1.23191 0.96600 0.91742 0.93411 0.92377 0.91349 0.89082 0.91713 0.90543 0.91729 0.89115 0.91297 0.92327 0.83636 0.84329 0.82495 0.92189 0.91990 0.91804 0.91377 0.77542 0.92388 0.90517 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 8.37 37.16 0.31 -2.03 16 2 C 0.12 1.50 1.13 -90.62 -0.10 1.40 16 3 C -0.14 -1.23 8.85 37.16 0.33 -0.90 16 4 C -0.18 -2.38 8.37 37.16 0.31 -2.07 16 5 O -0.36 -5.11 9.22 -40.67 -0.37 -5.49 16 6 C 0.50 8.49 7.19 34.41 0.25 8.74 16 7 O -0.44 -8.78 10.37 -19.29 -0.20 -8.98 16 8 C -0.17 -2.71 5.91 -104.66 -0.62 -3.33 16 9 C -0.02 -0.21 9.73 -38.88 -0.38 -0.59 16 10 C -0.21 -2.19 10.08 -39.50 -0.40 -2.59 16 11 C 0.15 1.81 11.16 -17.49 -0.20 1.62 16 12 N -0.52 -8.82 8.67 -12.19 -0.11 -8.93 16 13 C 0.37 6.83 5.53 -155.20 -0.86 5.98 16 14 N -0.45 -9.71 3.30 -169.01 -0.56 -10.27 16 15 C 0.03 0.70 6.59 -2.75 -0.02 0.68 16 16 C -0.13 -3.03 5.26 -25.37 -0.13 -3.16 16 17 C 0.26 6.80 0.95 -89.91 -0.09 6.72 16 18 O -0.57 -15.77 13.09 -35.23 -0.46 -16.23 16 19 C -0.54 -14.77 8.15 -34.44 -0.28 -15.05 16 20 H 0.06 1.64 7.78 -52.49 -0.41 1.23 16 21 C 0.07 1.96 5.28 -17.82 -0.09 1.86 16 22 N -0.89 -24.26 11.00 55.43 0.61 -23.66 16 23 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.07 1.76 5.46 -1.89 -0.01 1.75 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.47 5.88 -51.93 -0.31 1.17 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.49 5.88 -51.93 -0.31 1.18 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.15 1.40 7.71 -52.49 -0.40 0.99 16 38 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.06 1.23 6.57 -51.93 -0.34 0.89 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.06 1.60 7.84 -51.93 -0.41 1.19 16 43 H 0.07 1.71 7.98 -51.93 -0.41 1.30 16 44 H 0.38 10.33 7.46 45.56 0.34 10.67 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.08 1.87 8.03 -51.93 -0.42 1.46 16 47 H 0.05 1.22 7.90 -51.93 -0.41 0.81 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -30.88 377.11 -8.84 -39.72 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -6.44 Total: 13.13 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -1.97 Total: -0.98 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -0.05 Total: -42.85 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -1.04 Total: -30.69 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.88 -8.84 -39.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.119 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds