Wall clock time and date at job start Tue Mar 31 2020 18:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47358 * 2 1 4 4 C 1.53005 * 109.47313 * 120.00276 * 2 1 3 5 5 N 1.46501 * 109.47081 * 64.99715 * 4 2 1 6 6 C 1.35432 * 119.47307 * 269.98140 * 5 4 2 7 7 C 1.35756 * 121.23520 * 180.02562 * 6 5 4 8 8 C 1.39472 * 120.12795 * 359.78207 * 7 6 5 9 9 C 1.39338 * 118.95926 * 0.46759 * 8 7 6 10 10 C 1.47078 * 120.58801 * 179.79935 * 9 8 7 11 11 O 1.21642 * 120.00151 * 259.29355 * 10 9 8 12 12 N 1.34780 * 120.00331 * 79.29068 * 10 9 8 13 13 C 1.47416 * 125.65202 * 174.99954 * 12 10 9 14 14 C 1.54910 * 104.83573 * 155.90946 * 13 12 10 15 15 C 1.55150 * 101.58202 * 37.00482 * 14 13 12 16 16 O 1.42905 * 110.71690 * 82.86369 * 15 14 13 17 17 C 1.50702 * 110.72527 * 205.95735 * 15 14 13 18 18 H 1.08001 * 119.99486 * 357.56606 * 17 15 14 19 19 C 1.37870 * 120.00248 * 177.56049 * 17 15 14 20 20 N 1.31517 * 120.00137 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00134 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46960 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47446 * 119.99974 * 21 19 17 24 24 H 1.48497 * 109.47363 * 240.00304 * 21 19 17 25 25 C 1.47023 * 125.64572 * 355.04183 * 12 10 9 26 26 C 1.34657 * 119.47161 * 89.99784 * 5 4 2 27 27 O 1.21886 * 120.10353 * 359.95934 * 26 5 4 28 28 H 1.09000 * 109.46871 * 299.99703 * 1 2 3 29 29 H 1.08994 * 109.47314 * 59.99816 * 1 2 3 30 30 H 1.08999 * 109.46889 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47043 * 239.99859 * 2 1 3 32 32 H 1.09004 * 109.47393 * 179.97438 * 3 2 1 33 33 H 1.09008 * 109.47213 * 300.00340 * 3 2 1 34 34 H 1.09006 * 109.47159 * 59.99930 * 3 2 1 35 35 H 1.09000 * 109.46709 * 304.99775 * 4 2 1 36 36 H 1.08996 * 109.46933 * 184.99519 * 4 2 1 37 37 H 1.08006 * 119.38522 * 0.02562 * 6 5 4 38 38 H 1.07997 * 119.93536 * 180.02562 * 7 6 5 39 39 H 1.08005 * 120.52326 * 180.24301 * 8 7 6 40 40 H 1.08997 * 110.37045 * 37.06878 * 13 12 10 41 41 H 1.09003 * 110.37009 * 274.74445 * 13 12 10 42 42 H 1.09001 * 111.00223 * 278.93342 * 14 13 12 43 43 H 1.08996 * 111.03930 * 155.10207 * 14 13 12 44 44 H 0.96698 * 113.99938 * 180.02562 * 16 15 14 45 45 H 0.97002 * 119.99980 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.88271 * 61.60640 * 25 12 10 47 47 H 1.09008 * 109.88222 * 300.44086 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 0.4689 -2.5216 1.7218 7 6 0.0745 -3.8201 1.6877 8 6 0.8894 -4.7839 1.0941 9 6 2.1110 -4.3923 0.5502 10 6 3.0003 -5.3796 -0.0804 11 8 3.9574 -5.8144 0.5316 12 7 2.7548 -5.8026 -1.3363 13 6 3.6162 -6.7036 -2.1233 14 6 2.6663 -7.3575 -3.1576 15 6 1.7173 -6.1782 -3.4980 16 8 2.3037 -5.3258 -4.4838 17 6 0.3787 -6.6887 -3.9656 18 1 0.2094 -7.7510 -4.0611 19 6 -0.6297 -5.7996 -4.2714 20 7 -0.4233 -4.5059 -4.1555 21 14 -2.2891 -6.4324 -4.8503 22 1 -2.2643 -7.9165 -4.8963 23 1 -3.3461 -5.9835 -3.9088 24 1 -2.5760 -5.9005 -6.2068 25 6 1.5840 -5.4411 -2.1487 26 6 2.4789 -3.0232 0.6094 27 8 3.5398 -2.6543 0.1364 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6055 -0.2618 2.1369 36 1 3.1264 -0.6444 1.2950 37 1 -0.1732 -1.7847 2.1813 38 1 -0.8739 -4.1068 2.1174 39 1 0.5801 -5.8182 1.0599 40 1 4.0577 -7.4645 -1.4797 41 1 4.3961 -6.1357 -2.6306 42 1 2.1154 -8.1863 -2.7128 43 1 3.2149 -7.6850 -4.0405 44 1 1.7505 -4.5724 -4.7316 45 1 -1.1327 -3.8804 -4.3710 46 1 1.5663 -4.3640 -2.3148 47 1 0.6707 -5.7554 -1.6433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823528708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:51 Heat of formation + Delta-G solvation = -89.865586 kcal Electronic energy + Delta-G solvation = -30461.370651 eV Core-core repulsion = 26416.445963 eV Total energy + Delta-G solvation = -4044.924687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.44443 -39.19014 -37.29039 -36.80269 -36.30070 -34.12088 -33.36738 -32.23140 -30.63669 -29.47348 -27.78424 -27.44654 -27.08084 -25.25068 -24.55582 -22.80102 -22.27536 -20.51605 -19.68559 -19.27930 -17.45235 -17.39509 -17.13718 -16.59962 -16.13708 -15.64226 -15.54709 -15.04151 -14.79964 -14.49367 -14.42808 -14.10022 -13.86594 -13.19485 -12.96922 -12.91915 -12.87954 -12.71657 -12.52899 -12.38694 -12.16247 -11.93400 -11.77972 -11.63470 -11.52475 -11.44514 -11.15974 -11.09914 -10.91690 -10.74481 -10.54963 -10.51756 -10.19334 -9.91892 -9.89514 -9.41306 -9.32327 -8.72587 -8.31331 -7.86928 -7.79237 -6.34059 -4.42704 0.71526 1.96152 2.48042 3.13716 3.21960 3.23551 3.27741 3.55648 3.88624 4.21373 4.41189 4.47166 4.58091 4.80978 4.87827 4.92474 4.97067 5.08083 5.14205 5.30683 5.35792 5.38801 5.48118 5.60281 5.63114 5.69678 5.82676 5.87095 5.91990 5.95259 6.01698 6.06558 6.09455 6.14071 6.21509 6.31654 6.50402 6.55556 6.74945 6.83897 7.02193 7.08031 7.16922 7.32837 7.68364 7.95855 8.13247 8.29652 8.60501 8.77534 9.26754 9.40263 10.73035 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010298 B = 0.004634 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.285965 B = 6040.849630 C = 7224.177490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.142 4.142 4 C 0.095 3.905 5 N -0.490 5.490 6 C 0.142 3.858 7 C -0.230 4.230 8 C 0.020 3.980 9 C -0.237 4.237 10 C 0.596 3.404 11 O -0.553 6.553 12 N -0.602 5.602 13 C 0.110 3.890 14 C -0.118 4.118 15 C 0.248 3.752 16 O -0.583 6.583 17 C -0.534 4.534 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.902 3.098 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.099 3.901 26 C 0.536 3.464 27 O -0.534 6.534 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.161 0.839 38 H 0.150 0.850 39 H 0.138 0.862 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.383 0.617 45 H 0.269 0.731 46 H 0.062 0.938 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.662 8.865 11.830 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.134 4.134 3 C -0.200 4.200 4 C -0.026 4.026 5 N -0.200 5.200 6 C 0.014 3.986 7 C -0.253 4.253 8 C -0.002 4.002 9 C -0.244 4.244 10 C 0.383 3.617 11 O -0.432 6.432 12 N -0.334 5.334 13 C -0.013 4.013 14 C -0.156 4.156 15 C 0.207 3.793 16 O -0.393 6.393 17 C -0.572 4.572 18 H 0.086 0.914 19 C -0.132 4.132 20 N -0.535 5.535 21 Si 0.729 3.271 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.023 4.023 26 C 0.336 3.664 27 O -0.415 6.415 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.179 0.821 38 H 0.167 0.833 39 H 0.156 0.844 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.234 0.766 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.016 8.688 11.912 14.881 hybrid contribution -1.759 0.260 -0.357 1.813 sum -3.775 8.948 11.556 15.094 Atomic orbital electron populations 1.21944 0.94615 1.02260 1.02150 1.21477 0.96564 0.96828 0.98490 1.21740 1.01422 0.94685 1.02116 1.22140 1.03292 0.77884 0.99300 1.45420 1.16945 1.10377 1.47237 1.21990 0.86432 0.97336 0.92855 1.20521 1.03261 0.91578 1.09981 1.21779 0.89742 1.00399 0.88300 1.20867 0.98869 0.93879 1.10758 1.17024 0.83807 0.80502 0.80391 1.90730 1.30475 1.58711 1.63306 1.48664 1.24995 1.46973 1.12774 1.22213 0.93722 0.92488 0.92841 1.22778 0.97271 0.98061 0.97524 1.19477 0.90437 0.85766 0.83587 1.86121 1.49426 1.42869 1.60848 1.21598 0.96075 0.93940 1.45624 0.91398 1.25064 0.99205 0.94850 0.94112 1.69674 1.34226 1.01137 1.48489 0.86375 0.82928 0.79297 0.78484 1.19544 1.20828 1.20752 1.23031 0.85360 1.00449 0.93494 1.16661 0.84383 0.85480 0.79858 1.90931 1.22767 1.79946 1.47819 0.92620 0.91907 0.92272 0.89813 0.92212 0.91942 0.92555 0.89119 0.88078 0.82142 0.83277 0.84377 0.91548 0.91788 0.90535 0.90471 0.76584 0.92146 0.91927 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.63 37.16 0.32 -1.09 16 2 C -0.11 -1.22 3.12 -90.62 -0.28 -1.50 16 3 C -0.14 -1.20 9.19 37.15 0.34 -0.85 16 4 C 0.10 1.00 4.83 -4.04 -0.02 0.98 16 5 N -0.49 -6.53 2.46 -119.34 -0.29 -6.82 16 6 C 0.14 1.43 8.20 -16.85 -0.14 1.29 16 7 C -0.23 -2.51 9.99 -40.01 -0.40 -2.91 16 8 C 0.02 0.30 9.91 -38.71 -0.38 -0.08 16 9 C -0.24 -4.54 4.85 -104.51 -0.51 -5.05 16 10 C 0.60 13.47 6.84 -12.67 -0.09 13.39 16 11 O -0.55 -13.83 17.34 5.24 0.09 -13.74 16 12 N -0.60 -13.53 3.33 -171.92 -0.57 -14.10 16 13 C 0.11 2.32 6.92 -2.53 -0.02 2.30 16 14 C -0.12 -2.50 6.22 -24.59 -0.15 -2.65 16 15 C 0.25 6.00 0.86 -89.94 -0.08 5.92 16 16 O -0.58 -15.02 13.09 -35.23 -0.46 -15.48 16 17 C -0.53 -13.53 8.12 -34.44 -0.28 -13.81 16 18 H 0.07 1.71 7.77 -52.49 -0.41 1.30 16 19 C 0.07 1.75 5.26 -17.82 -0.09 1.66 16 20 N -0.90 -22.60 10.97 55.43 0.61 -21.99 16 21 Si 0.90 19.51 29.54 -169.99 -5.02 14.48 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 25 C 0.10 2.30 5.00 -3.06 -0.02 2.29 16 26 C 0.54 10.07 7.44 -14.92 -0.11 9.96 16 27 O -0.53 -12.03 16.11 5.02 0.08 -11.95 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.62 6.34 -51.93 -0.33 0.29 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.61 8.00 -51.93 -0.42 0.20 16 36 H 0.10 1.22 7.38 -51.93 -0.38 0.83 16 37 H 0.16 0.89 7.88 -52.48 -0.41 0.48 16 38 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.14 1.87 8.06 -52.48 -0.42 1.45 16 40 H 0.07 1.31 7.99 -51.93 -0.41 0.89 16 41 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 43 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.38 10.01 7.17 45.56 0.33 10.34 16 45 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 46 H 0.06 1.59 8.01 -51.93 -0.42 1.17 16 47 H 0.06 1.51 7.82 -51.92 -0.41 1.11 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -33.35 385.51 -8.30 -41.65 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -6.64 Total: 12.29 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -1.90 Total: 9.84 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.26 Total: -42.91 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -0.29 Total: -41.16 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.35 -8.30 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.219 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds