Wall clock time and date at job start Tue Mar 31 2020 18:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47358 * 2 1 4 4 C 1.53005 * 109.47313 * 120.00276 * 2 1 3 5 5 N 1.46501 * 109.47081 * 64.99715 * 4 2 1 6 6 C 1.35432 * 119.47307 * 269.98140 * 5 4 2 7 7 C 1.35756 * 121.23520 * 180.02562 * 6 5 4 8 8 C 1.39472 * 120.12795 * 359.78207 * 7 6 5 9 9 C 1.39338 * 118.95926 * 0.46759 * 8 7 6 10 10 C 1.47078 * 120.58801 * 179.79935 * 9 8 7 11 11 O 1.21642 * 120.00151 * 259.29355 * 10 9 8 12 12 N 1.34780 * 120.00331 * 79.29068 * 10 9 8 13 13 C 1.47416 * 125.65202 * 174.99954 * 12 10 9 14 14 C 1.54910 * 104.83573 * 155.90946 * 13 12 10 15 15 C 1.55150 * 101.58202 * 37.00482 * 14 13 12 16 16 O 1.42905 * 110.71690 * 82.86369 * 15 14 13 17 17 C 1.50702 * 110.72527 * 205.95735 * 15 14 13 18 18 H 1.08001 * 119.99486 * 357.56606 * 17 15 14 19 19 C 1.37870 * 120.00248 * 177.56049 * 17 15 14 20 20 N 1.31517 * 120.00137 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00134 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46960 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47446 * 119.99974 * 21 19 17 24 24 H 1.48497 * 109.47363 * 240.00304 * 21 19 17 25 25 C 1.47023 * 125.64572 * 355.04183 * 12 10 9 26 26 C 1.34657 * 119.47161 * 89.99784 * 5 4 2 27 27 O 1.21886 * 120.10353 * 359.95934 * 26 5 4 28 28 H 1.09000 * 109.46871 * 299.99703 * 1 2 3 29 29 H 1.08994 * 109.47314 * 59.99816 * 1 2 3 30 30 H 1.08999 * 109.46889 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47043 * 239.99859 * 2 1 3 32 32 H 1.09004 * 109.47393 * 179.97438 * 3 2 1 33 33 H 1.09008 * 109.47213 * 300.00340 * 3 2 1 34 34 H 1.09006 * 109.47159 * 59.99930 * 3 2 1 35 35 H 1.09000 * 109.46709 * 304.99775 * 4 2 1 36 36 H 1.08996 * 109.46933 * 184.99519 * 4 2 1 37 37 H 1.08006 * 119.38522 * 0.02562 * 6 5 4 38 38 H 1.07997 * 119.93536 * 180.02562 * 7 6 5 39 39 H 1.08005 * 120.52326 * 180.24301 * 8 7 6 40 40 H 1.08997 * 110.37045 * 37.06878 * 13 12 10 41 41 H 1.09003 * 110.37009 * 274.74445 * 13 12 10 42 42 H 1.09001 * 111.00223 * 278.93342 * 14 13 12 43 43 H 1.08996 * 111.03930 * 155.10207 * 14 13 12 44 44 H 0.96698 * 113.99938 * 180.02562 * 16 15 14 45 45 H 0.97002 * 119.99980 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.88271 * 61.60640 * 25 12 10 47 47 H 1.09008 * 109.88222 * 300.44086 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 0.4689 -2.5216 1.7218 7 6 0.0745 -3.8201 1.6877 8 6 0.8894 -4.7839 1.0941 9 6 2.1110 -4.3923 0.5502 10 6 3.0003 -5.3796 -0.0804 11 8 3.9574 -5.8144 0.5316 12 7 2.7548 -5.8026 -1.3363 13 6 3.6162 -6.7036 -2.1233 14 6 2.6663 -7.3575 -3.1576 15 6 1.7173 -6.1782 -3.4980 16 8 2.3037 -5.3258 -4.4838 17 6 0.3787 -6.6887 -3.9656 18 1 0.2094 -7.7510 -4.0611 19 6 -0.6297 -5.7996 -4.2714 20 7 -0.4233 -4.5059 -4.1555 21 14 -2.2891 -6.4324 -4.8503 22 1 -2.2643 -7.9165 -4.8963 23 1 -3.3461 -5.9835 -3.9088 24 1 -2.5760 -5.9005 -6.2068 25 6 1.5840 -5.4411 -2.1487 26 6 2.4789 -3.0232 0.6094 27 8 3.5398 -2.6543 0.1364 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6055 -0.2618 2.1369 36 1 3.1264 -0.6444 1.2950 37 1 -0.1732 -1.7847 2.1813 38 1 -0.8739 -4.1068 2.1174 39 1 0.5801 -5.8182 1.0599 40 1 4.0577 -7.4645 -1.4797 41 1 4.3961 -6.1357 -2.6306 42 1 2.1154 -8.1863 -2.7128 43 1 3.2149 -7.6850 -4.0405 44 1 1.7505 -4.5724 -4.7316 45 1 -1.1327 -3.8804 -4.3710 46 1 1.5663 -4.3640 -2.3148 47 1 0.6707 -5.7554 -1.6433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823528708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:50 Heat of formation + Delta-G solvation = -113.642236 kcal Electronic energy + Delta-G solvation = -30462.401684 eV Core-core repulsion = 26416.445963 eV Total energy + Delta-G solvation = -4045.955720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.63102 -40.90076 -39.01510 -38.18348 -37.28689 -36.03161 -34.45607 -34.19495 -32.18804 -30.87789 -29.63399 -28.23221 -27.94462 -27.05976 -25.97036 -23.98861 -23.80123 -21.53722 -21.39236 -20.83197 -19.21443 -18.63670 -18.54788 -18.03589 -17.67191 -17.11839 -16.80215 -16.57197 -16.29305 -15.92723 -15.73548 -15.49933 -14.94150 -14.84616 -14.73720 -14.60781 -14.08069 -13.89214 -13.63547 -13.49158 -13.37603 -13.34976 -13.17282 -13.07581 -12.84232 -12.78279 -12.57883 -12.34160 -12.30991 -12.24465 -12.12574 -11.96444 -11.73404 -11.40278 -11.20779 -11.06507 -10.93990 -10.64289 -10.28598 -9.65746 -9.02753 -8.24004 -6.41142 -0.39913 0.82634 1.21490 1.43529 1.48397 1.58777 1.72588 2.09686 2.40723 2.53560 3.00751 3.47259 3.58360 3.70546 3.76324 3.82540 3.88003 3.96498 4.01730 4.10146 4.16544 4.21637 4.26177 4.37254 4.53292 4.56778 4.63690 4.70338 4.76882 4.80736 4.91335 4.94237 4.95279 4.97151 5.04853 5.18774 5.21232 5.25285 5.27906 5.33012 5.36285 5.44146 5.54727 5.74557 5.94339 6.02583 6.51641 6.65437 6.86354 7.03655 7.28968 7.36576 8.82392 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010298 B = 0.004634 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.285965 B = 6040.849630 C = 7224.177490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.091 3.909 5 N -0.482 5.482 6 C 0.168 3.832 7 C -0.234 4.234 8 C 0.043 3.957 9 C -0.308 4.308 10 C 0.592 3.408 11 O -0.590 6.590 12 N -0.608 5.608 13 C 0.107 3.893 14 C -0.108 4.108 15 C 0.231 3.769 16 O -0.594 6.594 17 C -0.555 4.555 18 H 0.068 0.932 19 C 0.033 3.967 20 N -0.913 5.913 21 Si 0.965 3.035 22 H -0.269 1.269 23 H -0.273 1.273 24 H -0.284 1.284 25 C 0.127 3.873 26 C 0.522 3.478 27 O -0.600 6.600 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.027 0.973 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.149 0.851 36 H 0.077 0.923 37 H 0.227 0.773 38 H 0.199 0.801 39 H 0.147 0.853 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.377 0.623 45 H 0.272 0.728 46 H 0.031 0.969 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 9.977 14.195 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.195 4.195 4 C -0.029 4.029 5 N -0.189 5.189 6 C 0.039 3.961 7 C -0.256 4.256 8 C 0.020 3.980 9 C -0.315 4.315 10 C 0.382 3.618 11 O -0.472 6.472 12 N -0.340 5.340 13 C -0.015 4.015 14 C -0.146 4.146 15 C 0.191 3.809 16 O -0.403 6.403 17 C -0.593 4.593 18 H 0.086 0.914 19 C -0.168 4.168 20 N -0.552 5.552 21 Si 0.790 3.210 22 H -0.193 1.193 23 H -0.199 1.199 24 H -0.209 1.209 25 C 0.004 3.996 26 C 0.325 3.675 27 O -0.486 6.486 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.167 0.833 36 H 0.095 0.905 37 H 0.244 0.756 38 H 0.216 0.784 39 H 0.165 0.835 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.227 0.773 45 H 0.081 0.919 46 H 0.049 0.951 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.962 9.810 14.294 18.333 hybrid contribution -0.633 0.007 -1.033 1.212 sum -6.596 9.817 13.261 17.769 Atomic orbital electron populations 1.21939 0.92748 1.01921 1.03921 1.21427 0.98027 0.97540 0.96240 1.21715 1.00744 0.93345 1.03673 1.22457 1.02638 0.76350 1.01489 1.45504 1.17161 1.10834 1.45364 1.23138 0.84715 0.98741 0.89475 1.21108 1.04266 0.90975 1.09244 1.22166 0.88126 1.02006 0.85748 1.20609 1.01249 0.93686 1.15981 1.17690 0.83778 0.80365 0.79999 1.90664 1.32278 1.60127 1.64115 1.48790 1.24905 1.47250 1.13033 1.22254 0.93553 0.92604 0.93106 1.22755 0.96688 0.97330 0.97794 1.19765 0.91255 0.86508 0.83382 1.86118 1.49724 1.42905 1.61542 1.21769 0.96748 0.94108 1.46708 0.91394 1.25749 1.02214 0.94950 0.93882 1.69773 1.35154 1.01960 1.48335 0.85401 0.79055 0.78698 0.77831 1.19330 1.19856 1.20949 1.22602 0.85526 0.98193 0.93282 1.16747 0.84441 0.86169 0.80148 1.90870 1.25564 1.80941 1.51234 0.88393 0.92667 0.93504 0.95390 0.93405 0.92067 0.89219 0.83298 0.90488 0.75631 0.78421 0.83531 0.90126 0.93047 0.89023 0.89549 0.77274 0.91883 0.95055 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.63 71.98 0.62 -1.63 16 2 C -0.11 -2.30 3.12 -10.79 -0.03 -2.34 16 3 C -0.14 -2.11 9.19 71.98 0.66 -1.45 16 4 C 0.09 1.73 4.83 86.38 0.42 2.15 16 5 N -0.48 -12.14 2.46 -649.68 -1.60 -13.75 16 6 C 0.17 2.57 8.20 83.56 0.69 3.26 16 7 C -0.23 -4.09 9.99 21.99 0.22 -3.87 16 8 C 0.04 1.22 9.91 22.83 0.23 1.45 16 9 C -0.31 -12.34 4.85 -19.79 -0.10 -12.44 16 10 C 0.59 28.47 6.84 86.56 0.59 29.06 16 11 O -0.59 -31.41 17.34 -4.16 -0.07 -31.48 16 12 N -0.61 -28.84 3.33 -816.06 -2.71 -31.55 16 13 C 0.11 4.72 6.92 86.86 0.60 5.32 16 14 C -0.11 -4.62 6.22 31.98 0.20 -4.42 16 15 C 0.23 11.49 0.86 -10.35 -0.01 11.48 16 16 O -0.59 -31.89 13.09 -148.98 -1.95 -33.84 16 17 C -0.56 -28.28 8.12 25.60 0.21 -28.07 16 18 H 0.07 3.39 7.77 -2.91 -0.02 3.37 16 19 C 0.03 1.64 5.26 84.65 0.45 2.09 16 20 N -0.91 -46.54 10.97 21.45 0.24 -46.31 16 21 Si 0.96 39.33 29.54 68.60 2.03 41.36 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 25 C 0.13 6.16 5.00 86.73 0.43 6.59 16 26 C 0.52 20.61 7.44 85.16 0.63 21.24 16 27 O -0.60 -29.57 16.11 -4.94 -0.08 -29.65 16 28 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.82 6.34 -2.39 -0.02 0.80 16 31 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 34 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.15 1.14 8.00 -2.39 -0.02 1.12 16 36 H 0.08 1.90 7.38 -2.39 -0.02 1.88 16 37 H 0.23 0.56 7.88 -2.91 -0.02 0.54 16 38 H 0.20 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 40 H 0.08 3.29 7.99 -2.39 -0.02 3.27 16 41 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.09 3.62 8.04 -2.39 -0.02 3.60 16 43 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 44 H 0.38 20.70 7.17 -74.06 -0.53 20.17 16 45 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 46 H 0.03 1.69 8.01 -2.39 -0.02 1.67 16 47 H 0.06 3.02 7.82 -2.38 -0.02 3.00 16 Total: -1.00 -81.93 385.51 2.09 -79.84 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: 0.44 Total: 36.95 kcal Atomic # 6 Polarization: 22.63 SS G_CDS: 5.81 Total: 28.43 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -4.08 Total: -91.61 kcal Atomic # 8 Polarization: -92.86 SS G_CDS: -2.10 Total: -94.97 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -81.93 2.09 -79.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.806 kcal (2) G-P(sol) polarization free energy of solvation -81.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds