Wall clock time and date at job start Tue Mar 31 2020 17:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46835 * 2 1 4 4 C 1.52999 * 109.46995 * 240.00033 * 2 1 3 5 5 O 1.45204 * 109.47558 * 119.99790 * 2 1 3 6 6 C 1.34641 * 116.99447 * 60.00131 * 5 2 1 7 7 O 1.21508 * 120.00081 * 359.97438 * 6 5 2 8 8 N 1.34771 * 119.99389 * 180.02562 * 6 5 2 9 9 C 1.46502 * 120.00104 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47545 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47143 * 59.99451 * 9 8 6 12 12 C 1.50706 * 109.46503 * 65.00340 * 11 9 8 13 13 C 1.38238 * 119.99727 * 90.00317 * 12 11 9 14 14 C 1.38234 * 119.99693 * 180.02562 * 13 12 11 15 15 C 1.38234 * 120.00240 * 359.97438 * 14 13 12 16 16 C 1.38233 * 120.00037 * 0.26327 * 15 14 13 17 17 C 1.38234 * 120.00207 * 270.01808 * 12 11 9 18 18 C 1.50706 * 109.46892 * 300.00338 * 9 8 6 19 19 O 1.21297 * 120.00136 * 19.99325 * 18 9 8 20 20 N 1.34780 * 120.00005 * 199.99982 * 18 9 8 21 21 C 1.37094 * 120.00166 * 179.97438 * 20 18 9 22 22 H 1.08005 * 119.99819 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00082 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00046 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99963 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47147 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46986 * 119.99874 * 25 23 21 28 28 H 1.48502 * 109.47461 * 240.00199 * 25 23 21 29 29 H 1.09002 * 109.47414 * 299.99531 * 1 2 3 30 30 H 1.08993 * 109.47857 * 59.99941 * 1 2 3 31 31 H 1.09000 * 109.46892 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47364 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47101 * 299.99822 * 3 2 1 34 34 H 1.08998 * 109.47434 * 60.00215 * 3 2 1 35 35 H 1.08997 * 109.47467 * 299.99916 * 4 2 1 36 36 H 1.09003 * 109.47368 * 59.99917 * 4 2 1 37 37 H 1.09003 * 109.47169 * 179.97438 * 4 2 1 38 38 H 0.96999 * 120.00312 * 359.97438 * 8 6 5 39 39 H 1.09000 * 109.47324 * 305.00929 * 11 9 8 40 40 H 1.08993 * 109.47443 * 185.00133 * 11 9 8 41 41 H 1.07997 * 119.99846 * 359.97438 * 13 12 11 42 42 H 1.07999 * 119.99751 * 179.97438 * 14 13 12 43 43 H 1.08002 * 119.99744 * 179.97438 * 15 14 13 44 44 H 1.07998 * 120.00395 * 179.72811 * 16 15 14 45 45 H 1.07999 * 120.00008 * 0.02562 * 17 12 11 46 46 H 0.96995 * 119.99744 * 359.97438 * 20 18 9 47 47 H 0.96997 * 120.00002 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0673 -2.6653 2.4171 9 6 1.6743 -4.0668 2.5831 10 1 2.1010 -4.4569 3.5071 11 6 2.1897 -4.8850 1.3974 12 6 3.6967 -4.8897 1.4076 13 6 4.3801 -5.8788 2.0899 14 6 5.7624 -5.8828 2.0998 15 6 6.4613 -4.8980 1.4269 16 6 5.7779 -3.9062 0.7488 17 6 4.3956 -3.9048 0.7351 18 6 0.1716 -4.1632 2.6445 19 8 -0.5123 -3.2615 2.2078 20 7 -0.4125 -5.2511 3.1846 21 6 -1.7795 -5.3386 3.2409 22 1 -2.3884 -4.5354 2.8528 23 6 -2.3816 -6.4604 3.7973 24 7 -1.6407 -7.4374 4.2699 25 14 -4.2442 -6.5792 3.8746 26 1 -4.8433 -5.3570 3.2806 27 1 -4.6962 -7.7715 3.1134 28 1 -4.6740 -6.7037 5.2906 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1299 -0.7209 -1.2495 38 1 2.6270 -2.2364 3.0833 39 1 1.8341 -4.4410 0.4676 40 1 1.8226 -5.9083 1.4751 41 1 3.8341 -6.6479 2.6159 42 1 6.2964 -6.6553 2.6332 43 1 7.5413 -4.9010 1.4350 44 1 6.3238 -3.1343 0.2267 45 1 3.8616 -3.1316 0.2026 46 1 0.1344 -5.9722 3.5335 47 1 -2.0611 -8.2207 4.6580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013676609.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:07 Heat of formation + Delta-G solvation = -94.137770 kcal Electronic energy + Delta-G solvation = -30209.472772 eV Core-core repulsion = 26164.362829 eV Total energy + Delta-G solvation = -4045.109943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.53715 -39.28128 -38.34707 -36.61172 -34.57170 -33.87670 -33.74633 -32.10055 -31.15176 -30.79899 -28.60699 -27.32338 -27.15102 -25.31435 -23.98136 -22.47332 -22.07389 -20.84130 -19.92233 -18.88839 -18.06363 -17.88830 -16.70412 -16.13275 -15.94621 -15.54396 -15.34276 -14.95737 -14.63983 -14.45415 -14.26501 -13.96414 -13.75026 -13.55009 -13.33962 -13.18436 -13.09154 -12.54666 -12.41591 -12.26075 -12.09130 -11.79647 -11.74037 -11.58876 -11.52997 -11.42316 -11.23899 -11.08169 -10.98086 -10.85640 -10.74760 -10.32396 -10.20641 -10.00814 -9.50977 -9.37474 -9.15607 -8.84269 -8.64868 -7.96836 -7.89929 -6.39066 -3.78878 1.43134 1.47850 2.55148 3.18134 3.28761 3.36102 3.50339 3.79296 4.00300 4.18581 4.45933 4.80498 4.87796 4.90341 4.95990 5.02918 5.06942 5.13461 5.23969 5.27144 5.41103 5.51316 5.57903 5.60481 5.61314 5.65152 5.76487 5.82827 5.86732 5.90584 6.03510 6.04681 6.09892 6.16485 6.25502 6.41748 6.45814 6.55122 6.56742 6.65013 6.78302 6.86403 6.92085 7.09688 7.58421 7.93129 8.07868 8.63467 9.00798 9.22217 9.56066 10.08637 10.78678 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008929 B = 0.004543 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.104260 B = 6161.724189 C = 8906.764993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.140 3.860 3 C -0.139 4.139 4 C -0.182 4.182 5 O -0.375 6.375 6 C 0.655 3.345 7 O -0.531 6.531 8 N -0.695 5.695 9 C 0.168 3.832 10 H 0.101 0.899 11 C -0.099 4.099 12 C -0.068 4.068 13 C -0.118 4.118 14 C -0.120 4.120 15 C -0.131 4.131 16 C -0.122 4.122 17 C -0.107 4.107 18 C 0.433 3.567 19 O -0.558 6.558 20 N -0.563 5.563 21 C -0.294 4.294 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.927 3.073 26 H -0.269 1.269 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.401 0.599 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.391 0.609 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.425 8.678 -5.548 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.103 3.897 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.291 6.291 6 C 0.408 3.592 7 O -0.416 6.416 8 N -0.353 5.353 9 C 0.060 3.940 10 H 0.119 0.881 11 C -0.137 4.137 12 C -0.068 4.068 13 C -0.136 4.136 14 C -0.138 4.138 15 C -0.149 4.149 16 C -0.140 4.140 17 C -0.125 4.125 18 C 0.217 3.783 19 O -0.440 6.440 20 N -0.201 5.201 21 C -0.423 4.423 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.754 3.246 26 H -0.193 1.193 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.235 0.765 39 H 0.120 0.880 40 H 0.106 0.894 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.224 0.776 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.500 8.922 -6.249 18.135 hybrid contribution -0.352 -0.404 0.653 0.845 sum 14.147 8.518 -5.595 17.436 Atomic orbital electron populations 1.22500 0.93830 1.06073 1.01613 1.21898 0.94544 0.90998 0.82270 1.21840 1.01767 0.93226 1.02783 1.22513 1.00948 1.03910 0.96558 1.86233 1.71965 1.24604 1.46264 1.17841 0.78467 0.79993 0.82862 1.90891 1.38006 1.69624 1.43098 1.44161 1.55590 1.11676 1.23896 1.20693 0.95162 0.79383 0.98808 0.88108 1.21078 0.90358 1.01384 1.00929 1.19941 0.95643 0.94648 0.96545 1.21171 0.94263 0.98723 0.99421 1.21108 0.94298 0.98760 0.99674 1.21071 0.99494 0.95532 0.98771 1.21095 0.94339 0.98710 0.99828 1.21044 0.93901 0.98241 0.99332 1.19960 0.88556 0.85080 0.84727 1.90585 1.63848 1.39432 1.50113 1.41822 1.07541 1.17420 1.53298 1.19721 0.81603 1.04285 1.36711 0.87993 1.25214 1.00358 0.95319 0.96996 1.69608 1.35891 1.08193 1.40708 0.85836 0.82564 0.78373 0.77789 1.19303 1.20783 1.20823 0.92459 0.91997 0.88293 0.91859 0.90565 0.91676 0.89141 0.91611 0.92637 0.76527 0.87975 0.89374 0.85712 0.86323 0.86603 0.86575 0.86718 0.77605 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 8.37 37.15 0.31 -2.48 16 2 C 0.14 1.93 1.13 -90.62 -0.10 1.83 16 3 C -0.14 -1.43 8.85 37.16 0.33 -1.10 16 4 C -0.18 -2.34 8.37 37.16 0.31 -2.03 16 5 O -0.37 -5.99 9.94 -40.33 -0.40 -6.40 16 6 C 0.66 11.80 6.12 54.05 0.33 12.13 16 7 O -0.53 -11.00 7.73 -27.10 -0.21 -11.21 16 8 N -0.70 -11.29 4.58 -59.86 -0.27 -11.56 16 9 C 0.17 2.91 3.00 -69.08 -0.21 2.70 16 10 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 11 C -0.10 -1.61 4.68 -27.88 -0.13 -1.74 16 12 C -0.07 -0.94 4.95 -104.62 -0.52 -1.46 16 13 C -0.12 -1.47 9.70 -39.58 -0.38 -1.86 16 14 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 15 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 16 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 17 C -0.11 -1.42 9.31 -39.58 -0.37 -1.79 16 18 C 0.43 10.08 6.77 -10.98 -0.07 10.01 16 19 O -0.56 -15.13 13.25 -17.96 -0.24 -15.37 16 20 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 21 C -0.29 -8.15 9.68 -14.94 -0.14 -8.29 16 22 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 25 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.92 5.88 -51.93 -0.31 1.62 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.42 5.88 -51.93 -0.31 1.11 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.40 5.40 8.94 -40.82 -0.36 5.04 16 39 H 0.10 1.90 5.99 -51.93 -0.31 1.59 16 40 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 41 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.11 1.61 7.35 -52.49 -0.39 1.22 16 46 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 47 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -32.54 384.15 -8.63 -41.16 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -7.00 Total: 17.91 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.94 Total: 1.11 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.39 Total: -49.15 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.85 Total: -32.98 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.54 -8.63 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013676609.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.976 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds