Wall clock time and date at job start Tue Mar 31 2020 17:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46835 * 2 1 4 4 C 1.52999 * 109.46995 * 240.00033 * 2 1 3 5 5 O 1.45204 * 109.47558 * 119.99790 * 2 1 3 6 6 C 1.34641 * 116.99447 * 60.00131 * 5 2 1 7 7 O 1.21508 * 120.00081 * 359.97438 * 6 5 2 8 8 N 1.34771 * 119.99389 * 180.02562 * 6 5 2 9 9 C 1.46502 * 120.00104 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47545 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47143 * 59.99451 * 9 8 6 12 12 C 1.50706 * 109.46503 * 65.00340 * 11 9 8 13 13 C 1.38238 * 119.99727 * 90.00317 * 12 11 9 14 14 C 1.38234 * 119.99693 * 180.02562 * 13 12 11 15 15 C 1.38234 * 120.00240 * 359.97438 * 14 13 12 16 16 C 1.38233 * 120.00037 * 0.26327 * 15 14 13 17 17 C 1.38234 * 120.00207 * 270.01808 * 12 11 9 18 18 C 1.50706 * 109.46892 * 300.00338 * 9 8 6 19 19 O 1.21297 * 120.00136 * 19.99325 * 18 9 8 20 20 N 1.34780 * 120.00005 * 199.99982 * 18 9 8 21 21 C 1.37094 * 120.00166 * 179.97438 * 20 18 9 22 22 H 1.08005 * 119.99819 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00082 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00046 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99963 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47147 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46986 * 119.99874 * 25 23 21 28 28 H 1.48502 * 109.47461 * 240.00199 * 25 23 21 29 29 H 1.09002 * 109.47414 * 299.99531 * 1 2 3 30 30 H 1.08993 * 109.47857 * 59.99941 * 1 2 3 31 31 H 1.09000 * 109.46892 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47364 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47101 * 299.99822 * 3 2 1 34 34 H 1.08998 * 109.47434 * 60.00215 * 3 2 1 35 35 H 1.08997 * 109.47467 * 299.99916 * 4 2 1 36 36 H 1.09003 * 109.47368 * 59.99917 * 4 2 1 37 37 H 1.09003 * 109.47169 * 179.97438 * 4 2 1 38 38 H 0.96999 * 120.00312 * 359.97438 * 8 6 5 39 39 H 1.09000 * 109.47324 * 305.00929 * 11 9 8 40 40 H 1.08993 * 109.47443 * 185.00133 * 11 9 8 41 41 H 1.07997 * 119.99846 * 359.97438 * 13 12 11 42 42 H 1.07999 * 119.99751 * 179.97438 * 14 13 12 43 43 H 1.08002 * 119.99744 * 179.97438 * 15 14 13 44 44 H 1.07998 * 120.00395 * 179.72811 * 16 15 14 45 45 H 1.07999 * 120.00008 * 0.02562 * 17 12 11 46 46 H 0.96995 * 119.99744 * 359.97438 * 20 18 9 47 47 H 0.96997 * 120.00002 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0673 -2.6653 2.4171 9 6 1.6743 -4.0668 2.5831 10 1 2.1010 -4.4569 3.5071 11 6 2.1897 -4.8850 1.3974 12 6 3.6967 -4.8897 1.4076 13 6 4.3801 -5.8788 2.0899 14 6 5.7624 -5.8828 2.0998 15 6 6.4613 -4.8980 1.4269 16 6 5.7779 -3.9062 0.7488 17 6 4.3956 -3.9048 0.7351 18 6 0.1716 -4.1632 2.6445 19 8 -0.5123 -3.2615 2.2078 20 7 -0.4125 -5.2511 3.1846 21 6 -1.7795 -5.3386 3.2409 22 1 -2.3884 -4.5354 2.8528 23 6 -2.3816 -6.4604 3.7973 24 7 -1.6407 -7.4374 4.2699 25 14 -4.2442 -6.5792 3.8746 26 1 -4.8433 -5.3570 3.2806 27 1 -4.6962 -7.7715 3.1134 28 1 -4.6740 -6.7037 5.2906 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1299 -0.7209 -1.2495 38 1 2.6270 -2.2364 3.0833 39 1 1.8341 -4.4410 0.4676 40 1 1.8226 -5.9083 1.4751 41 1 3.8341 -6.6479 2.6159 42 1 6.2964 -6.6553 2.6332 43 1 7.5413 -4.9010 1.4350 44 1 6.3238 -3.1343 0.2267 45 1 3.8616 -3.1316 0.2026 46 1 0.1344 -5.9722 3.5335 47 1 -2.0611 -8.2207 4.6580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013676609.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:06 Heat of formation + Delta-G solvation = -114.776782 kcal Electronic energy + Delta-G solvation = -30210.367747 eV Core-core repulsion = 26164.362829 eV Total energy + Delta-G solvation = -4046.004918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.91017 -40.50039 -39.78211 -38.07602 -36.07016 -35.78850 -34.99386 -33.41616 -33.01926 -31.71041 -29.93009 -28.32379 -28.24129 -27.10931 -25.47329 -23.45988 -23.36643 -21.96985 -21.30204 -20.57700 -19.88172 -19.39265 -17.83923 -17.53180 -17.26509 -17.02752 -16.62317 -16.38595 -15.99527 -15.80298 -15.53182 -15.37971 -15.22542 -15.20198 -14.56277 -14.39305 -14.19373 -13.80044 -13.60472 -13.50577 -13.25760 -13.19858 -13.01706 -12.93968 -12.80164 -12.79521 -12.70530 -12.42619 -12.40063 -12.15043 -12.10465 -11.88528 -11.78250 -11.48929 -11.23328 -10.90354 -10.63898 -9.98037 -9.88610 -9.74627 -9.46165 -8.45012 -5.92465 0.48402 0.56397 1.25073 1.36391 1.40548 1.54135 2.04256 2.12735 2.31115 2.90246 3.09047 3.20944 3.36213 3.82865 3.85648 3.87864 3.98278 4.00731 4.12680 4.16234 4.23673 4.35121 4.44444 4.50034 4.58752 4.63702 4.70706 4.78033 4.78967 4.84767 4.86795 4.92524 5.00645 5.13127 5.20877 5.24057 5.31286 5.35845 5.42628 5.50563 5.64236 5.66775 5.68325 5.81971 6.01118 6.18279 6.60716 6.61947 7.15147 7.56105 7.66501 8.15138 8.72248 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008929 B = 0.004543 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.104260 B = 6161.724189 C = 8906.764993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.129 3.871 3 C -0.131 4.131 4 C -0.175 4.175 5 O -0.374 6.374 6 C 0.652 3.348 7 O -0.561 6.561 8 N -0.687 5.687 9 C 0.181 3.819 10 H 0.132 0.868 11 C -0.086 4.086 12 C -0.081 4.081 13 C -0.125 4.125 14 C -0.119 4.119 15 C -0.124 4.124 16 C -0.123 4.123 17 C -0.118 4.118 18 C 0.430 3.570 19 O -0.601 6.601 20 N -0.569 5.569 21 C -0.328 4.328 22 H 0.072 0.928 23 C -0.009 4.009 24 N -0.917 5.917 25 Si 0.987 3.013 26 H -0.279 1.279 27 H -0.271 1.271 28 H -0.269 1.269 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.416 0.584 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.131 0.869 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.137 0.863 45 H 0.099 0.901 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.928 9.020 -5.286 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.092 3.908 3 C -0.188 4.188 4 C -0.233 4.233 5 O -0.290 6.290 6 C 0.405 3.595 7 O -0.448 6.448 8 N -0.346 5.346 9 C 0.073 3.927 10 H 0.150 0.850 11 C -0.124 4.124 12 C -0.081 4.081 13 C -0.143 4.143 14 C -0.137 4.137 15 C -0.142 4.142 16 C -0.141 4.141 17 C -0.136 4.136 18 C 0.216 3.784 19 O -0.485 6.485 20 N -0.208 5.208 21 C -0.457 4.457 22 H 0.090 0.910 23 C -0.209 4.209 24 N -0.558 5.558 25 Si 0.812 3.188 26 H -0.204 1.204 27 H -0.196 1.196 28 H -0.194 1.194 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.252 0.748 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.148 0.852 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.155 0.845 45 H 0.117 0.883 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.047 9.265 -5.963 20.297 hybrid contribution -1.085 -0.477 0.515 1.292 sum 15.962 8.788 -5.448 19.018 Atomic orbital electron populations 1.22428 0.95434 1.03143 1.02561 1.22302 0.93519 0.93045 0.81920 1.21853 1.02617 0.90265 1.04058 1.22433 1.01755 1.01973 0.97100 1.86244 1.71790 1.23443 1.47490 1.18043 0.78100 0.80572 0.82771 1.90896 1.39276 1.70428 1.44237 1.44065 1.55379 1.11282 1.23900 1.20573 0.90739 0.80556 1.00876 0.84996 1.20829 0.92671 1.00188 0.98742 1.19674 0.93676 0.96196 0.98571 1.21297 0.95276 0.98385 0.99350 1.21433 0.93611 0.99353 0.99319 1.21458 1.01077 0.94441 0.97234 1.21345 0.93431 0.99525 0.99765 1.20989 0.94949 0.97964 0.99722 1.21010 0.91093 0.83707 0.82636 1.90561 1.65804 1.40776 1.51313 1.41834 1.06807 1.18187 1.53931 1.19588 0.82978 1.04483 1.38690 0.91008 1.25912 1.04393 0.94532 0.96030 1.69655 1.37389 1.08375 1.40372 0.84958 0.77497 0.78036 0.78350 1.20357 1.19632 1.19361 0.93277 0.89242 0.93022 0.90480 0.88003 0.91692 0.92614 0.89296 0.91187 0.74780 0.90989 0.90053 0.85150 0.83749 0.83577 0.84512 0.88317 0.76955 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.63 8.37 71.98 0.60 -5.03 16 2 C 0.13 3.51 1.13 -10.80 -0.01 3.50 16 3 C -0.13 -2.39 8.85 71.98 0.64 -1.75 16 4 C -0.18 -4.47 8.37 71.98 0.60 -3.86 16 5 O -0.37 -12.13 9.94 -55.51 -0.55 -12.68 16 6 C 0.65 24.50 6.12 129.79 0.79 25.30 16 7 O -0.56 -24.96 7.73 27.29 0.21 -24.75 16 8 N -0.69 -22.84 4.58 -573.72 -2.63 -25.47 16 9 C 0.18 6.46 3.00 44.25 0.13 6.59 16 10 H 0.13 3.88 8.14 -2.39 -0.02 3.86 16 11 C -0.09 -2.90 4.68 29.85 0.14 -2.76 16 12 C -0.08 -2.23 4.95 -19.86 -0.10 -2.33 16 13 C -0.13 -2.93 9.70 22.27 0.22 -2.71 16 14 C -0.12 -2.27 10.05 22.27 0.22 -2.04 16 15 C -0.12 -2.21 10.05 22.27 0.22 -1.98 16 16 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 17 C -0.12 -3.07 9.31 22.27 0.21 -2.86 16 18 C 0.43 21.01 6.77 87.66 0.59 21.61 16 19 O -0.60 -34.63 13.25 19.39 0.26 -34.37 16 20 N -0.57 -29.48 5.29 -306.97 -1.62 -31.10 16 21 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 22 H 0.07 4.52 7.16 -2.91 -0.02 4.50 16 23 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 24 N -0.92 -49.34 13.05 21.66 0.28 -49.06 16 25 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.05 2.15 5.88 -2.39 -0.01 2.14 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.84 5.88 -2.39 -0.01 1.83 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.42 11.10 8.94 -92.71 -0.83 10.27 16 39 H 0.07 2.89 5.99 -2.39 -0.01 2.88 16 40 H 0.08 2.80 8.08 -2.39 -0.02 2.78 16 41 H 0.13 2.84 8.06 -2.91 -0.02 2.81 16 42 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 45 H 0.10 2.85 7.35 -2.91 -0.02 2.83 16 46 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 47 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -74.79 384.15 3.18 -71.62 By element: Atomic # 1 Polarization: 49.26 SS G_CDS: -0.56 Total: 48.70 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 5.77 Total: 11.21 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -3.97 Total: -105.63 kcal Atomic # 8 Polarization: -71.71 SS G_CDS: -0.08 Total: -71.80 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -74.79 3.18 -71.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013676609.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.161 kcal (2) G-P(sol) polarization free energy of solvation -74.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds