Wall clock time and date at job start Tue Mar 31 2020 18:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46809 * 2 1 4 4 N 1.46506 * 109.46782 * 184.46404 * 3 2 1 5 5 C 1.37100 * 120.00111 * 265.73143 * 4 3 2 6 6 H 1.07999 * 120.00017 * 145.38306 * 5 4 3 7 7 C 1.38945 * 119.99730 * 325.37424 * 5 4 3 8 8 N 1.31415 * 119.99917 * 156.82948 * 7 5 4 9 9 Si 1.86800 * 120.00561 * 336.83353 * 7 5 4 10 10 H 1.48509 * 109.47211 * 95.21319 * 9 7 5 11 11 H 1.48492 * 109.47390 * 215.21868 * 9 7 5 12 12 H 1.48507 * 109.46758 * 335.21871 * 9 7 5 13 13 C 1.34778 * 120.00012 * 85.72899 * 4 3 2 14 14 O 1.21296 * 119.99769 * 5.37193 * 13 4 3 15 15 C 1.50694 * 119.99948 * 185.36963 * 13 4 3 16 16 H 1.08994 * 109.47342 * 46.10974 * 15 13 4 17 17 C 1.52999 * 109.47285 * 286.10511 * 15 13 4 18 18 N 1.46507 * 109.46954 * 166.10522 * 15 13 4 19 19 C 1.34772 * 119.99799 * 204.99713 * 18 15 13 20 20 O 1.21277 * 120.00547 * 0.02562 * 19 18 15 21 21 C 1.50706 * 119.99735 * 179.97438 * 19 18 15 22 22 O 1.42901 * 109.47189 * 179.97438 * 21 19 18 23 23 C 1.35901 * 117.00021 * 180.02562 * 22 21 19 24 24 C 1.38733 * 120.05434 * 180.02562 * 23 22 21 25 25 C 1.38140 * 119.94209 * 179.97438 * 24 23 22 26 26 C 1.38266 * 120.05676 * 359.97438 * 25 24 23 27 27 C 1.38270 * 120.11233 * 0.04322 * 26 25 24 28 28 C 1.38141 * 120.05551 * 359.95991 * 27 26 25 29 29 H 1.09000 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47494 * 300.00040 * 1 2 3 31 31 H 1.09007 * 109.46869 * 60.00310 * 1 2 3 32 32 H 1.08994 * 109.46752 * 239.99996 * 2 1 3 33 33 H 1.08997 * 109.46952 * 120.00193 * 2 1 3 34 34 H 1.08998 * 109.47073 * 64.47267 * 3 2 1 35 35 H 1.08999 * 109.47520 * 304.46111 * 3 2 1 36 36 H 0.97002 * 120.00464 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47365 * 172.95964 * 17 15 13 38 38 H 1.08998 * 109.47379 * 292.96439 * 17 15 13 39 39 H 1.09005 * 109.46772 * 52.96029 * 17 15 13 40 40 H 0.96999 * 119.99543 * 25.00303 * 18 15 13 41 41 H 1.09010 * 109.46804 * 60.00507 * 21 19 18 42 42 H 1.08997 * 109.47283 * 300.00535 * 21 19 18 43 43 H 1.07995 * 120.02684 * 359.70593 * 24 23 22 44 44 H 1.07999 * 119.97457 * 180.02562 * 25 24 23 45 45 H 1.08003 * 119.94515 * 180.02562 * 26 25 24 46 46 H 1.07994 * 119.97188 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.02767 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5010 1.4439 -0.1075 5 6 4.2717 1.5022 1.0249 6 1 5.2142 0.9764 1.0643 7 6 3.8401 2.2378 2.1218 8 7 4.2940 1.9552 3.3222 9 14 2.6148 3.6286 1.8902 10 1 1.2405 3.1245 2.1408 11 1 2.9222 4.7234 2.8450 12 1 2.7073 4.1435 0.5003 13 6 4.0876 1.3878 -1.3197 14 8 3.4095 1.4346 -2.3243 15 6 5.5859 1.2671 -1.4268 16 1 5.9390 0.5011 -0.7365 17 6 6.2321 2.6084 -1.0744 18 7 5.9491 0.8950 -2.7965 19 6 7.1093 0.2519 -3.0349 20 8 7.8524 -0.0192 -2.1156 21 6 7.4826 -0.1314 -4.4437 22 8 8.7474 -0.7965 -4.4372 23 6 9.2329 -1.2106 -5.6370 24 6 10.4552 -1.8636 -5.7040 25 6 10.9463 -2.2840 -6.9248 26 6 10.2206 -2.0550 -8.0792 27 6 9.0024 -1.4040 -8.0152 28 6 8.5069 -0.9816 -6.7968 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.7435 1.9326 0.9273 35 1 1.6128 1.9789 -0.8473 36 1 3.9924 2.4685 4.0881 37 1 7.3147 2.4896 -1.0297 38 1 5.9786 3.3453 -1.8364 39 1 5.8634 2.9459 -0.1057 40 1 5.3546 1.1115 -3.5317 41 1 7.5476 0.7659 -5.0593 42 1 6.7232 -0.7981 -4.8523 43 1 11.0241 -2.0393 -4.8031 44 1 11.8975 -2.7928 -6.9775 45 1 10.6061 -2.3848 -9.0327 46 1 8.4377 -1.2260 -8.9183 47 1 7.5556 -0.4729 -6.7474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056484433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:58 Heat of formation + Delta-G solvation = -73.633262 kcal Electronic energy + Delta-G solvation = -28542.994443 eV Core-core repulsion = 24498.773642 eV Total energy + Delta-G solvation = -4044.220801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.51134 -39.71845 -38.71641 -37.33273 -35.66213 -34.40846 -33.10225 -31.88108 -31.39218 -30.78843 -30.01720 -27.84789 -26.14003 -25.17696 -23.47740 -22.81800 -22.23387 -21.25744 -20.16460 -19.26065 -18.56206 -17.91349 -16.87745 -16.42817 -16.33861 -16.05101 -15.76658 -15.41133 -14.93872 -14.57031 -14.49186 -14.27354 -14.05648 -13.92038 -13.66617 -13.56868 -12.97503 -12.89680 -12.72941 -12.67451 -12.47364 -12.05803 -11.83668 -11.72904 -11.59852 -11.46437 -11.27474 -11.11582 -11.04204 -11.00575 -10.86550 -10.51635 -10.16615 -9.83473 -9.68098 -9.30589 -9.24908 -8.95705 -8.60955 -8.42512 -7.97831 -6.60178 -4.17078 1.09568 1.21665 2.52091 2.71505 2.95071 3.13297 3.20282 3.49059 3.56069 3.66193 4.01230 4.26746 4.52438 4.64665 4.75938 4.80670 4.85741 4.91458 4.93335 5.13668 5.25166 5.40058 5.47103 5.53172 5.60759 5.76571 5.79830 5.83184 5.85098 5.96499 6.06898 6.15990 6.21888 6.27435 6.29018 6.32496 6.35400 6.39162 6.51418 6.65172 6.68227 6.79885 6.90062 7.17347 7.20930 7.72464 7.91933 8.10622 8.37904 8.77599 9.17238 9.47956 10.49543 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020230 B = 0.002387 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.729903 B =11725.232251 C =12420.034824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.102 3.898 4 N -0.451 5.451 5 C -0.354 4.354 6 H 0.110 0.890 7 C 0.071 3.929 8 N -0.848 5.848 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.261 1.261 13 C 0.473 3.527 14 O -0.601 6.601 15 C 0.146 3.854 16 H 0.110 0.890 17 C -0.154 4.154 18 N -0.706 5.706 19 C 0.514 3.486 20 O -0.519 6.519 21 C 0.043 3.957 22 O -0.287 6.287 23 C 0.132 3.868 24 C -0.150 4.150 25 C -0.081 4.081 26 C -0.163 4.163 27 C -0.080 4.080 28 C -0.212 4.212 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.277 0.723 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.407 0.593 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.133 0.867 44 H 0.129 0.871 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.869 -3.974 -17.101 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.021 4.021 4 N -0.170 5.170 5 C -0.481 4.481 6 H 0.128 0.872 7 C -0.138 4.138 8 N -0.482 5.482 9 Si 0.701 3.299 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.185 1.185 13 C 0.261 3.739 14 O -0.487 6.487 15 C 0.039 3.961 16 H 0.127 0.873 17 C -0.212 4.212 18 N -0.361 5.361 19 C 0.298 3.702 20 O -0.394 6.394 21 C -0.036 4.036 22 O -0.200 6.200 23 C 0.087 3.913 24 C -0.169 4.169 25 C -0.099 4.099 26 C -0.181 4.181 27 C -0.098 4.098 28 C -0.231 4.231 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.243 0.757 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.157 -4.122 -16.451 17.726 hybrid contribution -1.137 0.910 -0.308 1.488 sum 4.020 -3.212 -16.758 17.530 Atomic orbital electron populations 1.21707 0.96198 1.01181 1.01429 1.21762 0.94949 0.97689 1.02555 1.21695 0.82202 0.96939 1.01249 1.43680 1.04417 1.63501 1.05398 1.19135 1.06285 1.32433 0.90198 0.87212 1.25267 0.96965 0.96998 0.94563 1.69784 1.42765 1.37426 0.98246 0.87024 0.80891 0.82659 0.79342 1.20015 1.21367 1.18459 1.20153 0.89073 0.81079 0.83555 1.90516 1.65271 1.56737 1.36182 1.20569 0.93199 0.99670 0.82636 0.87258 1.22034 1.00549 0.94902 1.03745 1.45722 1.20959 1.58792 1.10620 1.19856 0.82001 0.78535 0.89818 1.90761 1.50219 1.53212 1.45165 1.22491 0.85797 0.98518 0.96802 1.86177 1.34960 1.71542 1.27273 1.19129 0.93586 0.94400 0.84234 1.20500 0.94930 1.02283 0.99142 1.20978 0.99415 0.97938 0.91577 1.21068 0.96015 1.02521 0.98517 1.20951 0.95599 0.96297 0.96992 1.21320 1.01946 1.07169 0.92677 0.92927 0.92970 0.92955 0.92043 0.91221 0.91335 0.91306 0.91255 0.92186 0.93137 0.88595 0.75713 0.88955 0.88897 0.84939 0.85356 0.85999 0.85790 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.91 37.16 0.37 -1.86 16 2 C -0.13 -2.44 6.23 -26.73 -0.17 -2.61 16 3 C 0.10 2.15 4.08 -4.04 -0.02 2.14 16 4 N -0.45 -10.28 2.23 -114.81 -0.26 -10.54 16 5 C -0.35 -8.70 7.54 -14.93 -0.11 -8.81 16 6 H 0.11 2.87 6.76 -52.49 -0.36 2.51 16 7 C 0.07 1.78 5.29 -17.47 -0.09 1.68 16 8 N -0.85 -22.46 13.96 55.50 0.77 -21.68 16 9 Si 0.87 19.50 24.97 -169.99 -4.25 15.26 16 10 H -0.27 -5.87 6.64 56.52 0.38 -5.49 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 13 C 0.47 10.27 6.94 -10.99 -0.08 10.19 16 14 O -0.60 -13.49 15.48 5.54 0.09 -13.40 16 15 C 0.15 2.85 2.20 -69.08 -0.15 2.70 16 16 H 0.11 2.35 6.51 -51.93 -0.34 2.01 16 17 C -0.15 -2.85 9.36 37.16 0.35 -2.50 16 18 N -0.71 -11.53 5.02 -54.93 -0.28 -11.80 16 19 C 0.51 8.37 7.87 -10.98 -0.09 8.28 16 20 O -0.52 -10.67 16.16 -14.35 -0.23 -10.90 16 21 C 0.04 0.51 5.22 36.01 0.19 0.70 16 22 O -0.29 -4.11 9.67 -39.34 -0.38 -4.49 16 23 C 0.13 1.60 6.69 -39.21 -0.26 1.34 16 24 C -0.15 -1.64 9.99 -39.43 -0.39 -2.03 16 25 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 26 C -0.16 -1.34 10.04 -39.56 -0.40 -1.74 16 27 C -0.08 -0.69 10.04 -39.61 -0.40 -1.09 16 28 C -0.21 -2.11 9.04 -39.43 -0.36 -2.47 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.07 1.49 3.15 -51.93 -0.16 1.33 16 35 H 0.07 1.44 7.48 -51.93 -0.39 1.05 16 36 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 1.94 6.42 -51.93 -0.33 1.61 16 40 H 0.41 5.92 7.72 -40.82 -0.31 5.60 16 41 H 0.09 0.86 7.66 -51.92 -0.40 0.46 16 42 H 0.09 0.90 7.66 -51.93 -0.40 0.51 16 43 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.13 1.04 6.30 -52.49 -0.33 0.71 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -30.36 386.03 -7.55 -37.90 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -6.83 Total: 11.02 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.00 Total: 2.81 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.24 Total: -44.02 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.53 Total: -28.78 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.25 Total: 15.26 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.36 -7.55 -37.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.730 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds