Wall clock time and date at job start Tue Mar 31 2020 18:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46809 * 2 1 4 4 N 1.46506 * 109.46782 * 184.46404 * 3 2 1 5 5 C 1.37100 * 120.00111 * 265.73143 * 4 3 2 6 6 H 1.07999 * 120.00017 * 145.38306 * 5 4 3 7 7 C 1.38945 * 119.99730 * 325.37424 * 5 4 3 8 8 N 1.31415 * 119.99917 * 156.82948 * 7 5 4 9 9 Si 1.86800 * 120.00561 * 336.83353 * 7 5 4 10 10 H 1.48509 * 109.47211 * 95.21319 * 9 7 5 11 11 H 1.48492 * 109.47390 * 215.21868 * 9 7 5 12 12 H 1.48507 * 109.46758 * 335.21871 * 9 7 5 13 13 C 1.34778 * 120.00012 * 85.72899 * 4 3 2 14 14 O 1.21296 * 119.99769 * 5.37193 * 13 4 3 15 15 C 1.50694 * 119.99948 * 185.36963 * 13 4 3 16 16 H 1.08994 * 109.47342 * 46.10974 * 15 13 4 17 17 C 1.52999 * 109.47285 * 286.10511 * 15 13 4 18 18 N 1.46507 * 109.46954 * 166.10522 * 15 13 4 19 19 C 1.34772 * 119.99799 * 204.99713 * 18 15 13 20 20 O 1.21277 * 120.00547 * 0.02562 * 19 18 15 21 21 C 1.50706 * 119.99735 * 179.97438 * 19 18 15 22 22 O 1.42901 * 109.47189 * 179.97438 * 21 19 18 23 23 C 1.35901 * 117.00021 * 180.02562 * 22 21 19 24 24 C 1.38733 * 120.05434 * 180.02562 * 23 22 21 25 25 C 1.38140 * 119.94209 * 179.97438 * 24 23 22 26 26 C 1.38266 * 120.05676 * 359.97438 * 25 24 23 27 27 C 1.38270 * 120.11233 * 0.04322 * 26 25 24 28 28 C 1.38141 * 120.05551 * 359.95991 * 27 26 25 29 29 H 1.09000 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47494 * 300.00040 * 1 2 3 31 31 H 1.09007 * 109.46869 * 60.00310 * 1 2 3 32 32 H 1.08994 * 109.46752 * 239.99996 * 2 1 3 33 33 H 1.08997 * 109.46952 * 120.00193 * 2 1 3 34 34 H 1.08998 * 109.47073 * 64.47267 * 3 2 1 35 35 H 1.08999 * 109.47520 * 304.46111 * 3 2 1 36 36 H 0.97002 * 120.00464 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47365 * 172.95964 * 17 15 13 38 38 H 1.08998 * 109.47379 * 292.96439 * 17 15 13 39 39 H 1.09005 * 109.46772 * 52.96029 * 17 15 13 40 40 H 0.96999 * 119.99543 * 25.00303 * 18 15 13 41 41 H 1.09010 * 109.46804 * 60.00507 * 21 19 18 42 42 H 1.08997 * 109.47283 * 300.00535 * 21 19 18 43 43 H 1.07995 * 120.02684 * 359.70593 * 24 23 22 44 44 H 1.07999 * 119.97457 * 180.02562 * 25 24 23 45 45 H 1.08003 * 119.94515 * 180.02562 * 26 25 24 46 46 H 1.07994 * 119.97188 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.02767 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5010 1.4439 -0.1075 5 6 4.2717 1.5022 1.0249 6 1 5.2142 0.9764 1.0643 7 6 3.8401 2.2378 2.1218 8 7 4.2940 1.9552 3.3222 9 14 2.6148 3.6286 1.8902 10 1 1.2405 3.1245 2.1408 11 1 2.9222 4.7234 2.8450 12 1 2.7073 4.1435 0.5003 13 6 4.0876 1.3878 -1.3197 14 8 3.4095 1.4346 -2.3243 15 6 5.5859 1.2671 -1.4268 16 1 5.9390 0.5011 -0.7365 17 6 6.2321 2.6084 -1.0744 18 7 5.9491 0.8950 -2.7965 19 6 7.1093 0.2519 -3.0349 20 8 7.8524 -0.0192 -2.1156 21 6 7.4826 -0.1314 -4.4437 22 8 8.7474 -0.7965 -4.4372 23 6 9.2329 -1.2106 -5.6370 24 6 10.4552 -1.8636 -5.7040 25 6 10.9463 -2.2840 -6.9248 26 6 10.2206 -2.0550 -8.0792 27 6 9.0024 -1.4040 -8.0152 28 6 8.5069 -0.9816 -6.7968 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.7435 1.9326 0.9273 35 1 1.6128 1.9789 -0.8473 36 1 3.9924 2.4685 4.0881 37 1 7.3147 2.4896 -1.0297 38 1 5.9786 3.3453 -1.8364 39 1 5.8634 2.9459 -0.1057 40 1 5.3546 1.1115 -3.5317 41 1 7.5476 0.7659 -5.0593 42 1 6.7232 -0.7981 -4.8523 43 1 11.0241 -2.0393 -4.8031 44 1 11.8975 -2.7928 -6.9775 45 1 10.6061 -2.3848 -9.0327 46 1 8.4377 -1.2260 -8.9183 47 1 7.5556 -0.4729 -6.7474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056484433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:57 Heat of formation + Delta-G solvation = -91.835480 kcal Electronic energy + Delta-G solvation = -28543.783751 eV Core-core repulsion = 24498.773642 eV Total energy + Delta-G solvation = -4045.010108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65022 -41.06654 -40.12444 -38.22023 -37.36129 -36.00003 -34.72751 -33.66912 -32.36252 -31.83607 -30.91956 -28.89909 -27.69533 -27.05285 -24.88541 -23.63969 -23.12342 -22.67445 -21.52391 -21.01706 -19.48776 -19.40902 -18.45783 -17.57960 -17.49298 -17.40435 -17.01673 -16.62538 -16.36491 -16.03935 -15.80677 -15.58006 -15.43639 -15.21030 -14.90717 -14.64184 -14.37772 -14.30962 -14.18049 -13.79429 -13.67550 -13.49900 -13.27519 -13.20538 -13.05740 -12.65432 -12.50950 -12.48784 -12.46394 -12.16680 -12.09543 -11.92130 -11.82839 -11.53063 -11.08415 -11.03476 -10.61690 -10.22330 -9.93789 -9.82764 -9.19585 -8.54896 -6.13774 0.40876 0.48981 1.16997 1.30302 1.37983 1.42089 1.44827 1.73821 2.14683 2.41326 2.73765 2.86062 2.91999 3.50487 3.82752 3.88919 4.00430 4.01343 4.04521 4.05266 4.10619 4.22482 4.26745 4.31418 4.36848 4.48832 4.52514 4.55213 4.62533 4.72645 4.77651 4.84762 4.90959 5.09414 5.10746 5.17949 5.20661 5.26281 5.34384 5.36125 5.45544 5.49354 5.61963 5.84344 5.99544 6.17598 6.32684 6.47964 6.86473 7.08188 7.30591 7.62761 8.58788 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020230 B = 0.002387 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.729903 B =11725.232251 C =12420.034824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.095 3.905 4 N -0.463 5.463 5 C -0.347 4.347 6 H 0.082 0.918 7 C 0.034 3.966 8 N -0.889 5.889 9 Si 0.924 3.076 10 H -0.256 1.256 11 H -0.286 1.286 12 H -0.263 1.263 13 C 0.475 3.525 14 O -0.604 6.604 15 C 0.151 3.849 16 H 0.083 0.917 17 C -0.144 4.144 18 N -0.697 5.697 19 C 0.513 3.487 20 O -0.569 6.569 21 C 0.050 3.950 22 O -0.321 6.321 23 C 0.103 3.897 24 C -0.174 4.174 25 C -0.083 4.083 26 C -0.162 4.162 27 C -0.083 4.083 28 C -0.217 4.217 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.281 0.719 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.418 0.582 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.151 0.849 45 H 0.150 0.850 46 H 0.152 0.848 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.589 -3.708 -20.249 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C -0.027 4.027 4 N -0.182 5.182 5 C -0.474 4.474 6 H 0.100 0.900 7 C -0.171 4.171 8 N -0.525 5.525 9 Si 0.750 3.250 10 H -0.181 1.181 11 H -0.213 1.213 12 H -0.187 1.187 13 C 0.264 3.736 14 O -0.490 6.490 15 C 0.043 3.957 16 H 0.101 0.899 17 C -0.202 4.202 18 N -0.352 5.352 19 C 0.299 3.701 20 O -0.447 6.447 21 C -0.027 4.027 22 O -0.235 6.235 23 C 0.059 3.941 24 C -0.192 4.192 25 C -0.101 4.101 26 C -0.180 4.180 27 C -0.101 4.101 28 C -0.235 4.235 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.257 0.743 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.169 0.831 45 H 0.167 0.833 46 H 0.169 0.831 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.851 -3.860 -19.643 20.385 hybrid contribution -0.651 0.742 0.557 1.134 sum 3.199 -3.118 -19.086 19.601 Atomic orbital electron populations 1.21677 0.93087 1.02891 1.02219 1.21707 0.97638 0.95725 1.01378 1.21854 0.81143 0.98567 1.01109 1.43778 1.05213 1.64100 1.05119 1.18888 1.05681 1.31971 0.90860 0.89988 1.25793 0.98706 0.98539 0.94097 1.69852 1.44805 1.38743 0.99057 0.86202 0.79901 0.80004 0.78910 1.18145 1.21254 1.18698 1.20434 0.89833 0.80134 0.83192 1.90499 1.65688 1.56735 1.36075 1.20316 0.91877 0.99416 0.84134 0.89904 1.21920 1.00435 0.94714 1.03161 1.45582 1.21393 1.58730 1.09488 1.20660 0.80951 0.77116 0.91330 1.90740 1.51654 1.55072 1.47242 1.22524 0.86102 1.00517 0.93604 1.86112 1.35841 1.72432 1.29083 1.19394 0.94530 0.96002 0.84217 1.20699 0.95212 1.03342 0.99972 1.21288 1.00354 0.97488 0.90964 1.21479 0.95726 1.01404 0.99354 1.21354 0.95869 0.95440 0.97463 1.21573 1.02476 1.07122 0.92354 0.90839 0.92498 0.91818 0.92799 0.92797 0.91834 0.90771 0.90873 0.92009 0.91269 0.90648 0.74297 0.85600 0.86149 0.85827 0.83126 0.83273 0.83060 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.91 71.98 0.71 -3.21 16 2 C -0.13 -4.59 6.23 30.59 0.19 -4.39 16 3 C 0.10 3.95 4.08 86.38 0.35 4.30 16 4 N -0.46 -21.23 2.23 -635.54 -1.42 -22.65 16 5 C -0.35 -17.58 7.54 84.04 0.63 -16.94 16 6 H 0.08 4.55 6.76 -2.91 -0.02 4.53 16 7 C 0.03 1.74 5.29 84.92 0.45 2.19 16 8 N -0.89 -48.24 13.96 21.66 0.30 -47.94 16 9 Si 0.92 39.92 24.97 68.60 1.71 41.64 16 10 H -0.26 -10.26 6.64 99.48 0.66 -9.60 16 11 H -0.29 -12.22 7.11 99.48 0.71 -11.52 16 12 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 13 C 0.48 20.60 6.94 87.65 0.61 21.21 16 14 O -0.60 -26.32 15.48 -3.08 -0.05 -26.37 16 15 C 0.15 5.99 2.20 44.24 0.10 6.09 16 16 H 0.08 3.77 6.51 -2.39 -0.02 3.76 16 17 C -0.14 -5.40 9.36 71.98 0.67 -4.73 16 18 N -0.70 -22.42 5.02 -446.10 -2.24 -24.66 16 19 C 0.51 16.71 7.87 87.66 0.69 17.40 16 20 O -0.57 -24.34 16.16 16.02 0.26 -24.08 16 21 C 0.05 1.15 5.22 71.24 0.37 1.52 16 22 O -0.32 -9.21 9.67 -73.40 -0.71 -9.92 16 23 C 0.10 2.44 6.69 22.51 0.15 2.59 16 24 C -0.17 -3.80 9.99 22.37 0.22 -3.58 16 25 C -0.08 -1.33 10.04 22.25 0.22 -1.10 16 26 C -0.16 -2.19 10.04 22.28 0.22 -1.96 16 27 C -0.08 -1.17 10.04 22.25 0.22 -0.95 16 28 C -0.22 -3.82 9.04 22.37 0.20 -3.62 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.06 2.68 3.15 -2.39 -0.01 2.67 16 35 H 0.07 2.97 7.48 -2.39 -0.02 2.95 16 36 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 3.15 6.42 -2.38 -0.02 3.13 16 40 H 0.42 11.49 7.72 -92.71 -0.72 10.77 16 41 H 0.13 1.99 7.66 -2.38 -0.02 1.98 16 42 H 0.12 2.06 7.66 -2.39 -0.02 2.04 16 43 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 44 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 46 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.15 1.90 6.30 -2.91 -0.02 1.88 16 Total: -1.00 -67.77 386.03 4.11 -63.66 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.23 Total: 35.52 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 6.03 Total: 14.81 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -3.36 Total: -95.25 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: -0.50 Total: -60.37 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.71 Total: 41.64 kcal Total: -67.77 4.11 -63.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.178 kcal (2) G-P(sol) polarization free energy of solvation -67.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds