Wall clock time and date at job start Tue Mar 31 2020 18:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47149 * 2 1 4 4 N 1.46495 * 109.47207 * 179.97438 * 3 2 1 5 5 C 1.46504 * 120.00038 * 270.00085 * 4 3 2 6 6 C 1.34779 * 120.00094 * 89.99729 * 4 3 2 7 7 O 1.21360 * 119.99675 * 354.35029 * 6 4 3 8 8 C 1.49344 * 120.00162 * 174.34694 * 6 4 3 9 9 O 1.21375 * 120.00187 * 359.87164 * 8 6 4 10 10 N 1.34776 * 120.00108 * 179.87200 * 8 6 4 11 11 C 1.39721 * 120.00110 * 185.11343 * 10 8 6 12 12 C 1.38991 * 120.05056 * 144.57420 * 11 10 8 13 13 C 1.38098 * 120.03585 * 180.02562 * 12 11 10 14 14 C 1.38228 * 120.13568 * 359.72280 * 13 12 11 15 15 C 1.38778 * 120.08782 * 0.55022 * 14 13 12 16 16 O 1.35895 * 120.01670 * 179.71908 * 15 14 13 17 17 C 1.42901 * 117.00012 * 359.72953 * 16 15 14 18 18 C 1.53001 * 109.47428 * 179.97438 * 17 16 15 19 19 C 1.50693 * 109.47514 * 180.02562 * 18 17 16 20 20 H 1.08008 * 119.99678 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00348 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99974 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99668 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47116 * 90.00311 * 23 21 19 25 25 H 1.48508 * 109.46944 * 210.00063 * 23 21 19 26 26 H 1.48504 * 109.47416 * 329.99687 * 23 21 19 27 27 C 1.38608 * 119.96508 * 359.45198 * 15 14 13 28 28 H 1.08997 * 109.47592 * 300.00262 * 1 2 3 29 29 H 1.09005 * 109.46937 * 60.00588 * 1 2 3 30 30 H 1.08999 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47074 * 239.99779 * 2 1 3 32 32 H 1.09005 * 109.46524 * 120.00068 * 2 1 3 33 33 H 1.08997 * 109.47087 * 59.99429 * 3 2 1 34 34 H 1.08999 * 109.46752 * 300.00001 * 3 2 1 35 35 H 1.08996 * 109.46636 * 264.05635 * 5 4 3 36 36 H 1.08997 * 109.46831 * 24.06090 * 5 4 3 37 37 H 1.08999 * 109.46858 * 144.06066 * 5 4 3 38 38 H 0.97003 * 120.00086 * 5.11018 * 10 8 6 39 39 H 1.08008 * 119.98043 * 359.97438 * 12 11 10 40 40 H 1.08006 * 119.93413 * 179.97438 * 13 12 11 41 41 H 1.07999 * 119.95735 * 180.29816 * 14 13 12 42 42 H 1.08998 * 109.47181 * 300.00066 * 17 16 15 43 43 H 1.09006 * 109.47139 * 60.00185 * 17 16 15 44 44 H 1.08998 * 109.47402 * 300.00431 * 18 17 16 45 45 H 1.09006 * 109.46400 * 60.00234 * 18 17 16 46 46 H 0.97003 * 119.99503 * 179.97438 * 22 21 19 47 47 H 1.08008 * 120.06358 * 180.24768 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.4426 1.2697 6 6 4.1794 1.4422 -1.1663 7 8 3.5774 1.3386 -2.2150 8 6 5.6674 1.5697 -1.1689 9 8 6.2692 1.6758 -0.1202 10 7 6.3420 1.5668 -2.3356 11 6 7.7391 1.5783 -2.3349 12 6 8.4414 0.8796 -3.3098 13 6 9.8224 0.8907 -3.3084 14 6 10.5097 1.6006 -2.3418 15 6 9.8140 2.2954 -1.3625 16 8 10.4913 2.9881 -0.4095 17 6 11.9184 2.9527 -0.4729 18 6 12.5007 3.7840 0.6720 19 6 14.0057 3.7472 0.6048 20 1 14.4977 3.1872 -0.1767 21 6 14.7545 4.4284 1.5409 22 7 16.0679 4.3967 1.4818 23 14 13.9034 5.3964 2.8929 24 1 13.6872 4.5173 4.0700 25 1 14.7525 6.5497 3.2856 26 1 12.5939 5.8918 2.3978 27 6 8.4280 2.2870 -1.3601 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9562 -0.8900 35 1 4.5106 2.4648 1.5310 36 1 3.6056 1.0238 2.0533 37 1 5.1392 0.8395 1.1687 38 1 5.8575 1.5568 -3.1760 39 1 7.9068 0.3271 -4.0684 40 1 10.3665 0.3469 -4.0666 41 1 11.5896 1.6112 -2.3463 42 1 12.2606 1.9216 -0.3842 43 1 12.2502 3.3649 -1.4259 44 1 12.1585 4.8151 0.5829 45 1 12.1690 3.3722 1.6252 46 1 16.5947 4.8762 2.1402 47 1 7.8849 2.8305 -0.6010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057693488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:24 Heat of formation + Delta-G solvation = -75.299613 kcal Electronic energy + Delta-G solvation = -27767.092732 eV Core-core repulsion = 23722.799673 eV Total energy + Delta-G solvation = -4044.293059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.44878 -40.01681 -38.97884 -37.40665 -36.74998 -34.79600 -33.60851 -33.32845 -31.16074 -30.05164 -29.28766 -27.95432 -27.13125 -25.33596 -24.41425 -22.88659 -22.16704 -21.64398 -20.49191 -20.08954 -18.63041 -17.97112 -17.32043 -16.77055 -16.57605 -16.13695 -15.91722 -15.63007 -15.50290 -15.35183 -15.08996 -14.72737 -14.36102 -14.10659 -13.75249 -13.47590 -13.32623 -13.26703 -12.97049 -12.91773 -12.58926 -12.53143 -12.36123 -11.96795 -11.92092 -11.83229 -11.66896 -11.50566 -11.18501 -10.95097 -10.87859 -10.43761 -10.19274 -9.99274 -9.82042 -9.64972 -9.34807 -9.25228 -8.62765 -8.43173 -7.94660 -6.13945 -4.14853 0.81962 1.44567 1.54325 1.91315 2.81293 3.01564 3.28793 3.35941 3.41792 3.66011 3.85204 4.00103 4.39049 4.43093 4.45933 4.69495 4.87941 4.90881 4.92798 5.10195 5.14230 5.18675 5.20331 5.25643 5.31329 5.35573 5.52643 5.54786 5.55632 5.60792 5.70037 5.77782 5.89983 5.91242 5.92580 6.11170 6.22420 6.39233 6.43706 6.56297 6.58969 6.78306 6.90350 7.08471 7.22952 7.31890 7.60371 7.61839 7.88772 8.38120 8.86609 9.46436 10.98493 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.002140 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.886973 B =13081.822551 C =14587.177672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.112 3.888 4 N -0.586 5.586 5 C 0.070 3.930 6 C 0.510 3.490 7 O -0.519 6.519 8 C 0.503 3.497 9 O -0.486 6.486 10 N -0.641 5.641 11 C 0.168 3.832 12 C -0.186 4.186 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.162 3.838 16 O -0.315 6.315 17 C 0.072 3.928 18 C -0.009 4.009 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.897 5.897 23 Si 0.880 3.120 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 C -0.160 4.160 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.422 0.578 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.135 0.865 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.024 0.976 46 H 0.266 0.734 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.633 -8.871 -6.396 31.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C -0.010 4.010 4 N -0.319 5.319 5 C -0.072 4.072 6 C 0.292 3.708 7 O -0.395 6.395 8 C 0.285 3.715 9 O -0.359 6.359 10 N -0.287 5.287 11 C 0.074 3.926 12 C -0.207 4.207 13 C -0.080 4.080 14 C -0.238 4.238 15 C 0.114 3.886 16 O -0.228 6.228 17 C -0.002 4.002 18 C -0.047 4.047 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.707 3.293 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.187 1.187 27 C -0.181 4.181 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.260 0.740 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -29.470 -8.663 -5.895 31.277 hybrid contribution -0.281 0.373 0.272 0.540 sum -29.751 -8.290 -5.623 31.392 Atomic orbital electron populations 1.21688 0.94755 1.02191 1.02055 1.21893 0.96484 0.96686 1.02894 1.21730 0.77670 0.97752 1.03817 1.47744 1.07194 1.70467 1.06499 1.22311 0.97683 1.03848 0.83341 1.19963 0.87909 0.78537 0.84411 1.90766 1.69626 1.48231 1.30927 1.20205 0.88568 0.78322 0.84386 1.90797 1.69486 1.45167 1.30499 1.43043 1.05150 1.71014 1.09543 1.17271 0.80987 0.97157 0.97155 1.20692 0.94462 1.03861 1.01652 1.20699 0.93094 0.96872 0.97297 1.21466 1.01158 1.03373 0.97803 1.18901 0.91272 0.90381 0.88047 1.86140 1.22785 1.66341 1.47578 1.23117 0.74380 1.01127 1.01604 1.19589 0.96476 0.95545 0.93063 1.20838 0.88126 1.32752 1.14767 0.90720 1.24928 0.94705 0.95849 0.97511 1.69895 1.04685 1.42768 1.36199 0.86762 0.80104 0.80037 0.82400 1.20037 1.21183 1.18738 1.20383 0.91550 1.03827 1.02323 0.92512 0.92358 0.92277 0.91295 0.91614 0.89720 0.89498 0.91504 0.91197 0.88342 0.74027 0.85744 0.85355 0.84742 0.92382 0.92362 0.95387 0.95783 0.92454 0.83765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.14 -0.85 6.26 -26.73 -0.17 -1.02 16 3 C 0.11 0.73 5.34 -4.05 -0.02 0.71 16 4 N -0.59 -5.02 2.87 -182.13 -0.52 -5.54 16 5 C 0.07 0.54 9.27 59.85 0.55 1.09 16 6 C 0.51 5.39 7.72 -11.63 -0.09 5.30 16 7 O -0.52 -6.17 16.12 5.49 0.09 -6.08 16 8 C 0.50 5.86 7.61 -11.64 -0.09 5.77 16 9 O -0.49 -6.61 10.71 5.48 0.06 -6.55 16 10 N -0.64 -6.94 5.32 -10.31 -0.05 -7.00 16 11 C 0.17 2.16 6.29 -83.77 -0.53 1.64 16 12 C -0.19 -2.11 9.96 -39.35 -0.39 -2.51 16 13 C -0.06 -0.73 10.03 -39.64 -0.40 -1.13 16 14 C -0.22 -3.24 9.04 -39.39 -0.36 -3.60 16 15 C 0.16 2.76 6.68 -39.25 -0.26 2.50 16 16 O -0.32 -6.26 10.13 -19.41 -0.20 -6.46 16 17 C 0.07 1.47 4.68 37.16 0.17 1.65 16 18 C -0.01 -0.23 4.41 -27.89 -0.12 -0.35 16 19 C -0.53 -14.82 9.66 -34.44 -0.33 -15.15 16 20 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 21 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 22 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 23 Si 0.88 21.63 27.47 -169.99 -4.67 16.97 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 27 C -0.16 -2.51 8.63 -39.23 -0.34 -2.85 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.38 8.07 -51.93 -0.42 -0.03 16 34 H 0.09 0.63 7.51 -51.93 -0.39 0.24 16 35 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 36 H 0.07 0.37 8.03 -51.93 -0.42 -0.05 16 37 H 0.10 0.92 5.84 -51.93 -0.30 0.62 16 38 H 0.42 3.62 8.30 -40.82 -0.34 3.28 16 39 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 40 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 41 H 0.13 1.95 6.29 -52.49 -0.33 1.62 16 42 H 0.06 1.14 7.67 -51.93 -0.40 0.75 16 43 H 0.06 1.14 7.65 -51.93 -0.40 0.74 16 44 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 45 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.14 2.39 6.23 -52.48 -0.33 2.06 16 LS Contribution 389.90 15.07 5.88 5.88 Total: -1.00 -32.63 389.90 -7.80 -40.43 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.05 Total: 1.08 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.10 Total: -6.28 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.20 Total: -38.98 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.05 Total: -19.09 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.63 -7.80 -40.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057693488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.871 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds